Wall clock time and date at job start Tue Mar 31 2020 18:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99578 * 2 1 4 4 H 1.48504 * 109.46916 * 275.08437 * 3 2 1 5 5 H 1.48494 * 109.47224 * 35.08726 * 3 2 1 6 6 H 1.48504 * 109.46770 * 155.08829 * 3 2 1 7 7 C 1.38805 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99986 * 336.09071 * 7 2 1 9 9 N 1.36934 * 120.00368 * 156.09210 * 7 2 1 10 10 C 1.46508 * 119.99787 * 322.16026 * 9 7 2 11 11 C 1.50696 * 109.47046 * 269.99907 * 10 9 7 12 12 O 1.21236 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00029 * 180.02562 * 11 10 9 14 14 C 1.34772 * 120.00269 * 180.02562 * 13 11 10 15 15 O 1.21538 * 119.99871 * 359.97438 * 14 13 11 16 16 N 1.34775 * 120.00269 * 180.02562 * 14 13 11 17 17 C 1.46503 * 120.00061 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.46894 * 179.97438 * 17 16 14 19 19 C 1.34510 * 125.78695 * 90.00283 * 18 17 16 20 20 C 1.41393 * 106.84020 * 179.97438 * 19 18 17 21 21 C 1.34512 * 106.83678 * 0.02562 * 20 19 18 22 22 O 1.34303 * 125.78988 * 269.69024 * 18 17 16 23 23 C 1.46501 * 120.00240 * 142.15761 * 9 7 2 24 24 C 1.54263 * 110.03165 * 297.66914 * 23 9 7 25 25 C 1.54969 * 104.15549 * 95.75541 * 24 23 9 26 26 C 1.54888 * 102.77789 * 37.88956 * 25 24 23 27 27 C 1.53872 * 110.03247 * 54.89139 * 23 9 7 28 28 H 0.96995 * 120.00359 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47091 * 29.99778 * 10 9 7 30 30 H 1.09000 * 109.47030 * 149.99472 * 10 9 7 31 31 H 0.97003 * 119.99728 * 359.97438 * 13 11 10 32 32 H 0.97003 * 119.99728 * 359.97438 * 16 14 13 33 33 H 1.09000 * 109.47162 * 299.99841 * 17 16 14 34 34 H 1.08997 * 109.46966 * 59.99986 * 17 16 14 35 35 H 1.07998 * 126.58162 * 0.03243 * 19 18 17 36 36 H 1.08002 * 126.57882 * 179.97438 * 20 19 18 37 37 H 1.07998 * 125.78119 * 180.02562 * 21 20 19 38 38 H 1.08999 * 110.01229 * 176.28250 * 23 9 7 39 39 H 1.09000 * 110.48388 * 214.39889 * 24 23 9 40 40 H 1.09002 * 110.48871 * 337.05106 * 24 23 9 41 41 H 1.08990 * 110.72330 * 279.57307 * 25 24 23 42 42 H 1.09003 * 110.91870 * 156.29553 * 25 24 23 43 43 H 1.09002 * 110.48416 * 203.40492 * 26 25 24 44 44 H 1.08998 * 110.60377 * 80.81315 * 26 25 24 45 45 H 1.08999 * 110.03093 * 359.95017 * 27 23 9 46 46 H 1.08996 * 110.03145 * 121.37896 * 27 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3901 2.1085 -1.3946 5 1 1.5055 2.6192 0.8048 6 1 3.5974 1.4116 0.5898 7 6 2.0103 -1.2021 0.0005 8 1 1.5398 -2.0972 0.3800 9 7 3.2915 -1.2532 -0.4800 10 6 3.6665 -0.4582 -1.6521 11 6 3.4337 -1.2662 -2.9026 12 8 2.9981 -2.3948 -2.8227 13 7 3.7106 -0.7347 -4.1097 14 6 3.5019 -1.4571 -5.2281 15 8 3.0644 -2.5882 -5.1481 16 7 3.7794 -0.9258 -6.4353 17 6 3.5530 -1.7114 -7.6510 18 6 3.9393 -0.8938 -8.8565 19 6 5.1584 -0.8563 -9.4237 20 6 5.0730 0.0325 -10.5200 21 6 3.8069 0.4854 -10.5566 22 8 3.1233 -0.0835 -9.5503 23 6 4.2873 -2.1028 0.1779 24 6 4.5100 -1.6293 1.6290 25 6 3.5783 -2.5372 2.4711 26 6 3.7010 -3.9076 1.7598 27 6 3.7728 -3.5506 0.2607 28 1 -0.4850 0.8400 -0.0004 29 1 3.0602 0.4470 -1.6863 30 1 4.7202 -0.1873 -1.5854 31 1 4.0595 0.1682 -4.1736 32 1 4.1290 -0.0232 -6.4991 33 1 4.1587 -2.6170 -7.6164 34 1 2.4992 -1.9814 -7.7180 35 1 6.0342 -1.4014 -9.1038 36 1 5.8713 0.2976 -11.1973 37 1 3.4067 1.1839 -11.2766 38 1 5.2271 -2.0715 -0.3735 39 1 5.5499 -1.7738 1.9221 40 1 4.2239 -0.5831 1.7371 41 1 2.5512 -2.1742 2.4358 42 1 3.9275 -2.6042 3.5015 43 1 2.8248 -4.5231 1.9638 44 1 4.6091 -4.4225 2.0732 45 1 2.7818 -3.6209 -0.1878 46 1 4.4628 -4.2219 -0.2504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156720009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:06 Heat of formation + Delta-G solvation = -13.157629 kcal Electronic energy + Delta-G solvation = -29097.909891 eV Core-core repulsion = 24990.885599 eV Total energy + Delta-G solvation = -4107.024292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.92669 -40.62404 -38.38363 -37.38097 -35.01550 -34.06623 -33.97490 -33.27232 -31.51091 -30.57470 -28.07401 -27.81687 -26.73883 -26.01261 -23.09274 -22.10713 -21.73109 -20.92719 -20.13394 -19.81069 -18.96395 -18.88902 -17.71910 -16.76581 -16.45687 -16.29082 -15.92099 -15.37786 -15.32308 -14.91308 -14.88500 -14.29569 -14.17838 -13.88803 -13.59257 -13.22437 -13.18255 -13.03083 -12.97024 -12.75440 -12.41342 -12.27084 -12.01556 -11.34907 -11.00595 -10.81396 -10.54386 -10.41436 -10.31193 -10.29475 -10.25142 -10.12453 -9.87907 -9.82006 -9.58398 -9.43868 -9.19718 -9.13769 -8.85998 -8.50304 -6.90205 -6.02638 -3.42594 1.23162 2.17250 2.53839 2.71129 2.85335 3.15549 3.38812 3.41255 3.76019 4.14750 4.24719 4.43470 4.66111 4.69877 4.82497 5.10505 5.22513 5.28098 5.36990 5.43942 5.45178 5.58212 5.58358 5.71450 5.72902 5.84035 6.07216 6.10640 6.12408 6.20942 6.28564 6.40346 6.43245 6.46731 6.52887 6.65193 6.72905 6.77167 6.79694 6.93147 7.09532 7.12970 7.35752 7.70165 7.99831 8.41961 8.61826 8.76145 8.95812 9.65638 10.02678 11.12479 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.002725 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.585400 B =10270.888423 C =11142.931769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.034 3.966 3 Si 0.862 3.138 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.251 4.251 8 H 0.085 0.915 9 N -0.569 5.569 10 C 0.120 3.880 11 C 0.480 3.520 12 O -0.442 6.442 13 N -0.698 5.698 14 C 0.693 3.307 15 O -0.533 6.533 16 N -0.745 5.745 17 C 0.219 3.781 18 C -0.033 4.033 19 C -0.185 4.185 20 C -0.219 4.219 21 C -0.031 4.031 22 O -0.170 6.170 23 C 0.176 3.824 24 C -0.130 4.130 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.130 4.130 28 H 0.263 0.737 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.402 0.598 32 H 0.398 0.602 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.204 0.796 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.084 0.916 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.289 3.486 -15.273 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.167 4.167 3 Si 0.691 3.309 4 H -0.216 1.216 5 H -0.226 1.226 6 H -0.187 1.187 7 C -0.380 4.380 8 H 0.103 0.897 9 N -0.288 5.288 10 C -0.012 4.012 11 C 0.263 3.737 12 O -0.306 6.306 13 N -0.366 5.366 14 C 0.394 3.606 15 O -0.405 6.405 16 N -0.405 5.405 17 C 0.096 3.904 18 C -0.083 4.083 19 C -0.205 4.205 20 C -0.238 4.238 21 C -0.099 4.099 22 O -0.066 6.066 23 C 0.070 3.930 24 C -0.169 4.169 25 C -0.154 4.154 26 C -0.157 4.157 27 C -0.168 4.168 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.235 0.765 32 H 0.232 0.768 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.221 0.779 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.102 0.898 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.088 1.767 -14.926 19.288 hybrid contribution 0.913 2.151 -0.610 2.415 sum 13.001 3.917 -15.536 20.633 Atomic orbital electron populations 1.69915 1.05977 1.26630 1.50473 1.25490 0.95029 0.97496 0.98647 0.87173 0.81311 0.85439 0.76954 1.21605 1.22550 1.18723 1.18682 0.87179 0.94588 1.37533 0.89710 1.43966 1.09340 1.51032 1.24419 1.21565 1.00043 0.95032 0.84515 1.23654 0.77064 0.89328 0.83648 1.90742 1.36404 1.18114 1.85376 1.44941 1.65419 1.19332 1.06897 1.16348 0.79008 0.85063 0.80201 1.91058 1.47072 1.16906 1.85416 1.45361 1.71758 1.19064 1.04290 1.19410 1.03291 0.91076 0.76660 1.22345 0.89779 0.98414 0.97791 1.21735 0.97918 1.02909 0.97957 1.21892 0.98007 1.02274 1.01657 1.24151 0.91931 1.00952 0.92858 1.84074 1.39514 1.47454 1.35524 1.21074 0.90173 0.90114 0.91681 1.22741 0.97166 1.00481 0.96515 1.22441 1.01541 0.94909 0.96533 1.22273 0.99803 0.97228 0.96391 1.22521 1.02819 0.96402 0.95107 0.92686 0.89633 0.90666 0.76457 0.76777 0.88216 0.89607 0.83083 0.83236 0.77919 0.93148 0.93359 0.91170 0.89998 0.93610 0.92737 0.93271 0.89783 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.97 55.49 0.78 -25.75 16 2 C 0.03 0.93 5.27 -17.43 -0.09 0.84 16 3 Si 0.86 20.10 25.19 -169.99 -4.28 15.82 16 4 H -0.29 -6.30 6.64 56.52 0.38 -5.92 16 5 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -5.82 7.05 56.52 0.40 -5.42 16 7 C -0.25 -6.69 7.77 -15.06 -0.12 -6.81 16 8 H 0.09 2.52 6.84 -52.48 -0.36 2.16 16 9 N -0.57 -12.88 1.45 -165.75 -0.24 -13.12 16 10 C 0.12 2.38 4.97 -5.19 -0.03 2.36 16 11 C 0.48 9.91 7.84 -10.99 -0.09 9.82 16 12 O -0.44 -11.35 14.83 -18.21 -0.27 -11.62 16 13 N -0.70 -11.04 5.24 -15.78 -0.08 -11.12 16 14 C 0.69 11.60 8.50 -86.92 -0.74 10.86 16 15 O -0.53 -11.75 14.74 -18.47 -0.27 -12.02 16 16 N -0.75 -8.66 5.55 -66.43 -0.37 -9.03 16 17 C 0.22 2.36 6.20 -5.19 -0.03 2.33 16 18 C -0.03 -0.32 6.69 -35.63 -0.24 -0.55 16 19 C -0.19 -1.55 10.81 -39.70 -0.43 -1.98 16 20 C -0.22 -1.61 10.91 -39.70 -0.43 -2.04 16 21 C -0.03 -0.22 12.09 29.42 0.36 0.13 16 22 O -0.17 -1.71 10.65 5.71 0.06 -1.64 16 23 C 0.18 3.48 3.47 -66.81 -0.23 3.25 16 24 C -0.13 -2.37 6.17 -25.03 -0.15 -2.52 16 25 C -0.12 -2.11 6.57 -24.70 -0.16 -2.27 16 26 C -0.12 -2.07 6.83 -25.07 -0.17 -2.25 16 27 C -0.13 -2.58 6.15 -25.61 -0.16 -2.73 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.09 1.79 3.42 -51.93 -0.18 1.61 16 30 H 0.08 1.19 7.97 -51.93 -0.41 0.78 16 31 H 0.40 4.38 8.71 -40.82 -0.36 4.03 16 32 H 0.40 3.47 8.48 -40.82 -0.35 3.12 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.20 0.73 8.06 -52.49 -0.42 0.30 16 38 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.40 7.98 -51.93 -0.41 0.99 16 41 H 0.08 1.71 7.16 -51.93 -0.37 1.34 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 2.00 6.70 -51.93 -0.35 1.65 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 377.25 15.07 5.69 5.69 Total: -1.00 -36.61 377.25 -8.30 -44.90 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.59 Total: 9.46 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -2.71 Total: 8.44 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.08 Total: -59.02 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.48 Total: -25.29 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.28 Total: 15.82 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.61 -8.30 -44.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156720009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.746 kcal (2) G-P(sol) polarization free energy of solvation -36.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds