Wall clock time and date at job start Tue Mar 31 2020 18:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00021 * 2 1 4 4 H 1.48499 * 109.47468 * 240.00211 * 3 2 1 5 5 H 1.48502 * 109.47152 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46924 * 120.00129 * 3 2 1 7 7 C 1.37878 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46976 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47224 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47516 * 180.02562 * 11 10 9 13 13 C 1.34769 * 120.00337 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00126 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00156 * 180.02562 * 13 12 11 16 16 O 1.42901 * 109.47079 * 180.02562 * 15 13 12 17 17 C 1.42902 * 114.00068 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47233 * 180.02562 * 17 16 15 19 19 O 1.21285 * 119.99771 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00157 * 179.97438 * 18 17 16 21 21 C 1.46503 * 120.00355 * 180.02562 * 20 18 17 22 22 C 1.50695 * 109.47313 * 180.02562 * 21 20 18 23 23 C 1.38678 * 120.41675 * 270.25293 * 22 21 20 24 24 C 1.38627 * 118.41930 * 180.24221 * 23 22 21 25 25 C 1.38232 * 119.16085 * 359.75178 * 24 23 22 26 26 N 1.31857 * 120.76541 * 359.97438 * 25 24 23 27 27 C 1.31889 * 121.72235 * 0.02562 * 26 25 24 28 28 H 0.97001 * 119.99893 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.46737 * 60.00380 * 9 7 2 30 30 H 1.08994 * 109.47335 * 300.00257 * 9 7 2 31 31 H 1.09007 * 109.46927 * 60.00681 * 10 9 7 32 32 H 1.08994 * 109.47449 * 300.00372 * 10 9 7 33 33 H 1.09007 * 109.46540 * 60.00533 * 11 10 9 34 34 H 1.08994 * 109.47284 * 300.00562 * 11 10 9 35 35 H 0.97001 * 119.99976 * 0.02562 * 12 11 10 36 36 H 1.09000 * 109.46677 * 60.00573 * 15 13 12 37 37 H 1.08994 * 109.47235 * 300.00505 * 15 13 12 38 38 H 1.08999 * 109.46793 * 60.00064 * 17 16 15 39 39 H 1.09000 * 109.47054 * 300.00543 * 17 16 15 40 40 H 0.97000 * 119.99935 * 359.97438 * 20 18 17 41 41 H 1.09001 * 109.46632 * 59.99997 * 21 20 18 42 42 H 1.08996 * 109.46728 * 299.99991 * 21 20 18 43 43 H 1.07994 * 120.78944 * 359.96926 * 23 22 21 44 44 H 1.07997 * 120.42083 * 179.72800 * 24 23 22 45 45 H 1.07999 * 119.61954 * 180.02562 * 25 24 23 46 46 H 1.08002 * 119.61237 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4322 -6.1006 -0.0018 13 6 1.9830 -7.3712 -0.0009 14 8 0.7906 -7.5929 0.0000 15 6 2.9623 -8.5167 -0.0009 16 8 2.2478 -9.7543 -0.0004 17 6 3.0877 -10.9104 0.0001 18 6 2.2335 -12.1519 0.0000 19 8 1.0245 -12.0561 -0.0010 20 7 2.8131 -13.3687 -0.0001 21 6 1.9827 -14.5756 -0.0008 22 6 2.8685 -15.7948 -0.0001 23 6 3.2864 -16.3597 -1.1956 24 6 4.0964 -17.4837 -1.1466 25 6 4.4621 -17.9973 0.0835 26 7 4.0502 -17.4305 1.2005 27 6 3.2791 -16.3605 1.1919 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 2.8725 -3.6047 0.8878 32 1 2.8713 -3.6039 -0.8922 33 1 0.8527 -5.0446 -0.8906 34 1 0.8546 -5.0449 0.8894 35 1 3.3859 -5.9234 -0.0021 36 1 3.5894 -8.4585 0.8887 37 1 3.5884 -8.4594 -0.8912 38 1 3.7169 -10.9019 0.8902 39 1 3.7171 -10.9027 -0.8897 40 1 3.7800 -13.4453 -0.0004 41 1 1.3539 -14.5834 -0.8911 42 1 1.3531 -14.5839 0.8889 43 1 2.9845 -15.9367 -2.1423 44 1 4.4370 -17.9524 -2.0580 45 1 5.0932 -18.8724 0.1303 46 1 2.9612 -15.9242 2.1273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171715634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:53 Heat of formation + Delta-G solvation = -90.237239 kcal Electronic energy + Delta-G solvation = -26037.166109 eV Core-core repulsion = 21926.799394 eV Total energy + Delta-G solvation = -4110.366714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96330 -40.08422 -39.48141 -37.54394 -35.70843 -35.34574 -33.32780 -33.10419 -32.21875 -31.38448 -29.78049 -28.04791 -26.50825 -25.73935 -24.23263 -22.97829 -22.64285 -21.18346 -20.77699 -20.09016 -18.19482 -17.66772 -17.40216 -17.15824 -16.83778 -16.70717 -16.39900 -15.98856 -15.58514 -15.44449 -15.14520 -14.82472 -14.51820 -14.41654 -14.25396 -13.93769 -13.78798 -13.68356 -13.41268 -13.18495 -12.43610 -12.34723 -12.27569 -12.20532 -11.84408 -11.65907 -10.88809 -10.73742 -10.63261 -10.61915 -10.26443 -10.16959 -10.10331 -9.87154 -9.84237 -9.69343 -9.62353 -9.36528 -9.13050 -8.80155 -8.37082 -6.01672 -4.05178 0.32615 0.59520 2.21185 2.24981 2.73055 3.00500 3.25076 3.31746 3.36797 3.38429 3.74339 3.94821 4.02496 4.15801 4.28928 4.31871 4.33983 4.44114 4.58961 4.67369 4.75863 4.76844 4.87246 4.94091 4.96475 5.11529 5.17787 5.33965 5.42794 5.57044 5.69961 5.77418 5.80205 6.00392 6.15544 6.44959 6.49354 6.58935 6.82493 6.95918 6.99289 7.30780 7.63127 7.66814 7.75950 7.78420 7.96788 8.35775 8.39562 9.01319 9.59027 11.09580 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.050563 B = 0.001190 C = 0.001178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.635920 B =23533.120470 C =23767.196619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.118 3.882 12 N -0.725 5.725 13 C 0.506 3.494 14 O -0.517 6.517 15 C 0.043 3.957 16 O -0.337 6.337 17 C 0.043 3.957 18 C 0.514 3.486 19 O -0.504 6.504 20 N -0.731 5.731 21 C 0.168 3.832 22 C -0.161 4.161 23 C -0.056 4.056 24 C -0.174 4.174 25 C 0.105 3.895 26 N -0.486 5.486 27 C 0.119 3.881 28 H 0.262 0.738 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.398 0.602 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.401 0.599 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.158 0.842 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.696 -36.995 -1.826 39.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.005 4.005 12 N -0.378 5.378 13 C 0.290 3.710 14 O -0.391 6.391 15 C -0.037 4.037 16 O -0.254 6.254 17 C -0.037 4.037 18 C 0.298 3.702 19 O -0.377 6.377 20 N -0.386 5.386 21 C 0.044 3.956 22 C -0.164 4.164 23 C -0.082 4.082 24 C -0.194 4.194 25 C -0.052 4.052 26 N -0.194 5.194 27 C -0.039 4.039 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.235 0.765 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.175 0.825 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 12.759 -37.313 -1.021 39.448 hybrid contribution 1.542 1.310 -0.887 2.209 sum 14.301 -36.004 -1.907 38.787 Atomic orbital electron populations 1.69957 1.06071 1.26828 1.50366 1.25025 0.94841 0.99276 0.95236 0.86644 0.79566 0.83124 0.78564 1.20251 1.21251 1.20251 1.21164 0.92937 0.90962 1.51200 0.92702 1.19029 0.93860 0.90803 0.97726 1.21891 0.99782 0.93272 1.00873 1.21673 0.91800 0.84780 1.02213 1.46076 1.10882 1.05435 1.75432 1.20088 0.89543 0.83723 0.77662 1.90776 1.16497 1.84382 1.47476 1.22320 0.94273 0.84434 1.02698 1.88162 1.30448 1.11330 1.95432 1.22208 0.92942 0.85700 1.02878 1.20269 0.89053 0.84096 0.76740 1.90816 1.14253 1.86372 1.46225 1.45903 1.10374 1.04830 1.77522 1.20083 0.91541 0.79936 1.04026 1.20907 1.01561 0.99177 0.94724 1.21621 0.94018 0.94249 0.98341 1.22223 0.99736 0.97508 0.99924 1.22915 0.96135 0.98363 0.87755 1.67787 1.10688 1.09421 1.31483 1.22824 0.92229 0.91165 0.97642 0.92841 0.96240 0.96226 0.92692 0.92687 0.91626 0.91626 0.76834 0.90004 0.90035 0.89885 0.89950 0.76467 0.90075 0.89899 0.84435 0.84391 0.82494 0.82443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 11 C 0.12 2.07 5.67 -4.04 -0.02 2.05 16 12 N -0.73 -10.01 5.56 -60.30 -0.33 -10.35 16 13 C 0.51 7.64 7.91 -10.99 -0.09 7.55 16 14 O -0.52 -10.73 16.50 -14.36 -0.24 -10.96 16 15 C 0.04 0.43 6.42 36.01 0.23 0.66 16 16 O -0.34 -4.33 9.41 -64.74 -0.61 -4.94 16 17 C 0.04 0.32 6.42 36.01 0.23 0.55 16 18 C 0.51 4.86 7.91 -10.99 -0.09 4.77 16 19 O -0.50 -7.67 16.50 -14.36 -0.24 -7.91 16 20 N -0.73 -3.94 5.55 -61.47 -0.34 -4.29 16 21 C 0.17 0.91 5.82 -5.19 -0.03 0.88 16 22 C -0.16 -0.72 5.27 -104.48 -0.55 -1.27 16 23 C -0.06 -0.21 9.86 -39.28 -0.39 -0.59 16 24 C -0.17 -0.58 10.11 -39.44 -0.40 -0.98 16 25 C 0.11 0.48 11.18 -17.54 -0.20 0.28 16 26 N -0.49 -3.24 10.36 -13.25 -0.14 -3.38 16 27 C 0.12 0.64 10.86 -17.55 -0.19 0.45 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.40 4.04 8.47 -40.82 -0.35 3.69 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.40 1.04 8.46 -40.82 -0.35 0.69 16 41 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 42 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 43 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 44 H 0.14 0.15 8.06 -52.49 -0.42 -0.27 16 45 H 0.16 0.35 8.06 -52.49 -0.42 -0.07 16 46 H 0.16 0.64 8.06 -52.49 -0.42 0.21 16 LS Contribution 403.08 15.07 6.07 6.07 Total: -1.00 -40.26 403.08 -9.28 -49.54 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -6.99 Total: -3.05 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.18 Total: -1.00 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.08 Total: -44.13 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -1.08 Total: -23.81 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -40.26 -9.28 -49.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171715634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.701 kcal (2) G-P(sol) polarization free energy of solvation -40.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds