Wall clock time and date at job start Tue Mar 31 2020 18:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00307 * 2 1 4 4 H 1.48497 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46980 * 300.00315 * 3 2 1 6 6 H 1.48505 * 109.47228 * 59.99901 * 3 2 1 7 7 C 1.37879 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99881 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47131 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.46928 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99702 * 179.97438 * 12 11 10 14 14 O 1.21594 * 120.00209 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00022 * 180.02562 * 13 12 11 16 16 C 1.46494 * 120.00208 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47316 * 180.02562 * 16 15 13 18 18 C 1.38293 * 119.97363 * 269.98007 * 17 16 15 19 19 C 1.38247 * 120.11281 * 180.02562 * 18 17 16 20 20 C 1.38170 * 120.05292 * 359.67902 * 19 18 17 21 21 C 1.38712 * 119.94573 * 0.61946 * 20 19 18 22 22 O 1.35897 * 120.05594 * 179.67820 * 21 20 19 23 23 C 1.42899 * 116.99793 * 359.72146 * 22 21 20 24 24 C 1.50702 * 109.46876 * 179.97438 * 23 22 21 25 25 N 1.34777 * 119.99928 * 179.72354 * 24 23 22 26 26 O 1.21283 * 120.00262 * 0.02562 * 24 23 22 27 27 C 1.38123 * 119.97376 * 89.99732 * 17 16 15 28 28 H 0.97003 * 119.99474 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47470 * 59.99839 * 9 7 2 30 30 H 1.08999 * 109.47069 * 300.00418 * 9 7 2 31 31 H 1.08998 * 109.47284 * 60.00054 * 10 9 7 32 32 H 1.08997 * 109.47167 * 299.99426 * 10 9 7 33 33 H 1.09001 * 109.46954 * 60.00483 * 11 10 9 34 34 H 1.08992 * 109.47478 * 299.99768 * 11 10 9 35 35 H 0.96993 * 119.99902 * 0.02562 * 12 11 10 36 36 H 0.97006 * 119.99548 * 0.02562 * 15 13 12 37 37 H 1.08998 * 109.47096 * 59.99957 * 16 15 13 38 38 H 1.09004 * 109.47251 * 300.00044 * 16 15 13 39 39 H 1.08001 * 119.94264 * 359.97438 * 18 17 16 40 40 H 1.07998 * 119.97015 * 179.97438 * 19 18 17 41 41 H 1.08001 * 120.02378 * 180.29425 * 20 19 18 42 42 H 1.09004 * 109.47206 * 60.00256 * 23 22 21 43 43 H 1.08994 * 109.47548 * 299.99913 * 23 22 21 44 44 H 0.96999 * 120.00047 * 180.27521 * 25 24 23 45 45 H 0.97000 * 120.00317 * 0.28382 * 25 24 23 46 46 H 1.08003 * 120.02893 * 0.02760 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 0.0001 12 7 2.4320 -6.1007 -0.0005 13 6 1.9827 -7.3713 0.0004 14 8 0.7872 -7.5935 0.0013 15 7 2.8584 -8.3958 0.0004 16 6 2.3700 -9.7769 0.0008 17 6 3.5421 -10.7242 0.0013 18 6 4.0793 -11.1593 -1.1964 19 6 5.1541 -12.0287 -1.1994 20 6 5.6985 -12.4600 -0.0049 21 6 5.1576 -12.0300 1.1979 22 8 5.6872 -12.4579 2.3740 23 6 6.7968 -13.3550 2.2975 24 6 7.2465 -13.7175 3.6894 25 7 8.2823 -14.5619 3.8645 26 8 6.6729 -13.2536 4.6521 27 6 4.0786 -11.1575 1.1980 28 1 -0.4849 0.8401 0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6246 -2.5570 0.8896 31 1 2.8718 -3.6044 0.8894 32 1 2.8717 -3.6045 -0.8905 33 1 0.8531 -5.0451 -0.8897 34 1 0.8537 -5.0446 0.8903 35 1 3.3856 -5.9235 -0.0008 36 1 3.8122 -8.2186 0.0001 37 1 1.7642 -9.9484 -0.8889 38 1 1.7647 -9.9480 0.8910 39 1 3.6579 -10.8199 -2.1311 40 1 5.5716 -12.3674 -2.1361 41 1 6.5412 -13.1355 -0.0077 42 1 7.6171 -12.8737 1.7649 43 1 6.4981 -14.2579 1.7651 44 1 8.5692 -14.7983 4.7604 45 1 8.7410 -14.9331 3.0946 46 1 3.6583 -10.8181 2.1332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174726500.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:26 Heat of formation + Delta-G solvation = -93.066349 kcal Electronic energy + Delta-G solvation = -26520.355081 eV Core-core repulsion = 22409.865687 eV Total energy + Delta-G solvation = -4110.489394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96686 -39.97955 -39.53568 -37.95799 -35.58257 -34.64069 -34.39569 -33.27063 -31.84778 -31.15309 -30.62951 -28.71854 -27.10783 -25.76432 -23.10918 -22.94057 -22.25457 -21.00407 -20.80657 -20.34176 -18.81381 -18.31609 -17.90002 -17.00025 -16.95776 -16.51519 -16.41826 -16.24301 -15.91048 -15.47415 -14.84938 -14.74266 -14.56086 -14.44096 -14.12540 -14.05613 -13.94780 -13.55529 -13.08792 -12.90287 -12.67376 -12.26085 -11.99771 -11.76753 -11.65872 -11.62778 -11.36264 -10.89557 -10.68755 -10.58981 -10.54046 -10.40508 -10.13461 -9.82260 -9.47623 -9.32349 -9.18189 -9.07686 -8.69572 -8.55250 -8.34530 -5.99082 -4.01915 0.73182 0.98086 1.91049 2.07503 2.84417 3.19821 3.31954 3.38799 3.39748 3.41810 3.43188 4.03294 4.21701 4.28039 4.33427 4.39193 4.44776 4.51601 4.58836 4.84236 4.86990 5.04296 5.33535 5.36792 5.50990 5.61133 5.75707 5.78571 5.86449 5.94300 6.04273 6.15263 6.23028 6.24442 6.42931 6.54333 6.57860 6.67089 6.85260 6.86174 7.06587 7.11922 7.54967 7.67595 7.80505 8.00268 8.19362 8.41307 8.79495 9.05059 9.62136 11.12249 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.001514 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.425944 B =18493.073418 C =19479.162211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.741 5.741 13 C 0.701 3.299 14 O -0.593 6.593 15 N -0.748 5.748 16 C 0.180 3.820 17 C -0.064 4.064 18 C -0.134 4.134 19 C -0.081 4.081 20 C -0.205 4.205 21 C 0.124 3.876 22 O -0.289 6.289 23 C 0.040 3.960 24 C 0.518 3.482 25 N -0.851 5.851 26 O -0.515 6.515 27 C -0.126 4.126 28 H 0.260 0.740 29 H 0.019 0.981 30 H 0.020 0.980 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.394 0.606 36 H 0.396 0.604 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.409 0.591 45 H 0.403 0.597 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.401 -34.998 -0.469 40.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.159 4.159 11 C 0.012 3.988 12 N -0.395 5.395 13 C 0.400 3.600 14 O -0.471 6.471 15 N -0.405 5.405 16 C 0.056 3.944 17 C -0.065 4.065 18 C -0.153 4.153 19 C -0.099 4.099 20 C -0.224 4.224 21 C 0.079 3.921 22 O -0.202 6.202 23 C -0.039 4.039 24 C 0.301 3.699 25 N -0.418 5.418 26 O -0.388 6.388 27 C -0.145 4.145 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.227 0.773 36 H 0.229 0.771 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.242 0.758 45 H 0.231 0.769 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 17.518 -34.597 0.246 38.780 hybrid contribution 1.975 0.603 -0.226 2.078 sum 19.494 -33.994 0.020 39.186 Atomic orbital electron populations 1.69983 1.06043 1.26528 1.50690 1.25031 0.94851 0.99281 0.95322 0.86531 0.80035 0.83802 0.77574 1.19790 1.21028 1.21016 1.21250 0.93029 0.90957 1.50739 0.92607 1.19037 0.93880 0.90821 0.97721 1.21891 0.99785 0.93352 1.00826 1.21514 0.91290 0.84117 1.01898 1.45380 1.10471 1.04411 1.79278 1.15998 0.85226 0.80752 0.77990 1.90926 1.14101 1.84117 1.57964 1.45111 1.09088 1.04670 1.81605 1.19980 0.92595 0.78288 1.03492 1.19727 0.96751 0.97538 0.92444 1.21088 0.97367 0.98998 0.97836 1.20944 0.95409 0.96130 0.97448 1.21258 1.03399 1.05490 0.92239 1.18960 0.93899 0.95056 0.84174 1.86172 1.45572 1.60564 1.27885 1.22435 0.90438 0.95139 0.95904 1.20065 0.80258 0.78894 0.90655 1.43655 1.35356 1.49857 1.12932 1.90845 1.54146 1.51794 1.42033 1.20400 0.96132 0.98871 0.99064 0.93009 0.96216 0.96212 0.92764 0.92779 0.91949 0.91931 0.77304 0.77053 0.90413 0.90517 0.85331 0.85400 0.85491 0.88724 0.88740 0.75844 0.76856 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 11 C 0.13 2.47 5.67 -4.04 -0.02 2.44 16 12 N -0.74 -11.08 5.56 -65.22 -0.36 -11.45 16 13 C 0.70 10.97 8.57 -86.92 -0.74 10.23 16 14 O -0.59 -11.86 16.34 5.28 0.09 -11.78 16 15 N -0.75 -8.41 5.55 -66.42 -0.37 -8.78 16 16 C 0.18 1.83 5.80 -5.20 -0.03 1.80 16 17 C -0.06 -0.54 5.25 -104.64 -0.55 -1.08 16 18 C -0.13 -0.95 9.70 -39.56 -0.38 -1.33 16 19 C -0.08 -0.48 10.04 -39.60 -0.40 -0.87 16 20 C -0.20 -1.22 9.04 -39.43 -0.36 -1.57 16 21 C 0.12 1.03 6.69 -39.21 -0.26 0.77 16 22 O -0.29 -2.64 9.67 -39.33 -0.38 -3.02 16 23 C 0.04 0.18 5.22 36.01 0.19 0.37 16 24 C 0.52 3.35 8.18 -10.98 -0.09 3.26 16 25 N -0.85 -1.50 8.87 31.22 0.28 -1.22 16 26 O -0.51 -6.33 17.34 -14.35 -0.25 -6.58 16 27 C -0.13 -1.13 9.64 -39.43 -0.38 -1.51 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.39 4.72 8.49 -40.82 -0.35 4.37 16 36 H 0.40 3.50 8.48 -40.82 -0.35 3.16 16 37 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 38 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 41 H 0.13 0.38 6.30 -52.49 -0.33 0.05 16 42 H 0.09 0.19 7.65 -51.93 -0.40 -0.21 16 43 H 0.09 0.17 7.67 -51.93 -0.40 -0.23 16 44 H 0.41 0.55 8.93 -40.82 -0.36 0.18 16 45 H 0.40 -0.74 8.83 -40.82 -0.36 -1.10 16 46 H 0.14 1.28 8.06 -52.48 -0.42 0.85 16 LS Contribution 397.67 15.07 5.99 5.99 Total: -1.00 -39.26 397.67 -9.74 -49.00 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.73 Total: 0.58 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -3.72 Total: -3.10 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.28 Total: -47.75 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.54 Total: -21.37 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -39.26 -9.74 -49.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174726500.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.071 kcal (2) G-P(sol) polarization free energy of solvation -39.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds