Wall clock time and date at job start Tue Mar 31 2020 19:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99944 * 2 1 4 4 H 1.48499 * 109.47378 * 269.99649 * 3 2 1 5 5 H 1.48502 * 109.46910 * 29.99620 * 3 2 1 6 6 H 1.48506 * 109.46983 * 149.99367 * 3 2 1 7 7 C 1.37870 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00267 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00125 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47565 * 180.02562 * 9 7 2 11 11 C 1.46498 * 120.00191 * 78.93932 * 10 9 7 12 12 C 1.52998 * 109.47009 * 90.00124 * 11 10 9 13 13 N 1.46898 * 109.47477 * 180.02562 * 12 11 10 14 14 C 1.47019 * 111.00149 * 293.64024 * 13 12 11 15 15 C 1.53103 * 109.25552 * 177.60288 * 14 13 12 16 16 O 1.43008 * 109.25808 * 56.85214 * 15 14 13 17 17 C 1.43022 * 113.73842 * 301.32196 * 16 15 14 18 18 C 1.47015 * 111.00654 * 169.99823 * 13 12 11 19 19 C 1.34781 * 120.00286 * 258.94144 * 10 9 7 20 20 O 1.21595 * 120.00398 * 180.47710 * 19 10 9 21 21 C 1.47464 * 119.99450 * 0.48338 * 19 10 9 22 22 C 1.41586 * 120.26125 * 24.33489 * 21 19 10 23 23 C 1.35976 * 119.01430 * 180.02562 * 22 21 19 24 24 C 1.40758 * 119.49271 * 359.97438 * 23 22 21 25 25 O 1.21967 * 119.74605 * 180.02562 * 24 23 22 26 26 N 1.34537 * 120.50646 * 0.02562 * 24 23 22 27 27 H 0.97004 * 119.48093 * 180.02562 * 26 24 23 28 28 C 1.34597 * 121.04345 * 359.71243 * 26 24 23 29 29 H 0.97000 * 119.99778 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46947 * 60.00500 * 9 7 2 31 31 H 1.09003 * 109.47578 * 300.00550 * 9 7 2 32 32 H 1.08998 * 109.47116 * 330.00298 * 11 10 9 33 33 H 1.08998 * 109.47823 * 210.00107 * 11 10 9 34 34 H 1.09007 * 109.47072 * 60.00315 * 12 11 10 35 35 H 1.09002 * 109.47407 * 300.00187 * 12 11 10 36 36 H 1.08997 * 109.50062 * 297.53752 * 14 13 12 37 37 H 1.08998 * 109.50476 * 57.66808 * 14 13 12 38 38 H 1.08997 * 109.50445 * 296.90961 * 15 14 13 39 39 H 1.09004 * 109.53664 * 176.80303 * 15 14 13 40 40 H 1.09001 * 109.50520 * 298.74491 * 17 16 15 41 41 H 1.08990 * 109.54363 * 178.62984 * 17 16 15 42 42 H 1.08997 * 109.50872 * 302.33519 * 18 13 12 43 43 H 1.08999 * 109.49946 * 62.41806 * 18 13 12 44 44 H 1.08001 * 120.49343 * 0.02562 * 22 21 19 45 45 H 1.08002 * 120.25478 * 180.02562 * 23 22 21 46 46 H 1.07997 * 119.77444 * 180.28696 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.0151 -3.3467 -1.2443 12 6 5.3552 -3.1432 -1.9539 13 7 5.3703 -3.9163 -3.2029 14 6 5.3427 -5.3605 -2.9290 15 6 5.2992 -6.1250 -4.2548 16 8 6.4229 -5.7470 -5.0544 17 6 6.4808 -4.3470 -5.3410 18 6 6.5363 -3.5644 -4.0264 19 6 4.4352 -3.1362 1.1466 20 8 4.8486 -4.2797 1.1448 21 6 4.4098 -2.3632 2.4021 22 6 3.5055 -1.2850 2.5580 23 6 3.5041 -0.5890 3.7262 24 6 4.3972 -0.9539 4.7512 25 8 4.3995 -0.3331 5.8011 26 7 5.2481 -1.9820 4.5818 27 1 5.8570 -2.2209 5.2982 28 6 5.2638 -2.6885 3.4362 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6801 0.8912 31 1 3.8753 -0.6803 -0.8888 32 1 3.2062 -3.0078 -1.8915 33 1 3.8806 -4.4044 -1.0182 34 1 6.1642 -3.4821 -1.3066 35 1 5.4897 -2.0855 -2.1801 36 1 6.2380 -5.6430 -2.3752 37 1 4.4580 -5.6024 -2.3401 38 1 4.3777 -5.8831 -4.7843 39 1 5.3358 -7.1967 -4.0589 40 1 5.5936 -4.0534 -5.9021 41 1 7.3720 -4.1320 -5.9304 42 1 6.5229 -2.4953 -4.2384 43 1 7.4505 -3.8176 -3.4897 44 1 2.8269 -1.0192 1.7610 45 1 2.8225 0.2368 3.8668 46 1 5.9523 -3.5129 3.3239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079726833.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:14 Heat of formation + Delta-G solvation = -42.785450 kcal Electronic energy + Delta-G solvation = -29672.914417 eV Core-core repulsion = 25564.605367 eV Total energy + Delta-G solvation = -4108.309050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.13608 -39.76290 -39.18585 -36.62537 -36.18483 -35.46886 -33.47159 -32.76829 -31.32337 -30.32936 -29.53356 -28.18261 -26.23577 -24.18160 -24.03725 -23.44764 -22.66269 -22.01547 -20.44038 -19.77588 -18.00748 -17.28982 -16.98780 -16.83244 -16.61719 -16.22125 -15.64994 -15.50745 -15.30195 -15.16052 -14.92759 -14.83924 -14.46653 -14.35181 -14.01238 -13.74063 -13.28159 -13.14301 -13.01138 -12.58278 -12.45510 -12.13682 -11.94692 -11.81427 -11.51790 -11.43014 -11.30475 -11.14620 -10.81573 -10.75112 -10.44969 -10.40728 -10.02282 -9.86656 -9.76130 -9.66309 -9.26553 -8.92514 -8.45345 -8.08777 -7.75967 -6.45168 -4.50190 1.01592 1.72487 2.93429 3.06060 3.13559 3.17343 3.30743 3.42073 3.74002 4.00316 4.01122 4.07088 4.74184 4.77286 4.82354 4.91443 4.91971 4.94693 5.04918 5.18161 5.22358 5.33713 5.39706 5.44659 5.46191 5.54069 5.63168 5.67872 5.73414 5.82408 5.87433 6.06911 6.20503 6.31048 6.36008 6.49760 6.50542 6.63222 6.84911 6.90066 6.93093 7.02318 7.03487 7.09416 7.22380 7.85446 8.16126 8.18180 8.59239 8.67437 9.10231 10.65417 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010969 B = 0.003757 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.941989 B = 7450.540932 C = 9232.281166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.084 3.916 3 Si 0.860 3.140 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.551 4.551 8 H 0.086 0.914 9 C 0.182 3.818 10 N -0.579 5.579 11 C 0.126 3.874 12 C 0.043 3.957 13 N -0.532 5.532 14 C 0.015 3.985 15 C 0.064 3.936 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.019 3.981 19 C 0.576 3.424 20 O -0.570 6.570 21 C -0.231 4.231 22 C -0.022 4.022 23 C -0.267 4.267 24 C 0.516 3.484 25 O -0.562 6.562 26 N -0.602 5.602 27 H 0.414 0.586 28 C 0.182 3.818 29 H 0.272 0.728 30 H 0.058 0.942 31 H 0.030 0.970 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.040 0.960 44 H 0.211 0.789 45 H 0.149 0.851 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.272 -6.486 -4.768 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.123 4.123 3 Si 0.685 3.315 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.588 4.588 8 H 0.104 0.896 9 C 0.061 3.939 10 N -0.308 5.308 11 C 0.003 3.997 12 C -0.085 4.085 13 N -0.258 5.258 14 C -0.113 4.113 15 C -0.013 4.013 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.365 3.635 20 O -0.452 6.452 21 C -0.240 4.240 22 C -0.041 4.041 23 C -0.288 4.288 24 C 0.319 3.681 25 O -0.446 6.446 26 N -0.232 5.232 27 H 0.251 0.749 28 C 0.050 3.950 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.226 0.774 45 H 0.167 0.833 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 11.870 -6.472 -4.576 14.273 hybrid contribution 1.045 0.930 0.827 1.625 sum 12.915 -5.542 -3.749 14.545 Atomic orbital electron populations 1.69867 1.06261 1.27867 1.46599 1.24928 0.94812 0.98955 0.93589 0.87084 0.80892 0.84014 0.79517 1.19402 1.20232 1.18240 1.21293 0.88797 0.95523 1.53216 0.89575 1.20700 0.95916 0.78549 0.98715 1.47624 1.60949 1.15494 1.06734 1.21253 0.96685 0.96792 0.85016 1.22503 0.98447 0.98278 0.89297 1.62119 1.40575 1.05033 1.18084 1.22853 1.02490 0.88138 0.97840 1.22692 0.89344 0.98952 0.90334 1.87956 1.47364 1.23962 1.71517 1.22648 1.02331 0.80881 0.95385 1.22767 0.92040 1.01032 0.95150 1.17660 0.77277 0.85510 0.83084 1.90699 1.49870 1.17996 1.86618 1.19554 1.04467 1.03664 0.96320 1.23877 0.93559 0.87949 0.98744 1.22004 1.05274 1.07304 0.94265 1.17440 0.81479 0.79748 0.89477 1.90927 1.71297 1.53267 1.29084 1.43274 1.34950 1.28960 1.16021 0.74872 1.22112 0.95925 0.92861 0.84105 0.91763 0.92504 0.95171 0.88707 0.90535 0.94487 0.90453 0.93907 0.88934 0.92096 0.88549 0.92133 0.88688 0.89589 0.94160 0.77370 0.83307 0.81057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.27 13.96 55.43 0.77 -22.49 16 2 C 0.08 2.06 5.31 -17.82 -0.09 1.97 16 3 Si 0.86 18.15 27.31 -169.99 -4.64 13.51 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.26 -5.11 6.54 56.52 0.37 -4.74 16 7 C -0.55 -12.95 7.88 -34.44 -0.27 -13.22 16 8 H 0.09 2.29 8.06 -52.49 -0.42 1.86 16 9 C 0.18 3.60 3.71 -5.20 -0.02 3.58 16 10 N -0.58 -10.60 2.48 -176.32 -0.44 -11.03 16 11 C 0.13 2.07 5.31 -4.04 -0.02 2.05 16 12 C 0.04 0.62 5.28 -3.83 -0.02 0.60 16 13 N -0.53 -6.85 4.73 -234.30 -1.11 -7.96 16 14 C 0.01 0.18 5.44 -3.71 -0.02 0.16 16 15 C 0.06 0.68 7.01 37.21 0.26 0.94 16 16 O -0.39 -4.64 10.83 -35.23 -0.38 -5.02 16 17 C 0.06 0.65 7.01 37.21 0.26 0.91 16 18 C 0.02 0.20 5.64 -3.71 -0.02 0.18 16 19 C 0.58 10.51 7.51 -12.50 -0.09 10.42 16 20 O -0.57 -10.98 16.15 5.28 0.09 -10.90 16 21 C -0.23 -3.88 5.60 -104.95 -0.59 -4.47 16 22 C -0.02 -0.40 7.53 -39.12 -0.29 -0.70 16 23 C -0.27 -4.81 9.97 -39.44 -0.39 -5.20 16 24 C 0.52 8.87 7.67 -15.41 -0.12 8.75 16 25 O -0.56 -11.27 17.91 4.95 0.09 -11.18 16 26 N -0.60 -7.78 5.19 -14.63 -0.08 -7.85 16 27 H 0.41 3.91 8.88 -40.82 -0.36 3.55 16 28 C 0.18 2.39 10.75 -16.43 -0.18 2.21 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.06 1.13 3.19 -52.00 -0.17 0.96 16 31 H 0.03 0.58 7.57 -51.93 -0.39 0.19 16 32 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 33 H 0.08 1.28 5.80 -51.93 -0.30 0.97 16 34 H 0.04 0.56 8.12 -51.92 -0.42 0.14 16 35 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.13 6.38 -51.93 -0.33 0.80 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 43 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.21 4.33 2.58 -52.49 -0.14 4.19 16 45 H 0.15 2.65 8.06 -52.49 -0.42 2.23 16 46 H 0.17 1.73 7.79 -52.49 -0.41 1.32 16 LS Contribution 368.67 15.07 5.56 5.56 Total: -1.00 -30.30 368.67 -8.08 -38.38 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -6.32 Total: 10.83 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -1.61 Total: 8.17 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.85 Total: -49.34 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.21 Total: -27.10 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -4.64 Total: 13.51 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.30 -8.08 -38.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079726833.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.410 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds