Wall clock time and date at job start Tue Mar 31 2020 18:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00737 * 2 1 4 4 H 1.48499 * 109.47157 * 270.00443 * 3 2 1 5 5 H 1.48505 * 109.46933 * 30.00033 * 3 2 1 6 6 H 1.48498 * 109.47481 * 149.99864 * 3 2 1 7 7 C 1.37881 * 119.99557 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00107 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00281 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47702 * 179.97438 * 9 7 2 11 11 C 1.46493 * 120.00029 * 275.27437 * 10 9 7 12 12 C 1.50705 * 109.46892 * 269.99655 * 11 10 9 13 13 C 1.34514 * 125.78737 * 89.71429 * 12 11 10 14 14 C 1.41389 * 106.83632 * 179.88579 * 13 12 11 15 15 C 1.34512 * 106.84050 * 0.37670 * 14 13 12 16 16 O 1.34300 * 108.42297 * 359.76776 * 15 14 13 17 17 C 1.34774 * 120.00062 * 95.26744 * 10 9 7 18 18 O 1.21283 * 119.99931 * 175.88033 * 17 10 9 19 19 C 1.50701 * 120.00230 * 355.88057 * 17 10 9 20 20 H 1.08998 * 109.49524 * 37.15790 * 19 17 10 21 21 C 1.53037 * 109.49994 * 157.25264 * 19 17 10 22 22 C 1.53347 * 109.61149 * 181.32727 * 21 19 17 23 23 C 1.53198 * 109.14668 * 298.71461 * 22 21 19 24 24 N 1.46922 * 108.89666 * 54.57581 * 23 22 21 25 25 C 1.34775 * 120.63186 * 126.33875 * 24 23 22 26 26 N 1.34771 * 120.00089 * 354.99685 * 25 24 23 27 27 O 1.21586 * 120.00059 * 174.99676 * 25 24 23 28 28 C 1.46932 * 118.73657 * 306.32189 * 24 23 22 29 29 H 0.97005 * 119.99822 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47332 * 59.99467 * 9 7 2 31 31 H 1.09011 * 109.46753 * 300.00159 * 9 7 2 32 32 H 1.09003 * 109.47126 * 29.99146 * 11 10 9 33 33 H 1.08997 * 109.47482 * 149.99372 * 11 10 9 34 34 H 1.07996 * 126.58265 * 0.02890 * 13 12 11 35 35 H 1.08001 * 126.57438 * 180.11909 * 14 13 12 36 36 H 1.08002 * 125.78782 * 179.75129 * 15 14 13 37 37 H 1.08998 * 109.46006 * 301.33948 * 21 19 17 38 38 H 1.09001 * 109.45901 * 61.31318 * 21 19 17 39 39 H 1.08997 * 109.68764 * 178.74964 * 22 21 19 40 40 H 1.09007 * 109.47491 * 58.54717 * 22 21 19 41 41 H 1.08997 * 109.58669 * 294.71639 * 23 22 21 42 42 H 1.09007 * 109.58837 * 174.43513 * 23 22 21 43 43 H 0.97000 * 119.99883 * 5.03139 * 26 25 24 44 44 H 0.97001 * 119.99990 * 185.03166 * 26 25 24 45 45 H 1.08998 * 109.58284 * 173.39173 * 28 24 23 46 46 H 1.08996 * 109.58426 * 293.82051 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4643 -2.1295 -0.0005 9 6 3.5114 -1.1943 0.0000 10 7 3.9997 -2.5756 -0.0001 11 6 4.1333 -3.3053 1.2631 12 6 5.5131 -3.0840 1.8274 13 6 5.8721 -2.0913 2.6610 14 6 7.2478 -2.2656 2.9370 15 6 7.6490 -3.3496 2.2489 16 8 6.5941 -3.8412 1.5787 17 6 4.3257 -3.1749 -1.1623 18 8 4.8002 -4.2911 -1.1568 19 6 4.1009 -2.4583 -2.4688 20 1 4.3175 -1.3974 -2.3437 21 6 5.0235 -3.0459 -3.5392 22 6 4.8205 -2.2963 -4.8615 23 6 3.3695 -2.4714 -5.3207 24 7 2.4729 -2.0429 -4.2385 25 6 1.5127 -1.1247 -4.4653 26 7 1.4318 -0.5165 -5.6652 27 8 0.7194 -0.8451 -3.5873 28 6 2.6428 -2.6346 -2.9044 29 1 -0.4850 0.8401 -0.0004 30 1 3.8744 -0.6811 0.8904 31 1 3.8751 -0.6799 -0.8895 32 1 3.3886 -2.9438 1.9722 33 1 3.9797 -4.3697 1.0859 34 1 5.2319 -1.3121 3.0474 35 1 7.8600 -1.6449 3.5744 36 1 8.6498 -3.7555 2.2372 37 1 6.0608 -2.9438 -3.2203 38 1 4.7893 -4.1009 -3.6810 39 1 5.4929 -2.6992 -5.6189 40 1 5.0302 -1.2368 -4.7145 41 1 3.1844 -3.5196 -5.5551 42 1 3.1904 -1.8618 -6.2065 43 1 2.0170 -0.7910 -6.3885 44 1 0.7884 0.1957 -5.8056 45 1 1.9861 -2.1310 -2.1950 46 1 2.3985 -3.6962 -2.9417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162462589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:03 Heat of formation + Delta-G solvation = -59.785695 kcal Electronic energy + Delta-G solvation = -30801.607903 eV Core-core repulsion = 26692.561667 eV Total energy + Delta-G solvation = -4109.046236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.45884 -41.65208 -40.60777 -38.10279 -37.01091 -35.02574 -34.55754 -33.86895 -33.29190 -32.60663 -31.35391 -29.68664 -27.24486 -26.35101 -24.89441 -24.26725 -22.61389 -22.56105 -21.52386 -20.61434 -19.89143 -19.38430 -18.98568 -18.24794 -18.00498 -17.78683 -17.43198 -16.68570 -16.44562 -16.21409 -15.90880 -15.71999 -15.43524 -15.25792 -15.00187 -14.68035 -14.36403 -14.15310 -14.07710 -13.92901 -13.70158 -13.63593 -13.52769 -13.40223 -13.10914 -12.63263 -12.54615 -12.35048 -12.10416 -11.95448 -11.90385 -11.61350 -11.52413 -11.18797 -10.87912 -10.76274 -10.64515 -10.60690 -9.69402 -9.53611 -9.39610 -8.20678 -6.24358 0.73438 1.34785 1.36150 1.43725 1.46026 1.66678 1.91936 2.17025 2.28142 2.36316 2.38972 3.15066 3.30134 3.55990 3.79507 3.82694 3.89167 4.01592 4.10622 4.16334 4.16761 4.21926 4.38898 4.54215 4.55698 4.60185 4.69270 4.76072 4.85934 4.93446 4.95099 4.97966 5.03498 5.06704 5.19783 5.23240 5.39569 5.46407 5.52091 5.57796 5.64024 5.93227 6.07742 6.17682 6.26831 6.53952 6.77144 7.05738 7.16800 7.39298 7.76373 8.95267 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010410 B = 0.005288 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.042921 B = 5293.671906 C = 7174.883273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.037 3.963 3 Si 0.924 3.076 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.236 1.236 7 C -0.529 4.529 8 H 0.037 0.963 9 C 0.223 3.777 10 N -0.589 5.589 11 C 0.195 3.805 12 C -0.043 4.043 13 C -0.206 4.206 14 C -0.223 4.223 15 C -0.043 4.043 16 O -0.190 6.190 17 C 0.520 3.480 18 O -0.574 6.574 19 C -0.108 4.108 20 H 0.088 0.912 21 C -0.096 4.096 22 C -0.124 4.124 23 C 0.103 3.897 24 N -0.624 5.624 25 C 0.689 3.311 26 N -0.847 5.847 27 O -0.625 6.625 28 C 0.139 3.861 29 H 0.262 0.738 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.152 0.848 35 H 0.174 0.826 36 H 0.239 0.761 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.115 0.885 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.411 0.589 44 H 0.417 0.583 45 H 0.091 0.909 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.357 -2.130 -9.082 17.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.164 4.164 3 Si 0.748 3.252 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.160 1.160 7 C -0.567 4.567 8 H 0.055 0.945 9 C 0.101 3.899 10 N -0.318 5.318 11 C 0.072 3.928 12 C -0.094 4.094 13 C -0.226 4.226 14 C -0.241 4.241 15 C -0.110 4.110 16 O -0.086 6.086 17 C 0.309 3.691 18 O -0.454 6.454 19 C -0.130 4.130 20 H 0.106 0.894 21 C -0.134 4.134 22 C -0.162 4.162 23 C -0.019 4.019 24 N -0.362 5.362 25 C 0.388 3.612 26 N -0.420 5.420 27 O -0.504 6.504 28 C 0.014 3.986 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.134 0.866 33 H 0.102 0.898 34 H 0.169 0.831 35 H 0.191 0.809 36 H 0.255 0.745 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.133 0.867 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.129 0.871 43 H 0.245 0.755 44 H 0.250 0.750 45 H 0.109 0.891 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.981 -2.776 -8.603 17.497 hybrid contribution -0.458 1.182 0.164 1.278 sum 14.523 -1.594 -8.439 16.872 Atomic orbital electron populations 1.70015 1.08180 1.27544 1.50490 1.25508 0.95110 1.02162 0.93607 0.86093 0.80261 0.80176 0.78670 1.20379 1.21014 1.15958 1.21184 0.90277 0.93144 1.52134 0.94491 1.19634 0.93527 0.78720 0.98002 1.48042 1.62798 1.15578 1.05386 1.19702 0.88652 0.98286 0.86133 1.22953 0.89554 0.94749 1.02103 1.21919 0.97470 1.00671 1.02535 1.22141 0.95150 1.00991 1.05859 1.24880 0.92568 0.97287 0.96301 1.84091 1.17616 1.49143 1.57711 1.20796 0.76452 0.85849 0.86049 1.90600 1.46263 1.20617 1.87931 1.21605 0.97770 1.01021 0.92627 0.89409 1.21422 0.98014 1.00199 0.93766 1.21994 0.96406 1.01120 0.96719 1.22027 0.89076 1.01784 0.89003 1.47184 1.34515 1.43192 1.11270 1.16309 0.81517 0.79692 0.83642 1.42855 1.45167 1.42228 1.11760 1.91155 1.44655 1.68294 1.46269 1.21231 0.94998 0.97552 0.84803 0.92930 0.94018 0.94624 0.86554 0.89844 0.83064 0.80870 0.74510 0.91456 0.91194 0.86652 0.91453 0.89984 0.87136 0.75491 0.75033 0.89058 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.23 13.96 21.45 0.30 -57.93 16 2 C 0.04 2.11 5.47 84.66 0.46 2.58 16 3 Si 0.92 43.22 27.47 68.60 1.88 45.11 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 7 C -0.53 -28.91 7.82 25.60 0.20 -28.70 16 8 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 9 C 0.22 10.00 4.04 85.63 0.35 10.35 16 10 N -0.59 -24.59 2.44 -830.51 -2.03 -26.62 16 11 C 0.20 7.44 5.92 85.64 0.51 7.94 16 12 C -0.04 -1.49 6.90 24.83 0.17 -1.32 16 13 C -0.21 -6.41 10.81 22.19 0.24 -6.17 16 14 C -0.22 -5.61 10.91 22.19 0.24 -5.37 16 15 C -0.04 -1.07 12.09 66.97 0.81 -0.26 16 16 O -0.19 -6.45 10.65 -2.47 -0.03 -6.48 16 17 C 0.52 21.30 6.80 87.66 0.60 21.90 16 18 O -0.57 -25.10 15.72 -3.04 -0.05 -25.15 16 19 C -0.11 -3.85 1.99 -11.46 -0.02 -3.88 16 20 H 0.09 3.25 6.04 -2.39 -0.01 3.24 16 21 C -0.10 -2.56 4.65 30.72 0.14 -2.42 16 22 C -0.12 -2.26 6.11 30.78 0.19 -2.07 16 23 C 0.10 1.96 6.42 86.37 0.55 2.51 16 24 N -0.62 -19.92 2.97 -836.90 -2.49 -22.41 16 25 C 0.69 25.24 8.57 179.06 1.53 26.78 16 26 N -0.85 -19.62 8.79 -184.75 -1.62 -21.24 16 27 O -0.62 -32.25 16.61 -3.99 -0.07 -32.32 16 28 C 0.14 5.49 5.66 86.36 0.49 5.97 16 29 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 30 H 0.04 1.81 7.17 -2.39 -0.02 1.80 16 31 H 0.04 1.59 5.17 -2.38 -0.01 1.57 16 32 H 0.12 4.29 8.07 -2.39 -0.02 4.27 16 33 H 0.08 3.23 7.48 -2.39 -0.02 3.21 16 34 H 0.15 4.49 8.06 -2.91 -0.02 4.46 16 35 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 36 H 0.24 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 1.94 7.93 -2.39 -0.02 1.92 16 39 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.11 1.27 5.56 -2.38 -0.01 1.26 16 43 H 0.41 5.70 6.29 -92.71 -0.58 5.12 16 44 H 0.42 9.00 8.93 -92.71 -0.83 8.18 16 45 H 0.09 4.64 4.62 -2.39 -0.01 4.63 16 46 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -83.85 371.97 1.93 -81.91 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -0.43 Total: 37.28 kcal Atomic # 6 Polarization: 21.39 SS G_CDS: 6.46 Total: 27.85 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -5.84 Total: -128.20 kcal Atomic # 8 Polarization: -63.81 SS G_CDS: -0.14 Total: -63.95 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.88 Total: 45.11 kcal Total: -83.85 1.93 -81.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162462589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.128 kcal (2) G-P(sol) polarization free energy of solvation -83.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds