Wall clock time and date at job start Tue Mar 31 2020 18:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99873 * 2 1 4 4 H 1.48502 * 109.47000 * 269.99712 * 3 2 1 5 5 H 1.48506 * 109.47005 * 29.99197 * 3 2 1 6 6 H 1.48494 * 109.47058 * 149.99584 * 3 2 1 7 7 C 1.37870 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00151 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47481 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47325 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47191 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99906 * 179.97438 * 12 11 10 14 14 O 1.21591 * 120.00039 * 0.02562 * 13 12 11 15 15 N 1.34772 * 119.99684 * 180.02562 * 13 12 11 16 16 C 1.40176 * 119.99835 * 185.64072 * 15 13 12 17 17 C 1.38707 * 120.08943 * 24.76859 * 16 15 13 18 18 C 1.38202 * 119.98441 * 180.02562 * 17 16 15 19 19 C 1.38265 * 120.16221 * 359.97438 * 18 17 16 20 20 C 1.38253 * 120.17699 * 0.02562 * 19 18 17 21 21 C 1.38544 * 120.01451 * 359.97438 * 20 19 18 22 22 O 1.35983 * 120.08087 * 180.02562 * 21 20 19 23 23 C 1.42901 * 116.99815 * 359.97438 * 22 21 20 24 24 C 1.52998 * 109.46805 * 180.02562 * 23 22 21 25 25 C 1.50705 * 109.46953 * 179.97438 * 24 23 22 26 26 N 1.34780 * 119.99858 * 180.02562 * 25 24 23 27 27 O 1.21276 * 119.99873 * 359.97438 * 25 24 23 28 28 H 0.97001 * 120.00191 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.46999 * 59.99862 * 9 7 2 30 30 H 1.09004 * 109.46956 * 300.00181 * 9 7 2 31 31 H 1.09008 * 109.47101 * 59.99634 * 10 9 7 32 32 H 1.09004 * 109.46975 * 299.99926 * 10 9 7 33 33 H 1.09003 * 109.46760 * 60.00000 * 11 10 9 34 34 H 1.08996 * 109.47286 * 300.00277 * 11 10 9 35 35 H 0.96994 * 119.99705 * 0.02562 * 12 11 10 36 36 H 0.96996 * 120.00363 * 5.63703 * 15 13 12 37 37 H 1.08000 * 120.00118 * 359.97438 * 17 16 15 38 38 H 1.08001 * 119.91391 * 180.02562 * 18 17 16 39 39 H 1.08003 * 119.90934 * 179.72661 * 19 18 17 40 40 H 1.08007 * 119.98895 * 179.97438 * 20 19 18 41 41 H 1.09003 * 109.47236 * 299.99831 * 23 22 21 42 42 H 1.09000 * 109.47324 * 60.00339 * 23 22 21 43 43 H 1.08996 * 109.47301 * 299.99937 * 24 23 22 44 44 H 1.09003 * 109.47474 * 59.99707 * 24 23 22 45 45 H 0.97005 * 119.99709 * 0.02562 * 26 25 24 46 46 H 0.96996 * 119.99841 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5465 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5516 -2.6364 0.0009 12 7 6.0400 -4.0176 0.0014 13 6 7.3651 -4.2638 0.0010 14 8 8.1552 -3.3395 0.0006 15 7 7.8144 -5.5344 0.0009 16 6 9.1870 -5.7924 0.1197 17 6 10.0182 -4.8664 0.7325 18 6 11.3713 -5.1227 0.8480 19 6 11.8997 -6.3013 0.3545 20 6 11.0774 -7.2290 -0.2575 21 6 9.7198 -6.9795 -0.3772 22 8 8.9097 -7.8913 -0.9784 23 6 9.5257 -9.0856 -1.4646 24 6 8.4643 -9.9827 -2.1044 25 6 9.1140 -11.2419 -2.6177 26 7 8.3678 -12.1860 -3.2248 27 8 10.3084 -11.4054 -2.4853 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6799 0.8911 30 1 3.8752 -0.6803 -0.8889 31 1 3.6586 -3.1501 -0.8893 32 1 3.6580 -3.1505 0.8908 33 1 5.9149 -2.1225 0.8910 34 1 5.9149 -2.1224 -0.8889 35 1 5.4097 -4.7548 0.0014 36 1 7.1879 -6.2703 -0.0813 37 1 9.6081 -3.9448 1.1184 38 1 12.0174 -4.4011 1.3257 39 1 12.9584 -6.4955 0.4430 40 1 11.4934 -8.1485 -0.6423 41 1 10.2799 -8.8285 -2.2084 42 1 9.9975 -9.6142 -0.6363 43 1 7.7097 -10.2398 -1.3610 44 1 7.9927 -9.4539 -2.9327 45 1 7.4126 -12.0547 -3.3317 46 1 8.7860 -12.9962 -3.5555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171376435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:32 Heat of formation + Delta-G solvation = -118.411540 kcal Electronic energy + Delta-G solvation = -27299.379674 eV Core-core repulsion = 23187.791230 eV Total energy + Delta-G solvation = -4111.588444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.92575 -40.86219 -40.29362 -38.41079 -37.07363 -35.78523 -35.15796 -34.71518 -33.31450 -32.87120 -31.07349 -30.19094 -28.61383 -25.96807 -24.94970 -23.47516 -23.06123 -22.27342 -21.71426 -21.26493 -19.75176 -19.20485 -18.86818 -18.31888 -18.13791 -17.47476 -17.41628 -16.98438 -16.58651 -16.43489 -16.06854 -15.91938 -15.67226 -15.54943 -15.25822 -14.94102 -14.74272 -14.57769 -14.29510 -14.09989 -13.79807 -13.64626 -13.07829 -12.96770 -12.72369 -12.67955 -12.58676 -12.19266 -11.88609 -11.76710 -11.74515 -11.62210 -11.53857 -11.30899 -11.18239 -11.05035 -10.74532 -10.67711 -10.15007 -9.55351 -8.74401 -8.27839 -6.31434 0.32173 0.43100 1.38397 1.40149 1.51610 1.52627 1.57588 1.85715 2.02386 2.37817 2.83481 2.88050 3.08101 3.16777 3.63858 3.90398 3.95892 4.04316 4.09514 4.16935 4.24013 4.25018 4.45669 4.48413 4.52853 4.56101 4.72518 4.73708 4.86774 4.92107 4.92890 5.05801 5.13082 5.32041 5.39040 5.50691 5.51599 5.58548 5.63683 5.66940 5.83678 5.86672 5.93966 6.29167 6.35577 6.42562 6.76637 6.95633 7.29869 7.33354 7.43785 8.88401 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.001934 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.253432 B =14475.721254 C =16423.278951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.529 4.529 8 H 0.038 0.962 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.146 3.854 12 N -0.724 5.724 13 C 0.699 3.301 14 O -0.613 6.613 15 N -0.665 5.665 16 C 0.125 3.875 17 C -0.119 4.119 18 C -0.138 4.138 19 C -0.101 4.101 20 C -0.188 4.188 21 C 0.092 3.908 22 O -0.320 6.320 23 C 0.073 3.927 24 C -0.136 4.136 25 C 0.522 3.478 26 N -0.835 5.835 27 O -0.595 6.595 28 H 0.266 0.734 29 H 0.022 0.978 30 H 0.020 0.980 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.413 0.587 36 H 0.422 0.578 37 H 0.133 0.867 38 H 0.142 0.858 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.130 0.870 44 H 0.124 0.876 45 H 0.420 0.580 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.939 -25.498 -3.452 33.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.051 4.051 10 C -0.137 4.137 11 C 0.022 3.978 12 N -0.380 5.380 13 C 0.400 3.600 14 O -0.494 6.494 15 N -0.313 5.313 16 C 0.029 3.971 17 C -0.139 4.139 18 C -0.156 4.156 19 C -0.119 4.119 20 C -0.208 4.208 21 C 0.045 3.955 22 O -0.235 6.235 23 C -0.002 4.002 24 C -0.175 4.175 25 C 0.308 3.692 26 N -0.399 5.399 27 O -0.476 6.476 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.249 0.751 36 H 0.260 0.740 37 H 0.151 0.849 38 H 0.160 0.840 39 H 0.170 0.830 40 H 0.165 0.835 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.148 0.852 44 H 0.142 0.858 45 H 0.252 0.748 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 22.915 -24.470 -3.320 33.688 hybrid contribution -0.995 -0.126 -0.298 1.046 sum 21.921 -24.596 -3.618 33.144 Atomic orbital electron populations 1.70055 1.08190 1.28077 1.52777 1.25978 0.95594 1.03418 0.94313 0.85713 0.79563 0.78573 0.79152 1.19309 1.21141 1.17056 1.21464 0.91905 0.93244 1.50089 0.94322 1.19473 0.94045 0.94679 0.96900 1.21479 0.91825 0.98127 1.02305 1.21213 0.94120 0.80978 1.01517 1.45053 1.04523 1.09994 1.78391 1.16047 0.83149 0.82980 0.77861 1.90864 1.55452 1.44421 1.58641 1.42248 1.06394 1.06881 1.75777 1.17040 0.83398 0.94340 1.02271 1.21354 0.94398 0.99481 0.98702 1.21240 0.94196 0.98457 1.01731 1.21255 1.00973 0.92839 0.96882 1.21342 0.91524 1.02607 1.05279 1.18566 0.90177 0.89828 0.96934 1.85872 1.36367 1.28942 1.72295 1.22473 0.95812 0.83141 0.98805 1.21452 0.99236 0.92680 1.04181 1.20567 0.86398 0.85494 0.76783 1.43711 1.13602 1.21933 1.60645 1.90771 1.17266 1.80429 1.59134 0.92561 0.96004 0.96155 0.91583 0.91590 0.92307 0.92384 0.75068 0.74013 0.84940 0.83971 0.82988 0.83453 0.91843 0.91298 0.85247 0.85759 0.74798 0.75967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.99 13.96 21.44 0.30 -58.69 16 2 C 0.00 0.22 5.47 84.65 0.46 0.68 16 3 Si 0.95 44.12 27.47 68.60 1.88 46.01 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 7 C -0.53 -29.66 9.66 25.60 0.25 -29.41 16 8 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 9 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 10 C -0.10 -3.47 5.27 30.59 0.16 -3.31 16 11 C 0.15 4.52 5.67 86.38 0.49 5.01 16 12 N -0.72 -18.45 5.56 -478.54 -2.66 -21.11 16 13 C 0.70 20.03 8.37 179.06 1.50 21.53 16 14 O -0.61 -22.30 13.51 -4.00 -0.05 -22.36 16 15 N -0.67 -15.18 5.30 -316.80 -1.68 -16.86 16 16 C 0.13 3.06 6.45 38.17 0.25 3.31 16 17 C -0.12 -3.07 8.72 22.37 0.20 -2.88 16 18 C -0.14 -2.79 10.04 22.27 0.22 -2.57 16 19 C -0.10 -1.71 10.04 22.28 0.22 -1.48 16 20 C -0.19 -3.37 9.04 22.35 0.20 -3.16 16 21 C 0.09 1.90 6.70 22.59 0.15 2.06 16 22 O -0.32 -5.37 9.55 -93.36 -0.89 -6.26 16 23 C 0.07 0.95 4.03 71.98 0.29 1.24 16 24 C -0.14 -0.93 6.07 29.85 0.18 -0.75 16 25 C 0.52 5.48 8.10 87.66 0.71 6.19 16 26 N -0.83 -2.47 8.87 -173.53 -1.54 -4.01 16 27 O -0.59 -12.14 16.82 -3.02 -0.05 -12.19 16 28 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 30 H 0.02 0.89 7.57 -2.38 -0.02 0.87 16 31 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.07 2.24 8.14 -2.38 -0.02 2.23 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.41 7.88 8.49 -92.71 -0.79 7.09 16 36 H 0.42 7.05 8.36 -92.71 -0.78 6.27 16 37 H 0.13 4.04 5.79 -2.91 -0.02 4.02 16 38 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 40 H 0.15 2.11 6.30 -2.91 -0.02 2.09 16 41 H 0.06 0.93 7.62 -2.39 -0.02 0.91 16 42 H 0.07 0.93 7.62 -2.39 -0.02 0.91 16 43 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.42 -1.39 8.83 -92.70 -0.82 -2.21 16 46 H 0.41 0.92 8.93 -92.71 -0.83 0.09 16 Total: -1.00 -80.92 387.43 -1.50 -82.42 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -2.21 Total: 17.05 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 5.40 Total: -4.00 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -5.58 Total: -100.67 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -1.00 Total: -40.81 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.01 kcal Total: -80.92 -1.50 -82.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171376435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.995 kcal (2) G-P(sol) polarization free energy of solvation -80.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds