Wall clock time and date at job start Tue Mar 31 2020 18:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00307 * 2 1 4 4 H 1.48497 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46980 * 300.00315 * 3 2 1 6 6 H 1.48505 * 109.47228 * 59.99901 * 3 2 1 7 7 C 1.37879 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99881 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47131 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.46928 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99702 * 179.97438 * 12 11 10 14 14 O 1.21594 * 120.00209 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00022 * 180.02562 * 13 12 11 16 16 C 1.46494 * 120.00208 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47316 * 180.02562 * 16 15 13 18 18 C 1.38293 * 119.97363 * 269.98007 * 17 16 15 19 19 C 1.38247 * 120.11281 * 180.02562 * 18 17 16 20 20 C 1.38170 * 120.05292 * 359.67902 * 19 18 17 21 21 C 1.38712 * 119.94573 * 0.61946 * 20 19 18 22 22 O 1.35897 * 120.05594 * 179.67820 * 21 20 19 23 23 C 1.42899 * 116.99793 * 359.72146 * 22 21 20 24 24 C 1.50702 * 109.46876 * 179.97438 * 23 22 21 25 25 N 1.34777 * 119.99928 * 179.72354 * 24 23 22 26 26 O 1.21283 * 120.00262 * 0.02562 * 24 23 22 27 27 C 1.38123 * 119.97376 * 89.99732 * 17 16 15 28 28 H 0.97003 * 119.99474 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47470 * 59.99839 * 9 7 2 30 30 H 1.08999 * 109.47069 * 300.00418 * 9 7 2 31 31 H 1.08998 * 109.47284 * 60.00054 * 10 9 7 32 32 H 1.08997 * 109.47167 * 299.99426 * 10 9 7 33 33 H 1.09001 * 109.46954 * 60.00483 * 11 10 9 34 34 H 1.08992 * 109.47478 * 299.99768 * 11 10 9 35 35 H 0.96993 * 119.99902 * 0.02562 * 12 11 10 36 36 H 0.97006 * 119.99548 * 0.02562 * 15 13 12 37 37 H 1.08998 * 109.47096 * 59.99957 * 16 15 13 38 38 H 1.09004 * 109.47251 * 300.00044 * 16 15 13 39 39 H 1.08001 * 119.94264 * 359.97438 * 18 17 16 40 40 H 1.07998 * 119.97015 * 179.97438 * 19 18 17 41 41 H 1.08001 * 120.02378 * 180.29425 * 20 19 18 42 42 H 1.09004 * 109.47206 * 60.00256 * 23 22 21 43 43 H 1.08994 * 109.47548 * 299.99913 * 23 22 21 44 44 H 0.96999 * 120.00047 * 180.27521 * 25 24 23 45 45 H 0.97000 * 120.00317 * 0.28382 * 25 24 23 46 46 H 1.08003 * 120.02893 * 0.02760 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 0.0001 12 7 2.4320 -6.1007 -0.0005 13 6 1.9827 -7.3713 0.0004 14 8 0.7872 -7.5935 0.0013 15 7 2.8584 -8.3958 0.0004 16 6 2.3700 -9.7769 0.0008 17 6 3.5421 -10.7242 0.0013 18 6 4.0793 -11.1593 -1.1964 19 6 5.1541 -12.0287 -1.1994 20 6 5.6985 -12.4600 -0.0049 21 6 5.1576 -12.0300 1.1979 22 8 5.6872 -12.4579 2.3740 23 6 6.7968 -13.3550 2.2975 24 6 7.2465 -13.7175 3.6894 25 7 8.2823 -14.5619 3.8645 26 8 6.6729 -13.2536 4.6521 27 6 4.0786 -11.1575 1.1980 28 1 -0.4849 0.8401 0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6246 -2.5570 0.8896 31 1 2.8718 -3.6044 0.8894 32 1 2.8717 -3.6045 -0.8905 33 1 0.8531 -5.0451 -0.8897 34 1 0.8537 -5.0446 0.8903 35 1 3.3856 -5.9235 -0.0008 36 1 3.8122 -8.2186 0.0001 37 1 1.7642 -9.9484 -0.8889 38 1 1.7647 -9.9480 0.8910 39 1 3.6579 -10.8199 -2.1311 40 1 5.5716 -12.3674 -2.1361 41 1 6.5412 -13.1355 -0.0077 42 1 7.6171 -12.8737 1.7649 43 1 6.4981 -14.2579 1.7651 44 1 8.5692 -14.7983 4.7604 45 1 8.7410 -14.9331 3.0946 46 1 3.6583 -10.8181 2.1332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174726500.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:26 Heat of formation + Delta-G solvation = -124.184604 kcal Electronic energy + Delta-G solvation = -26521.704469 eV Core-core repulsion = 22409.865687 eV Total energy + Delta-G solvation = -4111.838783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.50949 -41.01728 -40.23516 -38.57458 -37.05176 -35.74693 -35.17327 -34.80819 -33.15994 -32.13676 -31.40955 -29.12316 -28.68583 -26.91959 -24.78870 -23.54404 -22.84197 -22.29501 -21.86915 -21.48139 -19.61265 -18.87859 -18.64758 -18.49086 -17.52588 -17.37019 -17.19918 -16.99771 -16.87846 -16.58842 -16.47457 -15.73233 -15.50619 -15.43008 -15.30097 -15.04678 -14.79221 -14.27478 -14.18706 -13.85538 -13.72072 -13.58564 -13.40723 -13.28403 -12.76187 -12.53398 -12.52409 -12.32429 -12.09511 -11.90374 -11.66583 -11.65992 -11.32055 -11.14014 -11.13093 -10.76358 -10.54766 -10.41266 -9.93747 -9.77889 -9.22211 -8.18294 -6.29684 0.17455 0.44989 1.42454 1.42733 1.47254 1.55963 1.68864 1.78683 2.13860 2.42988 2.76979 2.83192 3.15548 3.41675 3.63449 3.75312 3.93198 4.04587 4.12747 4.13462 4.18481 4.24788 4.26779 4.34784 4.48187 4.58068 4.66946 4.77525 4.97760 5.00718 5.02650 5.18526 5.27294 5.41081 5.45017 5.48314 5.55771 5.59165 5.71045 5.72855 5.82604 5.85844 6.00029 6.24153 6.28406 6.45953 6.87751 7.09817 7.25340 7.39830 7.56782 8.94064 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.001514 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.425944 B =18493.073418 C =19479.162211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.149 3.851 12 N -0.730 5.730 13 C 0.698 3.302 14 O -0.640 6.640 15 N -0.727 5.727 16 C 0.182 3.818 17 C -0.068 4.068 18 C -0.138 4.138 19 C -0.076 4.076 20 C -0.194 4.194 21 C 0.113 3.887 22 O -0.325 6.325 23 C 0.034 3.966 24 C 0.513 3.487 25 N -0.826 5.826 26 O -0.587 6.587 27 C -0.148 4.148 28 H 0.263 0.737 29 H -0.006 1.006 30 H -0.008 1.008 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.412 0.588 36 H 0.411 0.589 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.138 0.862 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.413 0.587 45 H 0.424 0.576 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.228 -36.464 -2.145 43.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.025 3.975 12 N -0.386 5.386 13 C 0.398 3.602 14 O -0.521 6.521 15 N -0.384 5.384 16 C 0.058 3.942 17 C -0.069 4.069 18 C -0.157 4.157 19 C -0.094 4.094 20 C -0.212 4.212 21 C 0.068 3.932 22 O -0.238 6.238 23 C -0.044 4.044 24 C 0.297 3.703 25 N -0.392 5.392 26 O -0.467 6.467 27 C -0.167 4.167 28 H 0.072 0.928 29 H 0.012 0.988 30 H 0.010 0.990 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.248 0.752 36 H 0.247 0.753 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.156 0.844 40 H 0.177 0.823 41 H 0.181 0.819 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.245 0.755 45 H 0.256 0.744 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 21.473 -36.136 -1.465 42.060 hybrid contribution 0.855 0.911 0.291 1.283 sum 22.328 -35.225 -1.173 41.722 Atomic orbital electron populations 1.70128 1.07945 1.27689 1.51761 1.26027 0.95746 1.03549 0.94794 0.85354 0.79180 0.78614 0.77598 1.18210 1.20528 1.20653 1.21716 0.93767 0.92002 1.50343 0.91516 1.18956 0.94480 0.92953 0.95151 1.21591 0.98445 0.91686 1.02123 1.21086 0.91345 0.84590 1.00498 1.45027 1.10870 1.03522 1.79133 1.16146 0.84991 0.81362 0.77706 1.90897 1.16374 1.84820 1.60055 1.44954 1.09299 1.04235 1.79876 1.19986 0.93572 0.77918 1.02698 1.19459 0.96523 0.97877 0.93013 1.21273 0.97785 0.99190 0.97404 1.21319 0.94431 0.94923 0.98739 1.21639 1.03683 1.04898 0.90994 1.19063 0.93917 0.95245 0.84968 1.86128 1.47174 1.61701 1.28804 1.22783 0.90355 0.96163 0.95071 1.20570 0.80320 0.78566 0.90804 1.43498 1.33661 1.47886 1.14197 1.90816 1.56807 1.54860 1.44203 1.20373 0.97408 1.00341 0.98588 0.92845 0.98796 0.98983 0.91488 0.91217 0.93326 0.93641 0.75188 0.75299 0.90547 0.92012 0.84391 0.82323 0.81856 0.85473 0.85413 0.75453 0.74378 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.97 5.27 30.59 0.16 -3.81 16 11 C 0.15 5.54 5.67 86.38 0.49 6.03 16 12 N -0.73 -21.41 5.56 -478.52 -2.66 -24.07 16 13 C 0.70 21.96 8.57 179.06 1.53 23.50 16 14 O -0.64 -26.39 16.34 -4.01 -0.07 -26.45 16 15 N -0.73 -16.11 5.55 -482.31 -2.68 -18.79 16 16 C 0.18 3.77 5.80 85.63 0.50 4.26 16 17 C -0.07 -1.11 5.25 -19.88 -0.10 -1.21 16 18 C -0.14 -1.65 9.70 22.28 0.22 -1.43 16 19 C -0.08 -0.60 10.04 22.26 0.22 -0.38 16 20 C -0.19 -1.58 9.04 22.37 0.20 -1.38 16 21 C 0.11 1.72 6.69 22.51 0.15 1.88 16 22 O -0.32 -5.71 9.67 -73.35 -0.71 -6.42 16 23 C 0.03 0.22 5.22 71.24 0.37 0.60 16 24 C 0.51 6.13 8.18 87.66 0.72 6.85 16 25 N -0.83 -1.24 8.87 -173.53 -1.54 -2.78 16 26 O -0.59 -15.09 17.34 16.00 0.28 -14.82 16 27 C -0.15 -2.71 9.64 22.37 0.22 -2.49 16 28 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 29 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 30 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 32 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.41 9.11 8.49 -92.71 -0.79 8.32 16 36 H 0.41 6.75 8.48 -92.70 -0.79 5.97 16 37 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16 38 H 0.06 1.46 8.08 -2.39 -0.02 1.44 16 39 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 41 H 0.16 0.06 6.30 -2.91 -0.02 0.04 16 42 H 0.13 -0.02 7.65 -2.38 -0.02 -0.04 16 43 H 0.13 -0.05 7.67 -2.39 -0.02 -0.06 16 44 H 0.41 0.52 8.93 -92.71 -0.83 -0.31 16 45 H 0.42 -2.95 8.83 -92.71 -0.82 -3.77 16 46 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -90.07 397.67 -1.72 -91.79 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -2.17 Total: 9.00 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 5.52 Total: 3.69 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -6.59 Total: -103.09 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.50 Total: -47.69 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -90.07 -1.72 -91.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174726500.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.392 kcal (2) G-P(sol) polarization free energy of solvation -90.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds