Wall clock time and date at job start Tue Mar 31 2020 18:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99873 * 2 1 4 4 H 1.48502 * 109.47000 * 269.99712 * 3 2 1 5 5 H 1.48506 * 109.47005 * 29.99197 * 3 2 1 6 6 H 1.48494 * 109.47058 * 149.99584 * 3 2 1 7 7 C 1.37870 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00151 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47481 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47325 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47191 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99906 * 179.97438 * 12 11 10 14 14 O 1.21591 * 120.00039 * 0.02562 * 13 12 11 15 15 N 1.34772 * 119.99684 * 180.02562 * 13 12 11 16 16 C 1.40176 * 119.99835 * 185.64072 * 15 13 12 17 17 C 1.38707 * 120.08943 * 24.76859 * 16 15 13 18 18 C 1.38202 * 119.98441 * 180.02562 * 17 16 15 19 19 C 1.38265 * 120.16221 * 359.97438 * 18 17 16 20 20 C 1.38253 * 120.17699 * 0.02562 * 19 18 17 21 21 C 1.38544 * 120.01451 * 359.97438 * 20 19 18 22 22 O 1.35983 * 120.08087 * 180.02562 * 21 20 19 23 23 C 1.42901 * 116.99815 * 359.97438 * 22 21 20 24 24 C 1.52998 * 109.46805 * 180.02562 * 23 22 21 25 25 C 1.50705 * 109.46953 * 179.97438 * 24 23 22 26 26 N 1.34780 * 119.99858 * 180.02562 * 25 24 23 27 27 O 1.21276 * 119.99873 * 359.97438 * 25 24 23 28 28 H 0.97001 * 120.00191 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.46999 * 59.99862 * 9 7 2 30 30 H 1.09004 * 109.46956 * 300.00181 * 9 7 2 31 31 H 1.09008 * 109.47101 * 59.99634 * 10 9 7 32 32 H 1.09004 * 109.46975 * 299.99926 * 10 9 7 33 33 H 1.09003 * 109.46760 * 60.00000 * 11 10 9 34 34 H 1.08996 * 109.47286 * 300.00277 * 11 10 9 35 35 H 0.96994 * 119.99705 * 0.02562 * 12 11 10 36 36 H 0.96996 * 120.00363 * 5.63703 * 15 13 12 37 37 H 1.08000 * 120.00118 * 359.97438 * 17 16 15 38 38 H 1.08001 * 119.91391 * 180.02562 * 18 17 16 39 39 H 1.08003 * 119.90934 * 179.72661 * 19 18 17 40 40 H 1.08007 * 119.98895 * 179.97438 * 20 19 18 41 41 H 1.09003 * 109.47236 * 299.99831 * 23 22 21 42 42 H 1.09000 * 109.47324 * 60.00339 * 23 22 21 43 43 H 1.08996 * 109.47301 * 299.99937 * 24 23 22 44 44 H 1.09003 * 109.47474 * 59.99707 * 24 23 22 45 45 H 0.97005 * 119.99709 * 0.02562 * 26 25 24 46 46 H 0.96996 * 119.99841 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5465 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5516 -2.6364 0.0009 12 7 6.0400 -4.0176 0.0014 13 6 7.3651 -4.2638 0.0010 14 8 8.1552 -3.3395 0.0006 15 7 7.8144 -5.5344 0.0009 16 6 9.1870 -5.7924 0.1197 17 6 10.0182 -4.8664 0.7325 18 6 11.3713 -5.1227 0.8480 19 6 11.8997 -6.3013 0.3545 20 6 11.0774 -7.2290 -0.2575 21 6 9.7198 -6.9795 -0.3772 22 8 8.9097 -7.8913 -0.9784 23 6 9.5257 -9.0856 -1.4646 24 6 8.4643 -9.9827 -2.1044 25 6 9.1140 -11.2419 -2.6177 26 7 8.3678 -12.1860 -3.2248 27 8 10.3084 -11.4054 -2.4853 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6799 0.8911 30 1 3.8752 -0.6803 -0.8889 31 1 3.6586 -3.1501 -0.8893 32 1 3.6580 -3.1505 0.8908 33 1 5.9149 -2.1225 0.8910 34 1 5.9149 -2.1224 -0.8889 35 1 5.4097 -4.7548 0.0014 36 1 7.1879 -6.2703 -0.0813 37 1 9.6081 -3.9448 1.1184 38 1 12.0174 -4.4011 1.3257 39 1 12.9584 -6.4955 0.4430 40 1 11.4934 -8.1485 -0.6423 41 1 10.2799 -8.8285 -2.2084 42 1 9.9975 -9.6142 -0.6363 43 1 7.7097 -10.2398 -1.3610 44 1 7.9927 -9.4539 -2.9327 45 1 7.4126 -12.0547 -3.3317 46 1 8.7860 -12.9962 -3.5555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171376435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:33 Heat of formation + Delta-G solvation = -89.616497 kcal Electronic energy + Delta-G solvation = -27298.131027 eV Core-core repulsion = 23187.791230 eV Total energy + Delta-G solvation = -4110.339797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.01184 -40.18848 -39.52292 -37.61296 -35.73413 -34.72542 -34.30580 -33.35141 -32.39875 -31.52707 -30.20288 -29.23870 -26.99987 -25.37745 -23.52395 -22.40837 -22.20893 -21.06957 -20.80577 -20.20172 -18.92439 -18.15274 -17.81251 -17.59493 -16.91411 -16.86242 -16.66377 -15.98733 -15.51035 -15.32698 -15.26386 -14.80222 -14.36610 -14.30917 -14.24702 -14.03683 -13.83829 -13.47239 -13.39949 -12.70778 -12.47220 -12.34331 -12.05191 -11.92896 -11.81635 -11.48035 -11.15476 -11.09407 -10.92532 -10.66019 -10.59915 -10.31781 -10.21368 -9.97486 -9.83664 -9.68942 -9.24336 -8.95895 -8.70775 -8.56646 -7.88242 -6.07475 -4.06318 1.17590 1.25271 2.00664 2.39162 2.60896 3.11165 3.27628 3.30896 3.38575 3.42834 3.72185 4.08261 4.17082 4.38728 4.43585 4.48005 4.69551 4.74798 4.87408 5.01572 5.16122 5.19655 5.26714 5.30599 5.37254 5.51614 5.65199 5.70038 5.92578 5.99895 6.10486 6.14097 6.29915 6.34367 6.43429 6.47125 6.61808 6.66252 6.69938 6.77616 6.91236 7.14698 7.21540 7.34885 7.61624 7.74252 7.93444 8.48274 8.52924 8.96148 9.54767 11.05676 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.001934 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.253432 B =14475.721254 C =16423.278951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.132 3.868 12 N -0.735 5.735 13 C 0.700 3.300 14 O -0.577 6.577 15 N -0.679 5.679 16 C 0.150 3.850 17 C -0.099 4.099 18 C -0.132 4.132 19 C -0.107 4.107 20 C -0.186 4.186 21 C 0.093 3.907 22 O -0.321 6.321 23 C 0.077 3.923 24 C -0.144 4.144 25 C 0.524 3.476 26 N -0.853 5.853 27 O -0.543 6.543 28 H 0.263 0.737 29 H 0.019 0.981 30 H 0.015 0.985 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.397 0.603 36 H 0.409 0.591 37 H 0.156 0.844 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.131 0.869 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.405 0.595 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.447 -24.426 -3.037 31.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.009 3.991 12 N -0.389 5.389 13 C 0.401 3.599 14 O -0.454 6.454 15 N -0.326 5.326 16 C 0.054 3.946 17 C -0.119 4.119 18 C -0.150 4.150 19 C -0.126 4.126 20 C -0.205 4.205 21 C 0.046 3.954 22 O -0.235 6.235 23 C 0.002 3.998 24 C -0.184 4.184 25 C 0.309 3.691 26 N -0.417 5.417 27 O -0.420 6.420 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.231 0.769 36 H 0.245 0.755 37 H 0.173 0.827 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.233 0.767 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 21.470 -23.314 -2.887 31.825 hybrid contribution -0.511 -0.293 -0.401 0.713 sum 20.958 -23.607 -3.288 31.739 Atomic orbital electron populations 1.69909 1.06317 1.26967 1.50983 1.25029 0.94759 0.99260 0.94462 0.86775 0.80416 0.83501 0.78602 1.20245 1.21375 1.18855 1.21087 0.89295 0.94499 1.51128 0.91019 1.19504 0.97266 0.91400 0.96741 1.21716 0.90535 1.01096 1.01777 1.21583 0.95836 0.79655 1.02074 1.45358 1.04455 1.10472 1.78590 1.15966 0.83329 0.82541 0.78081 1.90880 1.54505 1.43030 1.57010 1.42479 1.06097 1.07531 1.76515 1.16885 0.83333 0.93444 1.00931 1.21413 0.93130 0.99882 0.97502 1.21017 0.94879 0.97496 1.01656 1.20908 0.99557 0.93774 0.98370 1.21053 0.91851 1.01923 1.05711 1.18515 0.89600 0.90046 0.97270 1.85877 1.36381 1.28632 1.72611 1.22349 0.94881 0.83627 0.98989 1.21477 0.99847 0.93780 1.03275 1.20319 0.86957 0.84778 0.77045 1.43827 1.12857 1.22666 1.62370 1.90790 1.15108 1.79316 1.56806 0.92695 0.96228 0.96685 0.92100 0.92042 0.91687 0.91727 0.76908 0.75546 0.82656 0.85589 0.85842 0.85096 0.91057 0.91060 0.87374 0.87350 0.76676 0.76465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -2.05 5.27 -26.73 -0.14 -2.19 16 11 C 0.13 2.12 5.67 -4.04 -0.02 2.10 16 12 N -0.73 -9.83 5.56 -65.23 -0.36 -10.19 16 13 C 0.70 10.24 8.37 -86.92 -0.73 9.51 16 14 O -0.58 -10.41 13.51 5.29 0.07 -10.34 16 15 N -0.68 -8.02 5.30 -14.10 -0.07 -8.10 16 16 C 0.15 1.88 6.45 -83.48 -0.54 1.34 16 17 C -0.10 -1.27 8.72 -39.42 -0.34 -1.62 16 18 C -0.13 -1.40 10.04 -39.58 -0.40 -1.79 16 19 C -0.11 -1.01 10.04 -39.57 -0.40 -1.41 16 20 C -0.19 -1.82 9.04 -39.46 -0.36 -2.18 16 21 C 0.09 1.01 6.70 -39.08 -0.26 0.75 16 22 O -0.32 -2.95 9.55 -19.69 -0.19 -3.14 16 23 C 0.08 0.56 4.03 37.16 0.15 0.71 16 24 C -0.14 -0.65 6.07 -27.88 -0.17 -0.82 16 25 C 0.52 3.16 8.10 -10.98 -0.09 3.07 16 26 N -0.85 -2.13 8.87 31.22 0.28 -1.86 16 27 O -0.54 -5.68 16.82 5.56 0.09 -5.59 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 30 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 31 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.40 4.16 8.49 -40.82 -0.35 3.81 16 36 H 0.41 3.72 8.36 -40.82 -0.34 3.37 16 37 H 0.16 2.27 5.79 -52.49 -0.30 1.97 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 40 H 0.13 1.06 6.30 -52.48 -0.33 0.73 16 41 H 0.07 0.56 7.62 -51.93 -0.40 0.16 16 42 H 0.07 0.53 7.62 -51.93 -0.40 0.13 16 43 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.40 -0.13 8.83 -40.82 -0.36 -0.49 16 46 H 0.40 0.80 8.93 -40.82 -0.36 0.43 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -36.63 387.43 -8.65 -45.28 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.57 Total: 3.88 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -3.84 Total: -5.95 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.61 Total: -46.90 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.02 Total: -19.07 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.63 -8.65 -45.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171376435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.332 kcal (2) G-P(sol) polarization free energy of solvation -36.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds