Wall clock time and date at job start Tue Mar 31 2020 18:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00091 * 2 1 4 4 H 1.48501 * 109.46810 * 270.00074 * 3 2 1 5 5 H 1.48504 * 109.46931 * 29.99229 * 3 2 1 6 6 H 1.48493 * 109.47671 * 149.99593 * 3 2 1 7 7 C 1.37880 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99890 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99920 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.46498 * 119.99851 * 275.84585 * 10 9 7 12 12 C 1.53005 * 109.46850 * 269.99455 * 11 10 9 13 13 N 1.46899 * 109.47123 * 179.97438 * 12 11 10 14 14 C 1.47012 * 111.00046 * 293.63863 * 13 12 11 15 15 C 1.53108 * 109.25610 * 177.60786 * 14 13 12 16 16 O 1.43014 * 109.25651 * 56.84899 * 15 14 13 17 17 C 1.43012 * 113.73985 * 301.32751 * 16 15 14 18 18 C 1.47012 * 111.00142 * 170.00269 * 13 12 11 19 19 C 1.34772 * 120.00245 * 95.84057 * 10 9 7 20 20 O 1.21552 * 120.00153 * 184.89294 * 19 10 9 21 21 C 1.47857 * 119.99845 * 4.89029 * 19 10 9 22 22 C 1.39568 * 120.53025 * 132.07720 * 21 19 10 23 23 N 1.31653 * 120.68900 * 180.02562 * 22 21 19 24 24 C 1.31913 * 121.93957 * 359.97438 * 23 22 21 25 25 C 1.38807 * 121.00215 * 359.97438 * 24 23 22 26 26 O 1.35924 * 120.40368 * 180.02562 * 25 24 23 27 27 C 1.38880 * 119.19311 * 0.02562 * 25 24 23 28 28 H 0.96996 * 120.00388 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47597 * 59.99559 * 9 7 2 30 30 H 1.09008 * 109.47096 * 299.99635 * 9 7 2 31 31 H 1.08998 * 109.47457 * 29.99098 * 11 10 9 32 32 H 1.08997 * 109.47634 * 149.99922 * 11 10 9 33 33 H 1.08993 * 109.47484 * 300.00186 * 12 11 10 34 34 H 1.09007 * 109.47033 * 60.00209 * 12 11 10 35 35 H 1.08996 * 109.50950 * 297.53820 * 14 13 12 36 36 H 1.09002 * 109.50904 * 57.67272 * 14 13 12 37 37 H 1.08996 * 109.50414 * 296.90815 * 15 14 13 38 38 H 1.08999 * 109.53856 * 176.80750 * 15 14 13 39 39 H 1.09004 * 109.50442 * 298.74000 * 17 16 15 40 40 H 1.08995 * 109.54472 * 178.63346 * 17 16 15 41 41 H 1.09005 * 109.50230 * 302.32961 * 18 13 12 42 42 H 1.08999 * 109.50864 * 62.41284 * 18 13 12 43 43 H 1.07999 * 119.65591 * 359.97438 * 22 21 19 44 44 H 1.08001 * 119.49629 * 180.02562 * 24 23 22 45 45 H 0.96701 * 114.00322 * 269.98371 * 26 25 24 46 46 H 1.08004 * 120.87941 * 180.26968 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.7772 -4.0854 -1.2616 12 6 1.8864 -5.1826 -1.8478 13 7 2.4618 -5.6563 -3.1137 14 6 2.4248 -4.6011 -4.1367 15 6 3.0865 -5.1164 -5.4177 16 8 2.4219 -6.3084 -5.8451 17 6 2.4393 -7.3574 -4.8732 18 6 1.7712 -6.8648 -3.5868 19 6 2.5507 -4.2020 1.1616 20 8 3.4061 -5.0655 1.1726 21 6 1.8915 -3.7983 2.4220 22 6 1.3962 -4.7608 3.3030 23 7 0.8083 -4.4048 4.4259 24 6 0.6624 -3.1387 4.7663 25 6 1.1278 -2.1198 3.9466 26 8 0.9714 -0.8193 4.3096 27 6 1.7552 -2.4453 2.7511 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8904 31 1 2.8416 -3.2553 -1.9650 32 1 3.7746 -4.4858 -1.0797 33 1 1.8219 -6.0127 -1.1445 34 1 0.8890 -4.7822 -2.0298 35 1 1.3893 -4.3320 -4.3448 36 1 2.9637 -3.7251 -3.7757 37 1 4.1363 -5.3348 -5.2225 38 1 3.0113 -4.3582 -6.1972 39 1 3.4704 -7.6410 -4.6622 40 1 1.8960 -8.2202 -5.2582 41 1 1.8330 -7.6413 -2.8242 42 1 0.7250 -6.6321 -3.7853 43 1 1.4956 -5.8086 3.0607 44 1 0.1741 -2.8913 5.6973 45 1 0.1468 -0.4207 3.9993 46 1 2.1316 -1.6745 2.0948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109042523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:21 Heat of formation + Delta-G solvation = -72.409438 kcal Electronic energy + Delta-G solvation = -29695.112884 eV Core-core repulsion = 25585.519241 eV Total energy + Delta-G solvation = -4109.593643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.40020 -39.61094 -38.74583 -36.81690 -36.15818 -35.04088 -32.88004 -32.14851 -31.25789 -29.92073 -29.62824 -27.50056 -26.22678 -24.10668 -24.00017 -23.13915 -23.06023 -21.85573 -20.37398 -19.29517 -17.69297 -16.94021 -16.71826 -16.59643 -16.47227 -16.24402 -16.12414 -15.52304 -15.18708 -15.07163 -14.80121 -14.58922 -14.49839 -14.10168 -13.52037 -13.34745 -13.04879 -12.90700 -12.73920 -12.54579 -12.35495 -12.22365 -12.03476 -11.50677 -11.45782 -11.42156 -11.12395 -11.02279 -10.94056 -10.74764 -10.49341 -10.31991 -9.99463 -9.78886 -9.74376 -9.28819 -8.89733 -8.73770 -8.60232 -8.41158 -7.93840 -6.40807 -4.50215 1.09231 1.53786 3.10333 3.14136 3.19040 3.23148 3.44063 3.77176 3.99977 4.06450 4.17646 4.39019 4.75738 4.80969 4.89454 4.94319 4.96782 5.07630 5.09848 5.18548 5.21490 5.39141 5.43579 5.48661 5.49951 5.57365 5.71941 5.75238 5.77309 5.79972 5.88169 5.91199 6.17264 6.33435 6.39851 6.49843 6.64138 6.83379 6.93378 6.95137 6.99100 7.06145 7.31433 7.53391 7.80053 7.83753 8.06343 8.15421 8.55096 8.74868 9.18312 10.64357 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010708 B = 0.003892 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.261075 B = 7192.960366 C = 9256.648500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.072 3.928 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.231 3.769 10 N -0.586 5.586 11 C 0.125 3.875 12 C 0.044 3.956 13 N -0.533 5.533 14 C 0.012 3.988 15 C 0.065 3.935 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.018 3.982 19 C 0.563 3.437 20 O -0.557 6.557 21 C -0.157 4.157 22 C 0.127 3.873 23 N -0.480 5.480 24 C 0.082 3.918 25 C 0.048 3.952 26 O -0.491 6.491 27 C -0.052 4.052 28 H 0.268 0.732 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.044 0.956 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.041 0.959 43 H 0.159 0.841 44 H 0.157 0.843 45 H 0.394 0.606 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.028 -7.288 -3.337 8.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.133 4.133 3 Si 0.721 3.279 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.084 0.916 9 C 0.111 3.889 10 N -0.316 5.316 11 C 0.002 3.998 12 C -0.084 4.084 13 N -0.258 5.258 14 C -0.116 4.116 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.350 3.650 20 O -0.438 6.438 21 C -0.162 4.162 22 C -0.031 4.031 23 N -0.190 5.190 24 C -0.075 4.075 25 C 0.001 3.999 26 O -0.300 6.300 27 C -0.078 4.078 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.060 0.940 43 H 0.176 0.824 44 H 0.174 0.826 45 H 0.250 0.750 46 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.916 -8.428 -2.621 8.873 hybrid contribution -0.689 2.182 -0.659 2.381 sum 0.226 -6.246 -3.280 7.059 Atomic orbital electron populations 1.69924 1.06026 1.27679 1.48347 1.24945 0.94857 0.99324 0.94163 0.86531 0.80134 0.82695 0.78510 1.20362 1.20800 1.19470 1.21459 0.93863 0.90295 1.52856 0.91647 1.19646 0.87695 0.82595 0.98941 1.48086 1.44846 1.33942 1.04743 1.21209 0.97209 0.96077 0.85331 1.22494 0.96741 0.98849 0.90353 1.62129 1.55086 1.05175 1.03458 1.22887 1.00756 0.95442 0.92531 1.22682 0.96025 0.86976 0.95553 1.87958 1.77966 1.23733 1.41100 1.22642 1.00702 0.90006 0.87841 1.22766 0.96510 0.93800 0.97938 1.18094 0.82086 0.81296 0.83535 1.90721 1.32593 1.33556 1.86889 1.20897 1.03439 0.94431 0.97441 1.22721 0.92466 0.99548 0.88395 1.67681 1.15236 1.18871 1.17208 1.23181 0.96875 0.87878 0.99608 1.19420 1.01098 0.85255 0.94124 1.84777 1.45613 1.21746 1.77884 1.23268 0.92507 0.97341 0.94635 0.92229 0.94743 0.93887 0.90073 0.89769 0.90592 0.94312 0.93734 0.88845 0.92229 0.88489 0.92261 0.88679 0.89661 0.94029 0.82382 0.82610 0.74971 0.79889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.87 13.29 55.43 0.74 -21.14 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 19.04 29.54 -169.99 -5.02 14.01 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 7 C -0.55 -12.79 6.87 -34.44 -0.24 -13.03 16 8 H 0.07 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.23 5.02 4.67 -5.20 -0.02 5.00 16 10 N -0.59 -11.57 2.46 -176.17 -0.43 -12.00 16 11 C 0.13 2.19 5.40 -4.04 -0.02 2.17 16 12 C 0.04 0.68 5.28 -3.82 -0.02 0.66 16 13 N -0.53 -7.28 4.73 -234.30 -1.11 -8.38 16 14 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 15 C 0.06 0.73 7.01 37.21 0.26 0.99 16 16 O -0.39 -4.86 10.83 -35.23 -0.38 -5.25 16 17 C 0.07 0.69 7.01 37.21 0.26 0.95 16 18 C 0.02 0.21 5.64 -3.71 -0.02 0.19 16 19 C 0.56 11.43 7.27 -12.33 -0.09 11.34 16 20 O -0.56 -12.22 16.58 5.32 0.09 -12.13 16 21 C -0.16 -3.00 4.96 -104.84 -0.52 -3.52 16 22 C 0.13 2.20 10.88 -17.13 -0.19 2.01 16 23 N -0.48 -8.09 10.34 -12.79 -0.13 -8.22 16 24 C 0.08 1.29 11.13 -17.31 -0.19 1.10 16 25 C 0.05 0.82 6.73 -39.13 -0.26 0.56 16 26 O -0.49 -7.81 13.52 -19.50 -0.26 -8.07 16 27 C -0.05 -1.00 7.59 -38.72 -0.29 -1.30 16 28 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 29 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 30 H 0.04 0.98 5.39 -51.92 -0.28 0.70 16 31 H 0.08 1.41 6.44 -51.93 -0.33 1.07 16 32 H 0.08 1.54 7.36 -51.93 -0.38 1.16 16 33 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 34 H 0.04 0.63 8.12 -51.93 -0.42 0.20 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.19 6.38 -51.93 -0.33 0.86 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.16 2.46 8.06 -52.49 -0.42 2.04 16 44 H 0.16 1.96 8.06 -52.49 -0.42 1.53 16 45 H 0.39 4.87 9.06 45.56 0.41 5.29 16 46 H 0.18 3.96 4.83 -52.48 -0.25 3.70 16 LS Contribution 376.86 15.07 5.68 5.68 Total: -1.00 -28.13 376.86 -8.08 -36.21 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.78 Total: 10.42 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -1.47 Total: 8.87 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.94 Total: -49.74 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.56 Total: -25.45 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.13 -8.08 -36.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109042523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.202 kcal (2) G-P(sol) polarization free energy of solvation -28.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds