Wall clock time and date at job start Tue Mar 31 2020 18:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00091 * 2 1 4 4 H 1.48501 * 109.46810 * 270.00074 * 3 2 1 5 5 H 1.48504 * 109.46931 * 29.99229 * 3 2 1 6 6 H 1.48493 * 109.47671 * 149.99593 * 3 2 1 7 7 C 1.37880 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99890 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99920 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.46498 * 119.99851 * 275.84585 * 10 9 7 12 12 C 1.53005 * 109.46850 * 269.99455 * 11 10 9 13 13 N 1.46899 * 109.47123 * 179.97438 * 12 11 10 14 14 C 1.47012 * 111.00046 * 293.63863 * 13 12 11 15 15 C 1.53108 * 109.25610 * 177.60786 * 14 13 12 16 16 O 1.43014 * 109.25651 * 56.84899 * 15 14 13 17 17 C 1.43012 * 113.73985 * 301.32751 * 16 15 14 18 18 C 1.47012 * 111.00142 * 170.00269 * 13 12 11 19 19 C 1.34772 * 120.00245 * 95.84057 * 10 9 7 20 20 O 1.21552 * 120.00153 * 184.89294 * 19 10 9 21 21 C 1.47857 * 119.99845 * 4.89029 * 19 10 9 22 22 C 1.39568 * 120.53025 * 132.07720 * 21 19 10 23 23 N 1.31653 * 120.68900 * 180.02562 * 22 21 19 24 24 C 1.31913 * 121.93957 * 359.97438 * 23 22 21 25 25 C 1.38807 * 121.00215 * 359.97438 * 24 23 22 26 26 O 1.35924 * 120.40368 * 180.02562 * 25 24 23 27 27 C 1.38880 * 119.19311 * 0.02562 * 25 24 23 28 28 H 0.96996 * 120.00388 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47597 * 59.99559 * 9 7 2 30 30 H 1.09008 * 109.47096 * 299.99635 * 9 7 2 31 31 H 1.08998 * 109.47457 * 29.99098 * 11 10 9 32 32 H 1.08997 * 109.47634 * 149.99922 * 11 10 9 33 33 H 1.08993 * 109.47484 * 300.00186 * 12 11 10 34 34 H 1.09007 * 109.47033 * 60.00209 * 12 11 10 35 35 H 1.08996 * 109.50950 * 297.53820 * 14 13 12 36 36 H 1.09002 * 109.50904 * 57.67272 * 14 13 12 37 37 H 1.08996 * 109.50414 * 296.90815 * 15 14 13 38 38 H 1.08999 * 109.53856 * 176.80750 * 15 14 13 39 39 H 1.09004 * 109.50442 * 298.74000 * 17 16 15 40 40 H 1.08995 * 109.54472 * 178.63346 * 17 16 15 41 41 H 1.09005 * 109.50230 * 302.32961 * 18 13 12 42 42 H 1.08999 * 109.50864 * 62.41284 * 18 13 12 43 43 H 1.07999 * 119.65591 * 359.97438 * 22 21 19 44 44 H 1.08001 * 119.49629 * 180.02562 * 24 23 22 45 45 H 0.96701 * 114.00322 * 269.98371 * 26 25 24 46 46 H 1.08004 * 120.87941 * 180.26968 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.7772 -4.0854 -1.2616 12 6 1.8864 -5.1826 -1.8478 13 7 2.4618 -5.6563 -3.1137 14 6 2.4248 -4.6011 -4.1367 15 6 3.0865 -5.1164 -5.4177 16 8 2.4219 -6.3084 -5.8451 17 6 2.4393 -7.3574 -4.8732 18 6 1.7712 -6.8648 -3.5868 19 6 2.5507 -4.2020 1.1616 20 8 3.4061 -5.0655 1.1726 21 6 1.8915 -3.7983 2.4220 22 6 1.3962 -4.7608 3.3030 23 7 0.8083 -4.4048 4.4259 24 6 0.6624 -3.1387 4.7663 25 6 1.1278 -2.1198 3.9466 26 8 0.9714 -0.8193 4.3096 27 6 1.7552 -2.4453 2.7511 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8904 31 1 2.8416 -3.2553 -1.9650 32 1 3.7746 -4.4858 -1.0797 33 1 1.8219 -6.0127 -1.1445 34 1 0.8890 -4.7822 -2.0298 35 1 1.3893 -4.3320 -4.3448 36 1 2.9637 -3.7251 -3.7757 37 1 4.1363 -5.3348 -5.2225 38 1 3.0113 -4.3582 -6.1972 39 1 3.4704 -7.6410 -4.6622 40 1 1.8960 -8.2202 -5.2582 41 1 1.8330 -7.6413 -2.8242 42 1 0.7250 -6.6321 -3.7853 43 1 1.4956 -5.8086 3.0607 44 1 0.1741 -2.8913 5.6973 45 1 0.1468 -0.4207 3.9993 46 1 2.1316 -1.6745 2.0948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109042523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:21 Heat of formation + Delta-G solvation = -93.201328 kcal Electronic energy + Delta-G solvation = -29696.014488 eV Core-core repulsion = 25585.519241 eV Total energy + Delta-G solvation = -4110.495247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.84499 -40.69274 -40.15679 -38.11507 -37.45865 -36.52537 -34.62923 -33.58468 -32.19698 -31.26696 -30.97487 -29.18850 -27.45341 -25.49753 -25.04585 -24.80063 -24.44356 -23.14664 -21.38809 -20.77504 -19.14898 -18.64517 -18.17189 -17.96012 -17.75868 -17.57500 -17.15030 -16.95203 -16.40856 -16.27314 -16.00991 -15.95996 -15.84549 -15.40592 -14.87023 -14.60331 -14.52177 -14.36621 -14.26155 -14.01389 -13.69677 -13.51882 -13.19417 -13.14882 -12.91813 -12.69161 -12.52027 -12.36006 -12.32938 -12.16438 -11.90918 -11.77087 -11.47724 -11.37246 -10.80468 -10.72262 -10.56794 -10.31531 -9.95060 -9.66393 -9.44869 -8.25956 -6.40045 -0.28116 0.12428 1.39324 1.44465 1.51061 1.60651 2.00169 2.37418 2.66476 2.79032 2.96562 3.03384 3.08323 3.45415 3.57600 3.81272 3.85862 3.90976 3.97444 4.02430 4.07224 4.18440 4.29146 4.35512 4.37188 4.43615 4.51019 4.57208 4.70428 4.74112 4.77075 4.80860 4.89447 4.93838 5.00123 5.01234 5.13426 5.21104 5.45133 5.57826 5.68376 5.85215 5.89779 5.96893 6.15879 6.40136 6.64242 6.71316 6.81782 7.10175 7.31509 8.78971 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010708 B = 0.003892 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.261075 B = 7192.960366 C = 9256.648500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.041 3.959 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.053 0.947 9 C 0.250 3.750 10 N -0.587 5.587 11 C 0.128 3.872 12 C 0.060 3.940 13 N -0.538 5.538 14 C 0.011 3.989 15 C 0.068 3.932 16 O -0.403 6.403 17 C 0.066 3.934 18 C 0.017 3.983 19 C 0.562 3.438 20 O -0.577 6.577 21 C -0.174 4.174 22 C 0.130 3.870 23 N -0.481 5.481 24 C 0.096 3.904 25 C 0.048 3.952 26 O -0.495 6.495 27 C -0.069 4.069 28 H 0.271 0.729 29 H 0.018 0.982 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.028 0.972 35 H 0.034 0.966 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.115 0.885 39 H 0.064 0.936 40 H 0.120 0.880 41 H 0.095 0.905 42 H 0.036 0.964 43 H 0.174 0.826 44 H 0.195 0.805 45 H 0.409 0.591 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 -7.581 -2.935 8.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.162 4.162 3 Si 0.771 3.229 4 H -0.203 1.203 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.071 0.929 9 C 0.129 3.871 10 N -0.316 5.316 11 C 0.005 3.995 12 C -0.069 4.069 13 N -0.263 5.263 14 C -0.117 4.117 15 C -0.009 4.009 16 O -0.322 6.322 17 C -0.011 4.011 18 C -0.111 4.111 19 C 0.350 3.650 20 O -0.459 6.459 21 C -0.179 4.179 22 C -0.028 4.028 23 N -0.191 5.191 24 C -0.061 4.061 25 C 0.001 3.999 26 O -0.306 6.306 27 C -0.095 4.095 28 H 0.080 0.920 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.137 0.863 41 H 0.113 0.887 42 H 0.054 0.946 43 H 0.191 0.809 44 H 0.211 0.789 45 H 0.268 0.732 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.693 -8.722 -2.240 9.032 hybrid contribution -0.630 2.279 -0.741 2.478 sum 0.063 -6.443 -2.981 7.099 Atomic orbital electron populations 1.69985 1.06884 1.28360 1.49093 1.25440 0.95383 1.01471 0.93904 0.85747 0.78883 0.79959 0.78303 1.20265 1.20228 1.19999 1.21494 0.93260 0.91196 1.52643 0.92869 1.19288 0.87502 0.82680 0.97603 1.48079 1.44445 1.33497 1.05600 1.21247 0.97138 0.96624 0.84516 1.22228 0.95646 0.97762 0.91287 1.62148 1.55170 1.06018 1.03010 1.22920 1.00284 0.95291 0.93167 1.22741 0.95930 0.87174 0.95056 1.87943 1.78169 1.24276 1.41823 1.22786 1.01259 0.90161 0.86876 1.22873 0.96186 0.93085 0.99002 1.18319 0.81799 0.80899 0.84007 1.90695 1.33486 1.34505 1.87244 1.20852 1.04764 0.94832 0.97418 1.22939 0.91796 0.99930 0.88116 1.67795 1.15120 1.19410 1.16732 1.23702 0.95362 0.86904 1.00164 1.19461 1.00703 0.86189 0.93501 1.84737 1.46881 1.21254 1.77751 1.23075 0.93968 0.96871 0.95635 0.92006 0.96441 0.94642 0.90267 0.90567 0.91045 0.95336 0.94801 0.89275 0.91645 0.86754 0.91760 0.86260 0.88663 0.94562 0.80884 0.78854 0.73178 0.82387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.96 13.29 21.45 0.28 -44.68 16 2 C 0.04 1.95 5.46 84.66 0.46 2.41 16 3 Si 0.95 38.98 29.54 68.60 2.03 41.01 16 4 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.55 -26.15 6.87 25.60 0.18 -25.97 16 8 H 0.05 2.64 7.81 -2.91 -0.02 2.61 16 9 C 0.25 11.17 4.67 85.63 0.40 11.57 16 10 N -0.59 -23.83 2.46 -829.57 -2.04 -25.87 16 11 C 0.13 4.59 5.40 86.38 0.47 5.06 16 12 C 0.06 1.88 5.28 86.31 0.46 2.33 16 13 N -0.54 -14.59 4.73 -895.20 -4.23 -18.82 16 14 C 0.01 0.29 5.44 86.32 0.47 0.76 16 15 C 0.07 1.45 7.01 72.02 0.50 1.95 16 16 O -0.40 -9.48 10.83 -148.98 -1.61 -11.09 16 17 C 0.07 1.28 7.01 72.01 0.50 1.78 16 18 C 0.02 0.37 5.64 86.31 0.49 0.86 16 19 C 0.56 23.24 7.27 86.79 0.63 23.87 16 20 O -0.58 -25.64 16.58 -3.88 -0.06 -25.71 16 21 C -0.17 -6.65 4.96 -20.00 -0.10 -6.75 16 22 C 0.13 4.37 10.88 85.04 0.93 5.30 16 23 N -0.48 -15.20 10.34 -194.39 -2.01 -17.21 16 24 C 0.10 2.78 11.13 84.82 0.94 3.72 16 25 C 0.05 1.60 6.73 22.56 0.15 1.75 16 26 O -0.49 -14.95 13.52 -92.69 -1.25 -16.20 16 27 C -0.07 -2.70 7.59 22.83 0.17 -2.53 16 28 H 0.27 12.77 8.31 -92.71 -0.77 12.00 16 29 H 0.02 0.84 8.11 -2.39 -0.02 0.82 16 30 H 0.04 1.66 5.39 -2.38 -0.01 1.65 16 31 H 0.08 2.84 6.44 -2.39 -0.02 2.83 16 32 H 0.08 2.86 7.36 -2.39 -0.02 2.85 16 33 H 0.07 2.30 8.04 -2.39 -0.02 2.28 16 34 H 0.03 0.95 8.12 -2.38 -0.02 0.93 16 35 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 2.31 6.38 -2.39 -0.02 2.30 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.12 1.72 8.14 -2.39 -0.02 1.71 16 41 H 0.10 1.95 8.09 -2.38 -0.02 1.93 16 42 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.17 5.19 8.06 -2.91 -0.02 5.17 16 44 H 0.19 4.08 8.06 -2.91 -0.02 4.05 16 45 H 0.41 9.48 9.06 -74.06 -0.67 8.81 16 46 H 0.16 7.00 4.83 -2.91 -0.01 6.99 16 Total: -1.00 -59.24 376.86 -1.91 -61.15 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.34 Total: 31.30 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: 6.65 Total: 26.11 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -8.00 Total: -106.57 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -2.93 Total: -52.99 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -59.24 -1.91 -61.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109042523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.051 kcal (2) G-P(sol) polarization free energy of solvation -59.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds