Wall clock time and date at job start Tue Mar 31 2020 18:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00021 * 2 1 4 4 H 1.48499 * 109.47468 * 240.00211 * 3 2 1 5 5 H 1.48502 * 109.47152 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46924 * 120.00129 * 3 2 1 7 7 C 1.37878 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46976 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47224 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47516 * 180.02562 * 11 10 9 13 13 C 1.34769 * 120.00337 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00126 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00156 * 180.02562 * 13 12 11 16 16 O 1.42901 * 109.47079 * 180.02562 * 15 13 12 17 17 C 1.42902 * 114.00068 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47233 * 180.02562 * 17 16 15 19 19 O 1.21285 * 119.99771 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00157 * 179.97438 * 18 17 16 21 21 C 1.46503 * 120.00355 * 180.02562 * 20 18 17 22 22 C 1.50695 * 109.47313 * 180.02562 * 21 20 18 23 23 C 1.38678 * 120.41675 * 270.25293 * 22 21 20 24 24 C 1.38627 * 118.41930 * 180.24221 * 23 22 21 25 25 C 1.38232 * 119.16085 * 359.75178 * 24 23 22 26 26 N 1.31857 * 120.76541 * 359.97438 * 25 24 23 27 27 C 1.31889 * 121.72235 * 0.02562 * 26 25 24 28 28 H 0.97001 * 119.99893 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.46737 * 60.00380 * 9 7 2 30 30 H 1.08994 * 109.47335 * 300.00257 * 9 7 2 31 31 H 1.09007 * 109.46927 * 60.00681 * 10 9 7 32 32 H 1.08994 * 109.47449 * 300.00372 * 10 9 7 33 33 H 1.09007 * 109.46540 * 60.00533 * 11 10 9 34 34 H 1.08994 * 109.47284 * 300.00562 * 11 10 9 35 35 H 0.97001 * 119.99976 * 0.02562 * 12 11 10 36 36 H 1.09000 * 109.46677 * 60.00573 * 15 13 12 37 37 H 1.08994 * 109.47235 * 300.00505 * 15 13 12 38 38 H 1.08999 * 109.46793 * 60.00064 * 17 16 15 39 39 H 1.09000 * 109.47054 * 300.00543 * 17 16 15 40 40 H 0.97000 * 119.99935 * 359.97438 * 20 18 17 41 41 H 1.09001 * 109.46632 * 59.99997 * 21 20 18 42 42 H 1.08996 * 109.46728 * 299.99991 * 21 20 18 43 43 H 1.07994 * 120.78944 * 359.96926 * 23 22 21 44 44 H 1.07997 * 120.42083 * 179.72800 * 24 23 22 45 45 H 1.07999 * 119.61954 * 180.02562 * 25 24 23 46 46 H 1.08002 * 119.61237 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4322 -6.1006 -0.0018 13 6 1.9830 -7.3712 -0.0009 14 8 0.7906 -7.5929 0.0000 15 6 2.9623 -8.5167 -0.0009 16 8 2.2478 -9.7543 -0.0004 17 6 3.0877 -10.9104 0.0001 18 6 2.2335 -12.1519 0.0000 19 8 1.0245 -12.0561 -0.0010 20 7 2.8131 -13.3687 -0.0001 21 6 1.9827 -14.5756 -0.0008 22 6 2.8685 -15.7948 -0.0001 23 6 3.2864 -16.3597 -1.1956 24 6 4.0964 -17.4837 -1.1466 25 6 4.4621 -17.9973 0.0835 26 7 4.0502 -17.4305 1.2005 27 6 3.2791 -16.3605 1.1919 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 2.8725 -3.6047 0.8878 32 1 2.8713 -3.6039 -0.8922 33 1 0.8527 -5.0446 -0.8906 34 1 0.8546 -5.0449 0.8894 35 1 3.3859 -5.9234 -0.0021 36 1 3.5894 -8.4585 0.8887 37 1 3.5884 -8.4594 -0.8912 38 1 3.7169 -10.9019 0.8902 39 1 3.7171 -10.9027 -0.8897 40 1 3.7800 -13.4453 -0.0004 41 1 1.3539 -14.5834 -0.8911 42 1 1.3531 -14.5839 0.8889 43 1 2.9845 -15.9367 -2.1423 44 1 4.4370 -17.9524 -2.0580 45 1 5.0932 -18.8724 0.1303 46 1 2.9612 -15.9242 2.1273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171715634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:52 Heat of formation + Delta-G solvation = -121.173160 kcal Electronic energy + Delta-G solvation = -26038.507591 eV Core-core repulsion = 21926.799394 eV Total energy + Delta-G solvation = -4111.708197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.37325 -40.89512 -40.47266 -38.37160 -36.90209 -36.30563 -35.19364 -33.51313 -33.13360 -32.59188 -30.58638 -29.11209 -27.73161 -26.51506 -24.73371 -24.54979 -23.00852 -22.31920 -21.84141 -21.44009 -18.89146 -18.55247 -18.15473 -18.02705 -17.67352 -17.44105 -17.37202 -16.98543 -16.63655 -16.51175 -16.12423 -15.90412 -15.80408 -15.20050 -15.03956 -14.75485 -14.52125 -14.20923 -14.14403 -13.97177 -13.92606 -13.76309 -13.53662 -13.12949 -12.97433 -12.69368 -12.55181 -12.54174 -12.40609 -11.65743 -11.57470 -11.24841 -11.15352 -10.82127 -10.81567 -10.76422 -10.53924 -10.47608 -10.19761 -10.11553 -10.05316 -8.18313 -6.30397 -0.00038 0.29032 1.42745 1.46020 1.53765 1.54187 1.58619 1.59854 2.21031 2.43563 2.84271 3.15574 3.23484 3.42063 3.67108 3.72137 3.85318 3.86347 3.99922 4.06186 4.18098 4.20103 4.23419 4.26827 4.27886 4.40763 4.47628 4.55647 4.59582 4.71860 4.84210 4.94865 4.99863 5.15195 5.18377 5.25355 5.27690 5.42226 5.53213 5.71353 5.71661 5.85010 5.89522 6.22610 6.47899 6.61480 6.87517 6.97993 7.19326 7.28499 7.39624 8.93766 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.050563 B = 0.001190 C = 0.001178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.635920 B =23533.120470 C =23767.196619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.021 3.979 10 C -0.100 4.100 11 C 0.129 3.871 12 N -0.708 5.708 13 C 0.498 3.502 14 O -0.586 6.586 15 C 0.052 3.948 16 O -0.390 6.390 17 C 0.041 3.959 18 C 0.508 3.492 19 O -0.576 6.576 20 N -0.708 5.708 21 C 0.170 3.830 22 C -0.158 4.158 23 C -0.058 4.058 24 C -0.169 4.169 25 C 0.094 3.906 26 N -0.517 5.517 27 C 0.107 3.893 28 H 0.263 0.737 29 H -0.010 1.010 30 H -0.010 1.010 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.421 0.579 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.418 0.582 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.153 0.847 44 H 0.164 0.836 45 H 0.177 0.823 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.041 -37.739 -2.503 42.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.088 0.912 9 C -0.016 4.016 10 C -0.137 4.137 11 C 0.005 3.995 12 N -0.362 5.362 13 C 0.285 3.715 14 O -0.465 6.465 15 C -0.027 4.027 16 O -0.309 6.309 17 C -0.038 4.038 18 C 0.295 3.705 19 O -0.454 6.454 20 N -0.363 5.363 21 C 0.046 3.954 22 C -0.160 4.160 23 C -0.085 4.085 24 C -0.188 4.188 25 C -0.062 4.062 26 N -0.226 5.226 27 C -0.050 4.050 28 H 0.071 0.929 29 H 0.008 0.992 30 H 0.008 0.992 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.259 0.741 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.256 0.744 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.171 0.829 44 H 0.182 0.818 45 H 0.194 0.806 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 17.238 -38.094 -1.697 41.847 hybrid contribution 0.205 1.429 -0.692 1.601 sum 17.443 -36.665 -2.389 40.673 Atomic orbital electron populations 1.70120 1.08077 1.27856 1.51676 1.26043 0.95695 1.03638 0.94722 0.85457 0.78165 0.77811 0.79343 1.18885 1.21329 1.18914 1.21672 0.93849 0.91917 1.50552 0.91238 1.18959 0.94539 0.93208 0.94921 1.21587 0.98348 0.91336 1.02460 1.21223 0.92099 0.85742 1.00443 1.45784 1.11393 1.04384 1.74683 1.21223 0.89715 0.84969 0.75608 1.90751 1.19815 1.85366 1.50572 1.22410 0.92323 0.81333 1.06597 1.88091 1.33499 1.13277 1.96021 1.22514 0.92142 0.82665 1.06453 1.20893 0.88462 0.85699 0.75451 1.90790 1.17260 1.87402 1.49925 1.45743 1.11234 1.03839 1.75505 1.20007 0.91725 0.80436 1.03228 1.20725 1.01570 0.98755 0.94978 1.21873 0.93691 0.94323 0.98575 1.22500 0.98840 0.96998 1.00478 1.23335 0.96232 0.98889 0.87785 1.67781 1.11721 1.10195 1.32856 1.22928 0.92541 0.91329 0.98232 0.92855 0.99179 0.99187 0.90967 0.90934 0.93591 0.93626 0.74137 0.85846 0.85790 0.86132 0.86015 0.74422 0.90752 0.90983 0.82887 0.81810 0.80636 0.82109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.69 13.29 21.45 0.28 -57.40 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 3 Si 0.97 43.52 29.54 68.60 2.03 45.54 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.10 -3.75 5.27 30.59 0.16 -3.59 16 11 C 0.13 4.60 5.67 86.38 0.49 5.09 16 12 N -0.71 -18.38 5.56 -463.07 -2.57 -20.96 16 13 C 0.50 14.54 7.91 87.66 0.69 15.23 16 14 O -0.59 -25.21 16.50 15.99 0.26 -24.95 16 15 C 0.05 0.85 6.42 71.24 0.46 1.31 16 16 O -0.39 -9.37 9.41 -120.76 -1.14 -10.51 16 17 C 0.04 0.48 6.42 71.24 0.46 0.93 16 18 C 0.51 9.23 7.91 87.66 0.69 9.92 16 19 O -0.58 -18.34 16.50 15.99 0.26 -18.08 16 20 N -0.71 -6.73 5.55 -466.79 -2.59 -9.32 16 21 C 0.17 1.83 5.82 85.63 0.50 2.33 16 22 C -0.16 -1.28 5.27 -19.77 -0.10 -1.39 16 23 C -0.06 -0.33 9.86 22.47 0.22 -0.10 16 24 C -0.17 -0.75 10.11 22.36 0.23 -0.52 16 25 C 0.09 0.72 11.18 84.69 0.95 1.67 16 26 N -0.52 -6.58 10.36 -195.83 -2.03 -8.61 16 27 C 0.11 1.11 10.86 84.67 0.92 2.03 16 28 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 29 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 30 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.07 2.49 8.14 -2.39 -0.02 2.48 16 33 H 0.05 1.81 8.14 -2.38 -0.02 1.80 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.42 7.04 8.47 -92.71 -0.79 6.26 16 36 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.42 1.11 8.46 -92.71 -0.78 0.32 16 41 H 0.07 0.93 8.10 -2.39 -0.02 0.91 16 42 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 43 H 0.15 0.35 8.06 -2.91 -0.02 0.32 16 44 H 0.16 -0.17 8.06 -2.91 -0.02 -0.19 16 45 H 0.18 0.48 8.06 -2.91 -0.02 0.45 16 46 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -94.90 403.08 0.45 -94.45 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -0.57 Total: 5.22 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 6.50 Total: 4.61 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -6.91 Total: -96.29 kcal Atomic # 8 Polarization: -52.92 SS G_CDS: -0.61 Total: -53.53 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -94.90 0.45 -94.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171715634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.720 kcal (2) G-P(sol) polarization free energy of solvation -94.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds