Wall clock time and date at job start Tue Mar 31 2020 18:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00737 * 2 1 4 4 H 1.48499 * 109.47157 * 270.00443 * 3 2 1 5 5 H 1.48505 * 109.46933 * 30.00033 * 3 2 1 6 6 H 1.48498 * 109.47481 * 149.99864 * 3 2 1 7 7 C 1.37881 * 119.99557 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00107 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00281 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47702 * 179.97438 * 9 7 2 11 11 C 1.46493 * 120.00029 * 275.27437 * 10 9 7 12 12 C 1.50705 * 109.46892 * 269.99655 * 11 10 9 13 13 C 1.34514 * 125.78737 * 89.71429 * 12 11 10 14 14 C 1.41389 * 106.83632 * 179.88579 * 13 12 11 15 15 C 1.34512 * 106.84050 * 0.37670 * 14 13 12 16 16 O 1.34300 * 108.42297 * 359.76776 * 15 14 13 17 17 C 1.34774 * 120.00062 * 95.26744 * 10 9 7 18 18 O 1.21283 * 119.99931 * 175.88033 * 17 10 9 19 19 C 1.50701 * 120.00230 * 355.88057 * 17 10 9 20 20 H 1.08998 * 109.49524 * 37.15790 * 19 17 10 21 21 C 1.53037 * 109.49994 * 157.25264 * 19 17 10 22 22 C 1.53347 * 109.61149 * 181.32727 * 21 19 17 23 23 C 1.53198 * 109.14668 * 298.71461 * 22 21 19 24 24 N 1.46922 * 108.89666 * 54.57581 * 23 22 21 25 25 C 1.34775 * 120.63186 * 126.33875 * 24 23 22 26 26 N 1.34771 * 120.00089 * 354.99685 * 25 24 23 27 27 O 1.21586 * 120.00059 * 174.99676 * 25 24 23 28 28 C 1.46932 * 118.73657 * 306.32189 * 24 23 22 29 29 H 0.97005 * 119.99822 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47332 * 59.99467 * 9 7 2 31 31 H 1.09011 * 109.46753 * 300.00159 * 9 7 2 32 32 H 1.09003 * 109.47126 * 29.99146 * 11 10 9 33 33 H 1.08997 * 109.47482 * 149.99372 * 11 10 9 34 34 H 1.07996 * 126.58265 * 0.02890 * 13 12 11 35 35 H 1.08001 * 126.57438 * 180.11909 * 14 13 12 36 36 H 1.08002 * 125.78782 * 179.75129 * 15 14 13 37 37 H 1.08998 * 109.46006 * 301.33948 * 21 19 17 38 38 H 1.09001 * 109.45901 * 61.31318 * 21 19 17 39 39 H 1.08997 * 109.68764 * 178.74964 * 22 21 19 40 40 H 1.09007 * 109.47491 * 58.54717 * 22 21 19 41 41 H 1.08997 * 109.58669 * 294.71639 * 23 22 21 42 42 H 1.09007 * 109.58837 * 174.43513 * 23 22 21 43 43 H 0.97000 * 119.99883 * 5.03139 * 26 25 24 44 44 H 0.97001 * 119.99990 * 185.03166 * 26 25 24 45 45 H 1.08998 * 109.58284 * 173.39173 * 28 24 23 46 46 H 1.08996 * 109.58426 * 293.82051 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4643 -2.1295 -0.0005 9 6 3.5114 -1.1943 0.0000 10 7 3.9997 -2.5756 -0.0001 11 6 4.1333 -3.3053 1.2631 12 6 5.5131 -3.0840 1.8274 13 6 5.8721 -2.0913 2.6610 14 6 7.2478 -2.2656 2.9370 15 6 7.6490 -3.3496 2.2489 16 8 6.5941 -3.8412 1.5787 17 6 4.3257 -3.1749 -1.1623 18 8 4.8002 -4.2911 -1.1568 19 6 4.1009 -2.4583 -2.4688 20 1 4.3175 -1.3974 -2.3437 21 6 5.0235 -3.0459 -3.5392 22 6 4.8205 -2.2963 -4.8615 23 6 3.3695 -2.4714 -5.3207 24 7 2.4729 -2.0429 -4.2385 25 6 1.5127 -1.1247 -4.4653 26 7 1.4318 -0.5165 -5.6652 27 8 0.7194 -0.8451 -3.5873 28 6 2.6428 -2.6346 -2.9044 29 1 -0.4850 0.8401 -0.0004 30 1 3.8744 -0.6811 0.8904 31 1 3.8751 -0.6799 -0.8895 32 1 3.3886 -2.9438 1.9722 33 1 3.9797 -4.3697 1.0859 34 1 5.2319 -1.3121 3.0474 35 1 7.8600 -1.6449 3.5744 36 1 8.6498 -3.7555 2.2372 37 1 6.0608 -2.9438 -3.2203 38 1 4.7893 -4.1009 -3.6810 39 1 5.4929 -2.6992 -5.6189 40 1 5.0302 -1.2368 -4.7145 41 1 3.1844 -3.5196 -5.5551 42 1 3.1904 -1.8618 -6.2065 43 1 2.0170 -0.7910 -6.3885 44 1 0.7884 0.1957 -5.8056 45 1 1.9861 -2.1310 -2.1950 46 1 2.3985 -3.6962 -2.9417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162462589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:04 Heat of formation + Delta-G solvation = -33.631377 kcal Electronic energy + Delta-G solvation = -30800.473767 eV Core-core repulsion = 26692.561667 eV Total energy + Delta-G solvation = -4107.912100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.23490 -40.23067 -39.08709 -36.74289 -35.31723 -33.62583 -32.75620 -32.44320 -32.05193 -31.29327 -29.99827 -27.86240 -25.88223 -25.05951 -23.47312 -22.49141 -21.39052 -21.34023 -20.27279 -19.32949 -18.37932 -18.06054 -17.21715 -16.77376 -16.57328 -16.39379 -15.92356 -15.31329 -14.95943 -14.76215 -14.53212 -14.14508 -14.06371 -14.01565 -13.48892 -13.16768 -12.94234 -12.70688 -12.55026 -12.53931 -12.47448 -12.31617 -12.17685 -11.86908 -11.40852 -11.20696 -10.92572 -10.85752 -10.76182 -10.49618 -10.27215 -10.16892 -9.66069 -9.63389 -9.51111 -9.29889 -9.19757 -8.54985 -8.28491 -8.19946 -7.89665 -6.06966 -4.08262 1.97029 2.83913 2.95258 3.23114 3.26750 3.31716 3.35220 3.46242 3.69786 3.87457 4.35293 4.38692 4.82704 4.97369 5.00543 5.03274 5.20551 5.24993 5.29080 5.33717 5.36564 5.49390 5.59766 5.70363 5.80633 5.93474 5.95294 6.04054 6.05090 6.13142 6.20558 6.21785 6.36496 6.39469 6.53466 6.61579 6.74134 6.77269 6.90770 7.10512 7.21536 7.27979 7.46390 7.53039 8.05027 8.23674 8.46855 8.78952 8.96347 9.08792 9.52018 11.05297 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010410 B = 0.005288 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.042921 B = 5293.671906 C = 7174.883273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.094 3.906 3 Si 0.863 3.137 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.208 3.792 10 N -0.584 5.584 11 C 0.196 3.804 12 C -0.013 4.013 13 C -0.206 4.206 14 C -0.217 4.217 15 C -0.052 4.052 16 O -0.165 6.165 17 C 0.526 3.474 18 O -0.557 6.557 19 C -0.116 4.116 20 H 0.096 0.904 21 C -0.101 4.101 22 C -0.134 4.134 23 C 0.111 3.889 24 N -0.626 5.626 25 C 0.696 3.304 26 N -0.876 5.876 27 O -0.550 6.550 28 C 0.131 3.869 29 H 0.265 0.735 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.196 0.804 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.389 0.611 44 H 0.410 0.590 45 H 0.142 0.858 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.507 -2.911 -7.424 14.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.112 4.112 3 Si 0.690 3.310 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.099 0.901 9 C 0.088 3.912 10 N -0.313 5.313 11 C 0.072 3.928 12 C -0.065 4.065 13 C -0.226 4.226 14 C -0.236 4.236 15 C -0.121 4.121 16 O -0.060 6.060 17 C 0.313 3.687 18 O -0.436 6.436 19 C -0.138 4.138 20 H 0.114 0.886 21 C -0.139 4.139 22 C -0.172 4.172 23 C -0.013 4.013 24 N -0.365 5.365 25 C 0.396 3.604 26 N -0.448 5.448 27 O -0.424 6.424 28 C 0.008 3.992 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.135 0.865 33 H 0.110 0.890 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.213 0.787 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.219 0.781 44 H 0.241 0.759 45 H 0.160 0.840 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.062 -3.537 -6.885 13.501 hybrid contribution 0.709 1.580 -0.342 1.766 sum 11.771 -1.957 -7.227 13.950 Atomic orbital electron populations 1.69842 1.06106 1.26929 1.47726 1.24707 0.94493 0.98323 0.93688 0.87076 0.80374 0.84852 0.78706 1.20075 1.21038 1.19159 1.21134 0.88283 0.95057 1.54078 0.90080 1.19926 0.96393 0.77353 0.97559 1.48006 1.62950 1.16092 1.04297 1.19747 0.87181 0.99027 0.86799 1.23272 0.89760 0.93264 1.00205 1.21676 0.96048 1.01384 1.03467 1.21786 0.96059 1.00431 1.05374 1.23959 0.92060 0.97874 0.98189 1.84117 1.16837 1.48437 1.56636 1.20325 0.77030 0.85907 0.85390 1.90624 1.45420 1.19950 1.87635 1.21628 0.97904 1.01607 0.92620 0.88593 1.21411 0.99056 1.00211 0.93196 1.21992 0.96026 1.01373 0.97828 1.21600 0.89970 1.00109 0.89634 1.47197 1.34175 1.43911 1.11188 1.15999 0.81930 0.79469 0.83046 1.43205 1.45181 1.43239 1.13162 1.91192 1.41763 1.65906 1.43496 1.21669 0.95129 0.98510 0.83845 0.92506 0.95035 0.95266 0.86509 0.89048 0.83418 0.83915 0.78722 0.91767 0.90772 0.90698 0.91513 0.91481 0.90914 0.78134 0.75872 0.84028 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.93 13.96 55.43 0.77 -25.16 16 2 C 0.09 2.58 5.47 -17.82 -0.10 2.49 16 3 Si 0.86 20.69 27.47 -169.99 -4.67 16.02 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 7 C -0.55 -14.21 7.82 -34.44 -0.27 -14.47 16 8 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 9 C 0.21 4.60 4.04 -5.20 -0.02 4.58 16 10 N -0.58 -11.84 2.44 -176.44 -0.43 -12.27 16 11 C 0.20 3.59 5.92 -5.20 -0.03 3.56 16 12 C -0.01 -0.23 6.90 -35.62 -0.25 -0.48 16 13 C -0.21 -3.34 10.81 -39.70 -0.43 -3.77 16 14 C -0.22 -3.06 10.91 -39.70 -0.43 -3.49 16 15 C -0.05 -0.73 12.09 29.42 0.36 -0.37 16 16 O -0.17 -2.90 10.65 5.71 0.06 -2.84 16 17 C 0.53 10.54 6.80 -10.99 -0.07 10.47 16 18 O -0.56 -12.01 15.72 5.55 0.09 -11.92 16 19 C -0.12 -2.05 1.99 -91.65 -0.18 -2.24 16 20 H 0.10 1.79 6.04 -51.93 -0.31 1.47 16 21 C -0.10 -1.44 4.65 -26.53 -0.12 -1.57 16 22 C -0.13 -1.48 6.11 -26.45 -0.16 -1.64 16 23 C 0.11 1.24 6.42 -3.71 -0.02 1.22 16 24 N -0.63 -10.18 2.97 -178.50 -0.53 -10.71 16 25 C 0.70 12.72 8.57 -86.92 -0.75 11.98 16 26 N -0.88 -10.97 8.79 27.63 0.24 -10.73 16 27 O -0.55 -13.50 16.61 5.29 0.09 -13.41 16 28 C 0.13 2.50 5.66 -3.71 -0.02 2.48 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 31 H 0.03 0.65 5.17 -51.92 -0.27 0.39 16 32 H 0.12 2.03 8.07 -51.93 -0.42 1.61 16 33 H 0.09 1.66 7.48 -51.93 -0.39 1.28 16 34 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 35 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.60 5.56 -51.93 -0.29 0.31 16 43 H 0.39 3.42 6.29 -40.82 -0.26 3.16 16 44 H 0.41 4.73 8.93 -40.82 -0.36 4.37 16 45 H 0.14 3.36 4.62 -51.93 -0.24 3.12 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 371.97 15.07 5.61 5.61 Total: -1.00 -35.14 371.97 -7.57 -42.70 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -6.29 Total: 13.96 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: -2.50 Total: 8.74 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.06 Total: -58.86 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: 0.24 Total: -28.17 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.14 -7.57 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162462589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.072 kcal (2) G-P(sol) polarization free energy of solvation -35.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds