Wall clock time and date at job start Tue Mar 31 2020 18:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46843 * 180.02562 * 9 7 2 11 11 O 1.42904 * 109.47050 * 180.02562 * 10 9 7 12 12 C 1.35981 * 116.99730 * 179.97438 * 11 10 9 13 13 C 1.38780 * 120.49954 * 359.97438 * 12 11 10 14 14 C 1.38791 * 118.45132 * 179.97438 * 13 12 11 15 15 C 1.38075 * 119.35567 * 359.97438 * 14 13 12 16 16 N 1.31976 * 120.94967 * 0.02562 * 15 14 13 17 17 C 1.32273 * 121.69025 * 359.71942 * 16 15 14 18 18 N 1.39581 * 119.72818 * 180.26906 * 17 16 15 19 19 C 1.34773 * 120.00188 * 0.26835 * 18 17 16 20 20 O 1.21593 * 119.99684 * 0.02562 * 19 18 17 21 21 N 1.34769 * 120.00430 * 179.97438 * 19 18 17 22 22 C 1.47431 * 125.64808 * 0.03437 * 21 19 18 23 23 C 1.54902 * 104.83609 * 155.83048 * 22 21 19 24 24 C 1.55161 * 101.58517 * 37.00367 * 23 22 21 25 25 C 1.47022 * 125.65185 * 179.71520 * 21 19 18 26 26 H 1.09000 * 109.88673 * 300.51943 * 25 21 19 27 27 C 1.53002 * 109.88168 * 61.68339 * 25 21 19 28 28 O 1.42895 * 109.47102 * 293.54992 * 27 25 21 29 29 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 30 30 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 31 31 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 32 32 H 1.09006 * 109.47053 * 299.99704 * 10 9 7 33 33 H 1.08997 * 109.47419 * 60.00089 * 10 9 7 34 34 H 1.08004 * 120.77670 * 359.95669 * 13 12 11 35 35 H 1.07994 * 120.32501 * 180.02562 * 14 13 12 36 36 H 1.07998 * 119.52618 * 180.02562 * 15 14 13 37 37 H 0.96995 * 119.99888 * 180.26593 * 18 17 16 38 38 H 1.09000 * 110.36165 * 274.66585 * 22 21 19 39 39 H 1.09000 * 110.36515 * 36.87820 * 22 21 19 40 40 H 1.08991 * 111.01015 * 155.08332 * 23 22 21 41 41 H 1.09006 * 111.00242 * 278.89735 * 23 22 21 42 42 H 1.09003 * 110.71187 * 82.86139 * 24 23 22 43 43 H 1.08992 * 110.72422 * 206.13337 * 24 23 22 44 44 H 1.09005 * 109.47021 * 53.54536 * 27 25 21 45 45 H 1.08999 * 109.47019 * 173.54334 * 27 25 21 46 46 H 0.96705 * 113.99997 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 6 2.2451 -3.6621 -0.0172 11 8 1.5305 -4.8996 -0.0243 12 6 2.2711 -6.0401 -0.0297 13 6 3.6576 -5.9795 -0.0289 14 6 4.3714 -7.1698 -0.0341 15 6 3.6875 -8.3692 -0.0393 16 7 2.3680 -8.3982 -0.0399 17 6 1.6486 -7.2882 -0.0301 18 7 0.2550 -7.3666 -0.0255 19 6 -0.3522 -8.5698 -0.0256 20 8 0.3139 -9.5870 -0.0292 21 7 -1.6978 -8.6456 -0.0206 22 6 -2.6230 -7.4977 -0.0155 23 6 -3.9378 -8.0454 -0.6244 24 6 -3.9757 -9.4832 -0.0422 25 6 -2.4862 -9.8865 -0.0260 26 1 -2.2493 -10.4724 -0.9141 27 6 -2.1840 -10.7005 1.2338 28 8 -0.8293 -11.1532 1.1948 29 1 -0.4850 0.8401 0.0040 30 1 0.6240 -2.5614 0.8771 31 1 0.6246 -2.5525 -0.9029 32 1 2.8725 -3.6002 -0.9065 33 1 2.8711 -3.6087 0.8735 34 1 4.1692 -5.0284 -0.0247 35 1 5.4513 -7.1580 -0.0332 36 1 4.2401 -9.2971 -0.0429 37 1 -0.2763 -6.5552 -0.0222 38 1 -2.7925 -7.1517 1.0041 39 1 -2.2270 -6.6886 -0.6291 40 1 -4.7963 -7.4646 -0.2872 41 1 -3.8856 -8.0654 -1.7130 42 1 -4.3891 -9.4799 0.9664 43 1 -4.5457 -10.1474 -0.6917 44 1 -2.3330 -10.0757 2.1145 45 1 -2.8532 -11.5596 1.2804 46 1 -0.5673 -11.6771 1.9643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186443538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:47 Heat of formation + Delta-G solvation = -83.003191 kcal Electronic energy + Delta-G solvation = -29126.254630 eV Core-core repulsion = 25016.201608 eV Total energy + Delta-G solvation = -4110.053022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.08171 -41.01837 -39.31305 -38.59953 -37.10085 -35.79787 -35.42181 -33.04675 -32.70210 -31.93548 -31.18419 -30.06002 -27.15638 -26.19119 -25.21759 -24.17709 -23.42165 -22.62312 -21.98053 -20.60600 -19.75588 -19.14469 -18.43672 -18.02135 -18.00673 -17.61456 -17.23421 -17.09897 -16.50143 -16.26860 -15.78974 -15.64785 -15.24784 -15.15609 -14.85695 -14.72957 -14.36118 -14.22123 -14.02404 -13.86473 -13.57945 -13.27822 -13.15594 -12.80922 -12.72213 -12.69116 -12.44486 -12.21255 -12.11511 -11.80944 -11.69325 -11.64012 -11.62622 -11.44471 -11.25379 -10.80114 -10.59768 -10.37316 -10.13190 -9.59440 -8.78121 -8.25216 -6.37848 0.18019 0.32465 1.39196 1.42653 1.45438 1.53191 2.12982 2.22512 2.45021 2.73421 2.94703 3.09818 3.29066 3.53173 3.65305 3.80301 3.87841 3.96643 4.11453 4.15845 4.18354 4.29447 4.32988 4.34483 4.45359 4.49458 4.55644 4.60836 4.73645 4.74701 4.90397 4.97672 5.03332 5.10270 5.15277 5.28278 5.31061 5.34285 5.37887 5.50227 5.57724 5.74315 5.90192 6.08463 6.37156 6.72771 6.76464 6.99702 7.17393 7.32005 7.67407 8.87235 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012056 B = 0.002921 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.002567 B = 9584.427394 C =11700.987896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.971 3.029 4 H -0.284 1.284 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.032 3.968 10 C 0.083 3.917 11 O -0.331 6.331 12 C 0.035 3.965 13 C -0.145 4.145 14 C -0.150 4.150 15 C 0.075 3.925 16 N -0.471 5.471 17 C 0.331 3.669 18 N -0.665 5.665 19 C 0.697 3.303 20 O -0.528 6.528 21 N -0.633 5.633 22 C 0.082 3.918 23 C -0.121 4.121 24 C -0.111 4.111 25 C 0.147 3.853 26 H 0.060 0.940 27 C 0.062 3.938 28 O -0.564 6.564 29 H 0.266 0.734 30 H 0.001 0.999 31 H 0.001 0.999 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.158 0.842 35 H 0.176 0.824 36 H 0.184 0.816 37 H 0.417 0.583 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.041 0.959 45 H 0.077 0.923 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.505 -19.488 1.586 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.794 3.206 4 H -0.209 1.209 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.089 0.911 9 C -0.006 4.006 10 C 0.009 3.991 11 O -0.245 6.245 12 C -0.016 4.016 13 C -0.172 4.172 14 C -0.170 4.170 15 C -0.082 4.082 16 N -0.187 5.187 17 C 0.098 3.902 18 N -0.316 5.316 19 C 0.398 3.602 20 O -0.398 6.398 21 N -0.374 5.374 22 C -0.041 4.041 23 C -0.159 4.159 24 C -0.149 4.149 25 C 0.044 3.956 26 H 0.078 0.922 27 C -0.016 4.016 28 O -0.369 6.369 29 H 0.075 0.925 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.175 0.825 35 H 0.193 0.807 36 H 0.201 0.799 37 H 0.255 0.745 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.826 -20.620 1.002 21.201 hybrid contribution 0.530 2.039 0.552 2.178 sum -4.296 -18.581 1.554 19.134 Atomic orbital electron populations 1.70095 1.07881 1.28187 1.50581 1.25959 0.95780 1.03411 0.94263 0.85415 0.78191 0.77601 0.79346 1.20944 1.18954 1.18988 1.21373 0.93863 0.91055 1.52111 0.91130 1.18928 0.94478 0.90973 0.96188 1.22957 0.95652 0.79659 1.00826 1.86024 1.36699 1.13055 1.88717 1.19690 0.92181 0.85995 1.03702 1.21871 0.91223 1.01835 1.02271 1.22254 1.03010 0.91008 1.00770 1.23059 0.88089 0.99733 0.97288 1.67715 1.09335 1.27033 1.14568 1.17728 0.84524 0.87116 1.00811 1.42657 1.03819 1.09152 1.75963 1.15717 0.81738 0.83385 0.79395 1.91062 1.62456 1.33096 1.53193 1.47780 1.02417 1.09131 1.78041 1.22600 0.90896 0.88820 1.01753 1.22753 0.96098 0.96056 1.01009 1.22655 0.91088 0.97183 1.03991 1.21716 0.91921 0.84372 0.97605 0.92206 1.22697 0.84503 0.97563 0.96879 1.87001 1.28237 1.74198 1.47511 0.92503 0.98077 0.98084 0.91865 0.91838 0.82478 0.80656 0.79867 0.74492 0.90652 0.91445 0.87085 0.90446 0.88457 0.87371 0.94081 0.90461 0.77736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.45 13.29 21.45 0.28 -54.17 16 2 C 0.00 0.26 5.46 84.66 0.46 0.72 16 3 Si 0.97 42.15 29.54 68.60 2.03 44.17 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.55 -29.48 9.11 25.60 0.23 -29.25 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.03 1.62 5.34 29.85 0.16 1.78 16 10 C 0.08 3.38 4.70 71.98 0.34 3.72 16 11 O -0.33 -13.09 9.39 -93.34 -0.88 -13.97 16 12 C 0.04 1.26 6.72 22.70 0.15 1.41 16 13 C -0.15 -4.24 9.14 22.53 0.21 -4.03 16 14 C -0.15 -3.56 10.10 22.36 0.23 -3.34 16 15 C 0.08 2.08 11.17 84.63 0.95 3.03 16 16 N -0.47 -17.19 7.87 -192.57 -1.52 -18.71 16 17 C 0.33 12.28 7.45 132.99 0.99 13.27 16 18 N -0.67 -23.39 5.35 -321.76 -1.72 -25.11 16 19 C 0.70 24.57 8.20 179.06 1.47 26.04 16 20 O -0.53 -21.83 11.86 19.07 0.23 -21.61 16 21 N -0.63 -16.86 3.07 -805.89 -2.47 -19.33 16 22 C 0.08 1.63 6.58 86.85 0.57 2.20 16 23 C -0.12 -1.54 7.08 31.99 0.23 -1.32 16 24 C -0.11 -1.25 6.47 31.78 0.21 -1.05 16 25 C 0.15 3.09 3.30 45.34 0.15 3.24 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 C 0.06 1.24 6.47 71.98 0.47 1.71 16 28 O -0.56 -15.64 10.32 -125.90 -1.30 -16.94 16 29 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 30 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.06 2.40 7.69 -2.38 -0.02 2.38 16 33 H 0.06 2.40 7.70 -2.39 -0.02 2.39 16 34 H 0.16 4.08 6.44 -2.91 -0.02 4.06 16 35 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.18 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.42 13.71 6.52 -92.71 -0.60 13.10 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.46 7.29 -2.39 -0.02 1.44 16 40 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.10 0.80 7.86 -2.39 -0.02 0.78 16 43 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.38 7.32 9.12 -74.05 -0.68 6.65 16 Total: -1.00 -78.71 377.35 1.19 -77.52 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -0.27 Total: 30.00 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 6.80 Total: 18.14 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -5.42 Total: -117.32 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -1.95 Total: -52.51 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -78.71 1.19 -77.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186443538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.484 kcal (2) G-P(sol) polarization free energy of solvation -78.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds