Wall clock time and date at job start Tue Mar 31 2020 18:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46843 * 180.02562 * 9 7 2 11 11 O 1.42904 * 109.47050 * 180.02562 * 10 9 7 12 12 C 1.35981 * 116.99730 * 179.97438 * 11 10 9 13 13 C 1.38780 * 120.49954 * 359.97438 * 12 11 10 14 14 C 1.38791 * 118.45132 * 179.97438 * 13 12 11 15 15 C 1.38075 * 119.35567 * 359.97438 * 14 13 12 16 16 N 1.31976 * 120.94967 * 0.02562 * 15 14 13 17 17 C 1.32273 * 121.69025 * 359.71942 * 16 15 14 18 18 N 1.39581 * 119.72818 * 180.26906 * 17 16 15 19 19 C 1.34773 * 120.00188 * 0.26835 * 18 17 16 20 20 O 1.21593 * 119.99684 * 0.02562 * 19 18 17 21 21 N 1.34769 * 120.00430 * 179.97438 * 19 18 17 22 22 C 1.47431 * 125.64808 * 0.03437 * 21 19 18 23 23 C 1.54902 * 104.83609 * 155.83048 * 22 21 19 24 24 C 1.55161 * 101.58517 * 37.00367 * 23 22 21 25 25 C 1.47022 * 125.65185 * 179.71520 * 21 19 18 26 26 H 1.09000 * 109.88673 * 300.51943 * 25 21 19 27 27 C 1.53002 * 109.88168 * 61.68339 * 25 21 19 28 28 O 1.42895 * 109.47102 * 293.54992 * 27 25 21 29 29 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 30 30 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 31 31 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 32 32 H 1.09006 * 109.47053 * 299.99704 * 10 9 7 33 33 H 1.08997 * 109.47419 * 60.00089 * 10 9 7 34 34 H 1.08004 * 120.77670 * 359.95669 * 13 12 11 35 35 H 1.07994 * 120.32501 * 180.02562 * 14 13 12 36 36 H 1.07998 * 119.52618 * 180.02562 * 15 14 13 37 37 H 0.96995 * 119.99888 * 180.26593 * 18 17 16 38 38 H 1.09000 * 110.36165 * 274.66585 * 22 21 19 39 39 H 1.09000 * 110.36515 * 36.87820 * 22 21 19 40 40 H 1.08991 * 111.01015 * 155.08332 * 23 22 21 41 41 H 1.09006 * 111.00242 * 278.89735 * 23 22 21 42 42 H 1.09003 * 110.71187 * 82.86139 * 24 23 22 43 43 H 1.08992 * 110.72422 * 206.13337 * 24 23 22 44 44 H 1.09005 * 109.47021 * 53.54536 * 27 25 21 45 45 H 1.08999 * 109.47019 * 173.54334 * 27 25 21 46 46 H 0.96705 * 113.99997 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 6 2.2451 -3.6621 -0.0172 11 8 1.5305 -4.8996 -0.0243 12 6 2.2711 -6.0401 -0.0297 13 6 3.6576 -5.9795 -0.0289 14 6 4.3714 -7.1698 -0.0341 15 6 3.6875 -8.3692 -0.0393 16 7 2.3680 -8.3982 -0.0399 17 6 1.6486 -7.2882 -0.0301 18 7 0.2550 -7.3666 -0.0255 19 6 -0.3522 -8.5698 -0.0256 20 8 0.3139 -9.5870 -0.0292 21 7 -1.6978 -8.6456 -0.0206 22 6 -2.6230 -7.4977 -0.0155 23 6 -3.9378 -8.0454 -0.6244 24 6 -3.9757 -9.4832 -0.0422 25 6 -2.4862 -9.8865 -0.0260 26 1 -2.2493 -10.4724 -0.9141 27 6 -2.1840 -10.7005 1.2338 28 8 -0.8293 -11.1532 1.1948 29 1 -0.4850 0.8401 0.0040 30 1 0.6240 -2.5614 0.8771 31 1 0.6246 -2.5525 -0.9029 32 1 2.8725 -3.6002 -0.9065 33 1 2.8711 -3.6087 0.8735 34 1 4.1692 -5.0284 -0.0247 35 1 5.4513 -7.1580 -0.0332 36 1 4.2401 -9.2971 -0.0429 37 1 -0.2763 -6.5552 -0.0222 38 1 -2.7925 -7.1517 1.0041 39 1 -2.2270 -6.6886 -0.6291 40 1 -4.7963 -7.4646 -0.2872 41 1 -3.8856 -8.0654 -1.7130 42 1 -4.3891 -9.4799 0.9664 43 1 -4.5457 -10.1474 -0.6917 44 1 -2.3330 -10.0757 2.1145 45 1 -2.8532 -11.5596 1.2804 46 1 -0.5673 -11.6771 1.9643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186443538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:48 Heat of formation + Delta-G solvation = -59.728218 kcal Electronic energy + Delta-G solvation = -29125.245351 eV Core-core repulsion = 25016.201608 eV Total energy + Delta-G solvation = -4109.043744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.86594 -39.92416 -38.02314 -37.43415 -36.18495 -34.50040 -33.44756 -31.98926 -31.31946 -30.49655 -30.23221 -28.77898 -25.43689 -25.31657 -23.93732 -22.83941 -22.35164 -21.43571 -20.74647 -19.47796 -18.57092 -17.77165 -17.22843 -17.04315 -16.70900 -16.13535 -15.92741 -15.66791 -15.10967 -14.68788 -14.64182 -14.55221 -14.35138 -13.91864 -13.83964 -13.58755 -13.33354 -12.86591 -12.73428 -12.38081 -12.33573 -11.96160 -11.88626 -11.83515 -11.58042 -11.39513 -11.04848 -11.03603 -10.96240 -10.66971 -10.53110 -10.05068 -10.00305 -9.91559 -9.74560 -9.40216 -9.08957 -8.87667 -8.56043 -8.50683 -7.50706 -6.16864 -4.21564 1.38881 1.56449 2.47877 3.24592 3.29263 3.30467 3.45163 3.61265 3.78513 4.01489 4.17677 4.27247 4.35070 4.50072 4.72815 4.80812 4.94483 5.04915 5.10676 5.15781 5.17066 5.19949 5.25405 5.32625 5.36777 5.40901 5.51657 5.57311 5.62286 5.78931 5.90669 5.93994 5.94473 6.11000 6.25198 6.31029 6.49690 6.59527 6.75712 7.02865 7.39274 7.54834 7.68887 7.73381 7.85257 7.92934 8.16177 8.38719 8.83409 8.89674 9.43137 10.94552 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012056 B = 0.002921 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.002567 B = 9584.427394 C =11700.987896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.318 6.318 12 C 0.061 3.939 13 C -0.146 4.146 14 C -0.167 4.167 15 C 0.078 3.922 16 N -0.440 5.440 17 C 0.352 3.648 18 N -0.663 5.663 19 C 0.705 3.295 20 O -0.491 6.491 21 N -0.633 5.633 22 C 0.091 3.909 23 C -0.129 4.129 24 C -0.126 4.126 25 C 0.159 3.841 26 H 0.080 0.920 27 C 0.064 3.936 28 O -0.530 6.530 29 H 0.264 0.736 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.144 0.856 35 H 0.132 0.868 36 H 0.155 0.845 37 H 0.416 0.584 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.041 0.959 45 H 0.047 0.953 46 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.403 -19.417 1.366 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.230 6.230 12 C 0.009 3.991 13 C -0.173 4.173 14 C -0.189 4.189 15 C -0.079 4.079 16 N -0.155 5.155 17 C 0.118 3.882 18 N -0.314 5.314 19 C 0.406 3.594 20 O -0.358 6.358 21 N -0.375 5.375 22 C -0.033 4.033 23 C -0.167 4.167 24 C -0.164 4.164 25 C 0.055 3.945 26 H 0.098 0.902 27 C -0.016 4.016 28 O -0.333 6.333 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.172 0.828 37 H 0.253 0.747 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.691 -20.538 0.775 21.326 hybrid contribution 0.774 2.137 0.618 2.356 sum -4.916 -18.400 1.393 19.097 Atomic orbital electron populations 1.69956 1.06097 1.27144 1.49532 1.24976 0.94915 0.99378 0.94807 0.86546 0.79523 0.82548 0.78763 1.21093 1.20073 1.20063 1.20922 0.93042 0.90175 1.52511 0.92394 1.19110 0.94127 0.88931 0.98798 1.23367 0.97207 0.80415 0.99771 1.86091 1.36226 1.12885 1.87829 1.19545 0.91114 0.86956 1.01500 1.21559 0.92145 1.00269 1.03310 1.21856 1.01062 0.92575 1.03362 1.22412 0.88888 0.97763 0.98845 1.67675 1.07608 1.26694 1.13532 1.17520 0.83981 0.86840 0.99898 1.42603 1.03824 1.08996 1.75935 1.15461 0.80555 0.83888 0.79505 1.91110 1.61153 1.32201 1.51316 1.47657 1.03263 1.07153 1.79418 1.22371 0.90022 0.89689 1.01172 1.22739 0.97190 0.95603 1.01195 1.22634 0.93909 0.97414 1.02406 1.21380 0.89779 0.85242 0.98098 0.90235 1.22556 0.85243 0.96524 0.97248 1.87036 1.26244 1.73658 1.46347 0.92619 0.95418 0.95403 0.93021 0.93019 0.83876 0.84960 0.82777 0.74654 0.91294 0.90480 0.89466 0.90290 0.90231 0.89617 0.94088 0.93529 0.79161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.53 -14.22 9.11 -34.44 -0.31 -14.53 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 10 C 0.07 1.34 4.70 37.16 0.17 1.52 16 11 O -0.32 -6.10 9.39 -19.68 -0.18 -6.29 16 12 C 0.06 1.07 6.72 -38.92 -0.26 0.81 16 13 C -0.15 -2.25 9.14 -39.18 -0.36 -2.61 16 14 C -0.17 -2.23 10.10 -39.44 -0.40 -2.63 16 15 C 0.08 1.14 11.17 -17.55 -0.20 0.94 16 16 N -0.44 -7.96 7.87 -12.22 -0.10 -8.05 16 17 C 0.35 6.33 7.45 -154.43 -1.15 5.18 16 18 N -0.66 -11.02 5.35 -15.67 -0.08 -11.11 16 19 C 0.70 11.83 8.20 -86.93 -0.71 11.12 16 20 O -0.49 -9.70 11.86 -18.85 -0.22 -9.93 16 21 N -0.63 -8.16 3.07 -168.70 -0.52 -8.67 16 22 C 0.09 0.89 6.58 -2.53 -0.02 0.88 16 23 C -0.13 -0.92 7.08 -24.58 -0.17 -1.09 16 24 C -0.13 -0.84 6.47 -24.90 -0.16 -1.00 16 25 C 0.16 1.68 3.30 -66.95 -0.22 1.46 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 C 0.06 0.65 6.47 37.16 0.24 0.89 16 28 O -0.53 -7.13 10.32 -59.37 -0.61 -7.74 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 1.00 7.69 -51.93 -0.40 0.60 16 33 H 0.05 1.00 7.70 -51.93 -0.40 0.60 16 34 H 0.14 2.04 6.44 -52.48 -0.34 1.70 16 35 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 36 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.42 6.33 6.52 -40.82 -0.27 6.07 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.78 7.29 -51.93 -0.38 0.40 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.45 7.86 -51.93 -0.41 0.04 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.36 3.40 9.12 45.56 0.42 3.81 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -34.98 377.35 -10.08 -45.05 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.97 Total: 7.11 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -3.79 Total: 3.07 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.04 Total: -52.69 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -1.02 Total: -23.96 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.98 -10.08 -45.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186443538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.676 kcal (2) G-P(sol) polarization free energy of solvation -34.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds