Wall clock time and date at job start Tue Mar 31 2020 19:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99944 * 2 1 4 4 H 1.48499 * 109.47378 * 269.99649 * 3 2 1 5 5 H 1.48502 * 109.46910 * 29.99620 * 3 2 1 6 6 H 1.48506 * 109.46983 * 149.99367 * 3 2 1 7 7 C 1.37870 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00267 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00125 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47565 * 180.02562 * 9 7 2 11 11 C 1.46498 * 120.00191 * 78.93932 * 10 9 7 12 12 C 1.52998 * 109.47009 * 90.00124 * 11 10 9 13 13 N 1.46898 * 109.47477 * 180.02562 * 12 11 10 14 14 C 1.47019 * 111.00149 * 293.64024 * 13 12 11 15 15 C 1.53103 * 109.25552 * 177.60288 * 14 13 12 16 16 O 1.43008 * 109.25808 * 56.85214 * 15 14 13 17 17 C 1.43022 * 113.73842 * 301.32196 * 16 15 14 18 18 C 1.47015 * 111.00654 * 169.99823 * 13 12 11 19 19 C 1.34781 * 120.00286 * 258.94144 * 10 9 7 20 20 O 1.21595 * 120.00398 * 180.47710 * 19 10 9 21 21 C 1.47464 * 119.99450 * 0.48338 * 19 10 9 22 22 C 1.41586 * 120.26125 * 24.33489 * 21 19 10 23 23 C 1.35976 * 119.01430 * 180.02562 * 22 21 19 24 24 C 1.40758 * 119.49271 * 359.97438 * 23 22 21 25 25 O 1.21967 * 119.74605 * 180.02562 * 24 23 22 26 26 N 1.34537 * 120.50646 * 0.02562 * 24 23 22 27 27 H 0.97004 * 119.48093 * 180.02562 * 26 24 23 28 28 C 1.34597 * 121.04345 * 359.71243 * 26 24 23 29 29 H 0.97000 * 119.99778 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46947 * 60.00500 * 9 7 2 31 31 H 1.09003 * 109.47578 * 300.00550 * 9 7 2 32 32 H 1.08998 * 109.47116 * 330.00298 * 11 10 9 33 33 H 1.08998 * 109.47823 * 210.00107 * 11 10 9 34 34 H 1.09007 * 109.47072 * 60.00315 * 12 11 10 35 35 H 1.09002 * 109.47407 * 300.00187 * 12 11 10 36 36 H 1.08997 * 109.50062 * 297.53752 * 14 13 12 37 37 H 1.08998 * 109.50476 * 57.66808 * 14 13 12 38 38 H 1.08997 * 109.50445 * 296.90961 * 15 14 13 39 39 H 1.09004 * 109.53664 * 176.80303 * 15 14 13 40 40 H 1.09001 * 109.50520 * 298.74491 * 17 16 15 41 41 H 1.08990 * 109.54363 * 178.62984 * 17 16 15 42 42 H 1.08997 * 109.50872 * 302.33519 * 18 13 12 43 43 H 1.08999 * 109.49946 * 62.41806 * 18 13 12 44 44 H 1.08001 * 120.49343 * 0.02562 * 22 21 19 45 45 H 1.08002 * 120.25478 * 180.02562 * 23 22 21 46 46 H 1.07997 * 119.77444 * 180.28696 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.0151 -3.3467 -1.2443 12 6 5.3552 -3.1432 -1.9539 13 7 5.3703 -3.9163 -3.2029 14 6 5.3427 -5.3605 -2.9290 15 6 5.2992 -6.1250 -4.2548 16 8 6.4229 -5.7470 -5.0544 17 6 6.4808 -4.3470 -5.3410 18 6 6.5363 -3.5644 -4.0264 19 6 4.4352 -3.1362 1.1466 20 8 4.8486 -4.2797 1.1448 21 6 4.4098 -2.3632 2.4021 22 6 3.5055 -1.2850 2.5580 23 6 3.5041 -0.5890 3.7262 24 6 4.3972 -0.9539 4.7512 25 8 4.3995 -0.3331 5.8011 26 7 5.2481 -1.9820 4.5818 27 1 5.8570 -2.2209 5.2982 28 6 5.2638 -2.6885 3.4362 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6801 0.8912 31 1 3.8753 -0.6803 -0.8888 32 1 3.2062 -3.0078 -1.8915 33 1 3.8806 -4.4044 -1.0182 34 1 6.1642 -3.4821 -1.3066 35 1 5.4897 -2.0855 -2.1801 36 1 6.2380 -5.6430 -2.3752 37 1 4.4580 -5.6024 -2.3401 38 1 4.3777 -5.8831 -4.7843 39 1 5.3358 -7.1967 -4.0589 40 1 5.5936 -4.0534 -5.9021 41 1 7.3720 -4.1320 -5.9304 42 1 6.5229 -2.4953 -4.2384 43 1 7.4505 -3.8176 -3.4897 44 1 2.8269 -1.0192 1.7610 45 1 2.8225 0.2368 3.8668 46 1 5.9523 -3.5129 3.3239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079726833.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:13 Heat of formation + Delta-G solvation = -65.606790 kcal Electronic energy + Delta-G solvation = -29673.904025 eV Core-core repulsion = 25564.605367 eV Total energy + Delta-G solvation = -4109.298658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.46900 -40.95191 -40.33212 -37.96941 -37.50028 -36.74438 -34.79554 -34.54756 -32.20840 -31.61841 -30.91154 -29.67099 -27.36206 -25.34562 -25.02858 -24.93342 -24.22596 -23.22012 -21.38168 -21.11321 -19.37071 -19.09889 -18.35770 -18.17379 -17.65674 -17.14743 -17.02535 -16.79024 -16.55404 -16.32689 -16.09848 -15.93490 -15.75518 -15.69338 -15.30239 -15.05356 -14.72100 -14.58411 -14.20915 -14.11617 -13.59906 -13.37688 -13.17386 -13.06646 -12.93620 -12.77562 -12.53406 -12.34107 -12.30669 -12.02011 -11.78380 -11.76731 -11.46835 -11.35991 -11.13565 -10.85534 -10.69708 -10.65328 -9.62421 -9.40550 -9.11586 -8.35661 -6.43634 -0.22402 0.31555 1.38021 1.42345 1.48077 1.73325 1.89886 2.14803 2.29203 2.64414 2.84524 2.97449 3.00630 3.54390 3.67569 3.84256 3.92166 3.96750 4.01789 4.03927 4.15169 4.21636 4.32152 4.35336 4.41546 4.50925 4.58728 4.63496 4.74343 4.78030 4.83562 4.84244 4.91538 4.98029 5.02418 5.06530 5.23578 5.28353 5.34293 5.57978 5.60653 5.75254 5.92660 5.95243 6.10830 6.18446 6.55317 6.67396 6.85546 7.14191 7.25569 8.78908 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010969 B = 0.003757 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.941989 B = 7450.540932 C = 9232.281166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.037 3.963 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.234 1.234 7 C -0.540 4.540 8 H 0.042 0.958 9 C 0.192 3.808 10 N -0.585 5.585 11 C 0.129 3.871 12 C 0.058 3.942 13 N -0.542 5.542 14 C 0.016 3.984 15 C 0.066 3.934 16 O -0.404 6.404 17 C 0.064 3.936 18 C 0.018 3.982 19 C 0.576 3.424 20 O -0.582 6.582 21 C -0.266 4.266 22 C -0.021 4.021 23 C -0.284 4.284 24 C 0.518 3.482 25 O -0.592 6.592 26 N -0.579 5.579 27 H 0.437 0.563 28 C 0.231 3.769 29 H 0.272 0.728 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.031 0.969 35 H 0.081 0.919 36 H 0.035 0.965 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.062 0.938 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.038 0.962 44 H 0.186 0.814 45 H 0.141 0.859 46 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.364 -6.802 -4.713 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.165 4.165 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.157 1.157 7 C -0.578 4.578 8 H 0.060 0.940 9 C 0.070 3.930 10 N -0.314 5.314 11 C 0.006 3.994 12 C -0.071 4.071 13 N -0.267 5.267 14 C -0.112 4.112 15 C -0.011 4.011 16 O -0.322 6.322 17 C -0.013 4.013 18 C -0.110 4.110 19 C 0.366 3.634 20 O -0.465 6.465 21 C -0.274 4.274 22 C -0.041 4.041 23 C -0.306 4.306 24 C 0.321 3.679 25 O -0.478 6.478 26 N -0.208 5.208 27 H 0.279 0.721 28 C 0.097 3.903 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.132 0.868 40 H 0.080 0.920 41 H 0.137 0.863 42 H 0.116 0.884 43 H 0.056 0.944 44 H 0.202 0.798 45 H 0.159 0.841 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 15.010 -6.819 -4.520 17.095 hybrid contribution 0.083 0.877 0.843 1.219 sum 15.093 -5.942 -3.677 16.632 Atomic orbital electron populations 1.70007 1.08199 1.28656 1.49355 1.25641 0.95270 1.02351 0.93282 0.86191 0.80507 0.79562 0.79995 1.18523 1.20953 1.15732 1.21337 0.90805 0.93647 1.51974 0.93950 1.20501 0.93193 0.79766 0.99528 1.47645 1.61015 1.15100 1.07604 1.21236 0.97669 0.96096 0.84433 1.22268 0.96452 0.98694 0.89640 1.62128 1.41856 1.05322 1.17443 1.22849 1.01742 0.87951 0.98633 1.22747 0.89205 0.99769 0.89351 1.87940 1.47724 1.25013 1.71564 1.22798 1.03593 0.79894 0.95020 1.22855 0.91000 1.01969 0.95160 1.17836 0.76831 0.85422 0.83331 1.90687 1.50665 1.18315 1.86823 1.19441 1.06464 1.04305 0.97209 1.23532 0.93677 0.88775 0.98107 1.21949 1.06208 1.07724 0.94708 1.17243 0.81747 0.80333 0.88560 1.90918 1.72295 1.54586 1.30023 1.43077 1.33893 1.27290 1.16571 0.72142 1.22580 0.93765 0.91760 0.82198 0.91897 0.91436 0.94023 0.90317 0.91095 0.95078 0.90073 0.94649 0.89643 0.91971 0.86787 0.92006 0.86335 0.88427 0.94366 0.79794 0.84092 0.76720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.54 13.96 21.44 0.30 -51.25 16 2 C 0.04 1.84 5.31 84.65 0.45 2.29 16 3 Si 0.92 37.36 27.31 68.60 1.87 39.23 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.23 -8.58 6.54 99.48 0.65 -7.93 16 7 C -0.54 -26.21 7.88 25.60 0.20 -26.01 16 8 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 9 C 0.19 7.51 3.71 85.64 0.32 7.83 16 10 N -0.59 -21.25 2.48 -830.02 -2.06 -23.30 16 11 C 0.13 4.26 5.31 86.38 0.46 4.72 16 12 C 0.06 1.61 5.28 86.30 0.46 2.06 16 13 N -0.54 -13.40 4.73 -895.20 -4.23 -17.63 16 14 C 0.02 0.38 5.44 86.31 0.47 0.85 16 15 C 0.07 1.32 7.01 72.02 0.50 1.83 16 16 O -0.40 -8.91 10.83 -148.98 -1.61 -10.52 16 17 C 0.06 1.14 7.01 72.01 0.50 1.65 16 18 C 0.02 0.36 5.64 86.31 0.49 0.85 16 19 C 0.58 20.30 7.51 86.67 0.65 20.95 16 20 O -0.58 -21.42 16.15 -4.02 -0.06 -21.49 16 21 C -0.27 -8.39 5.60 -20.08 -0.11 -8.50 16 22 C -0.02 -0.75 7.53 22.57 0.17 -0.58 16 23 C -0.28 -10.05 9.97 22.36 0.22 -9.82 16 24 C 0.52 16.76 7.67 84.89 0.65 17.41 16 25 O -0.59 -22.84 17.91 -5.21 -0.09 -22.93 16 26 N -0.58 -12.76 5.19 -318.44 -1.65 -14.41 16 27 H 0.44 6.25 8.88 -92.71 -0.82 5.43 16 28 C 0.23 5.12 10.75 84.21 0.91 6.02 16 29 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.07 2.59 3.19 -2.45 -0.01 2.59 16 31 H 0.04 1.55 7.57 -2.39 -0.02 1.54 16 32 H 0.08 2.83 8.03 -2.39 -0.02 2.81 16 33 H 0.07 2.41 5.80 -2.39 -0.01 2.39 16 34 H 0.03 0.90 8.12 -2.38 -0.02 0.88 16 35 H 0.08 2.16 8.04 -2.39 -0.02 2.15 16 36 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 2.09 6.38 -2.39 -0.02 2.07 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.10 1.72 8.09 -2.39 -0.02 1.70 16 43 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.19 7.72 2.58 -2.91 -0.01 7.71 16 45 H 0.14 5.09 8.06 -2.91 -0.02 5.07 16 46 H 0.22 3.07 7.79 -2.91 -0.02 3.05 16 Total: -1.00 -67.83 368.67 -1.05 -68.88 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.15 Total: 31.88 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 6.34 Total: 21.55 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -7.64 Total: -106.59 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -1.77 Total: -54.95 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 1.87 Total: 39.23 kcal Total: -67.83 -1.05 -68.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079726833.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.272 kcal (2) G-P(sol) polarization free energy of solvation -67.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds