Wall clock time and date at job start Tue Mar 31 2020 18:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99829 * 2 1 4 4 H 1.48509 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47120 * 299.99525 * 3 2 1 6 6 H 1.48502 * 109.47352 * 59.99718 * 3 2 1 7 7 C 1.37880 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00153 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99931 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47286 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47552 * 179.97438 * 10 9 7 12 12 C 1.35986 * 117.00382 * 179.97438 * 11 10 9 13 13 C 1.38786 * 120.49550 * 359.97438 * 12 11 10 14 14 C 1.38786 * 118.44925 * 180.02562 * 13 12 11 15 15 C 1.38071 * 119.35330 * 359.97438 * 14 13 12 16 16 N 1.31965 * 120.95218 * 359.73002 * 15 14 13 17 17 C 1.32270 * 121.69403 * 0.56655 * 16 15 14 18 18 N 1.39580 * 119.73203 * 179.71016 * 17 16 15 19 19 C 1.34783 * 119.99678 * 359.72349 * 18 17 16 20 20 O 1.21587 * 120.00055 * 5.13839 * 19 18 17 21 21 N 1.34777 * 119.99853 * 185.13395 * 19 18 17 22 22 C 1.46921 * 120.62881 * 354.99434 * 21 19 18 23 23 C 1.53192 * 108.77520 * 126.37045 * 22 21 19 24 24 C 1.53032 * 109.31576 * 54.63012 * 23 22 21 25 25 C 1.53040 * 109.53910 * 298.63535 * 24 23 22 26 26 H 1.08990 * 109.50074 * 301.41426 * 25 24 23 27 27 O 1.42900 * 109.50055 * 181.31429 * 25 24 23 28 28 C 1.46925 * 120.62917 * 174.96894 * 21 19 18 29 29 H 0.96996 * 119.99842 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47531 * 59.99507 * 9 7 2 31 31 H 1.09000 * 109.47165 * 299.99597 * 9 7 2 32 32 H 1.08999 * 109.47046 * 59.99445 * 10 9 7 33 33 H 1.09000 * 109.46882 * 300.00006 * 10 9 7 34 34 H 1.08001 * 120.77144 * 0.04443 * 13 12 11 35 35 H 1.08004 * 120.31948 * 180.02562 * 14 13 12 36 36 H 1.08004 * 119.51615 * 180.02562 * 15 14 13 37 37 H 0.96992 * 120.00560 * 179.72287 * 18 17 16 38 38 H 1.09003 * 109.58732 * 246.15340 * 22 21 19 39 39 H 1.08999 * 109.58827 * 6.57689 * 22 21 19 40 40 H 1.09006 * 109.49893 * 174.58552 * 23 22 21 41 41 H 1.09003 * 109.49478 * 294.64300 * 23 22 21 42 42 H 1.08999 * 109.46118 * 58.65994 * 24 23 22 43 43 H 1.09001 * 109.46083 * 178.63131 * 24 23 22 44 44 H 0.96693 * 114.00259 * 180.16191 * 27 25 24 45 45 H 1.09000 * 109.58557 * 353.41463 * 28 21 19 46 46 H 1.09000 * 109.58586 * 113.84423 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5308 -4.8996 0.0011 12 6 2.2714 -6.0401 0.0007 13 6 3.6579 -5.9795 -0.0009 14 6 4.3717 -7.1698 -0.0018 15 6 3.6878 -8.3692 -0.0007 16 7 2.3684 -8.3981 0.0066 17 6 1.6490 -7.2882 0.0020 18 7 0.2554 -7.3667 0.0040 19 6 -0.3518 -8.5700 0.0049 20 8 0.3107 -9.5852 0.0984 21 7 -1.6934 -8.6479 -0.0976 22 6 -2.5158 -7.4304 -0.1010 23 6 -3.4160 -7.4469 -1.3405 24 6 -4.2201 -8.7487 -1.3648 25 6 -3.2631 -9.9401 -1.4470 26 1 -2.6491 -9.8524 -2.3433 27 8 -4.0156 -11.1537 -1.5005 28 6 -2.3612 -9.9519 -0.2087 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.8720 -3.6043 0.8905 33 1 2.8719 -3.6043 -0.8895 34 1 4.1694 -5.0283 -0.0010 35 1 5.4517 -7.1578 -0.0026 36 1 4.2406 -9.2970 -0.0010 37 1 -0.2761 -6.5553 0.0047 38 1 -3.1320 -7.4031 0.7977 39 1 -1.8697 -6.5530 -0.1303 40 1 -4.0989 -6.5980 -1.3056 41 1 -2.8006 -7.3820 -2.2379 42 1 -4.8166 -8.8241 -0.4556 43 1 -4.8794 -8.7522 -2.2328 44 1 -3.4719 -11.9517 -1.5514 45 1 -1.6131 -10.7382 -0.3091 46 1 -2.9648 -10.1303 0.6813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186449237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:54 Heat of formation + Delta-G solvation = -66.578243 kcal Electronic energy + Delta-G solvation = -28901.411186 eV Core-core repulsion = 24792.070403 eV Total energy + Delta-G solvation = -4109.340783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10781 -40.06035 -38.36255 -37.73045 -36.03842 -34.89671 -33.49678 -32.70801 -31.59196 -30.75269 -30.09335 -28.91779 -25.84689 -25.37716 -23.62364 -23.30061 -22.76567 -21.38228 -20.77874 -19.70104 -18.88726 -17.97806 -17.59723 -17.18483 -16.27727 -16.09752 -15.95771 -15.72468 -15.48798 -15.04150 -14.93220 -14.65654 -14.52016 -14.06914 -13.91418 -13.85698 -13.36591 -13.07976 -12.90529 -12.84111 -12.42962 -12.30071 -12.02808 -11.94147 -11.46039 -11.35758 -11.07192 -11.03000 -10.81816 -10.76196 -10.69323 -10.50490 -10.32611 -10.06879 -9.80155 -9.42312 -9.22925 -9.08595 -8.79307 -8.54691 -7.64155 -6.20409 -4.25089 1.26233 1.45825 2.29666 3.13047 3.20132 3.27513 3.30394 3.47486 3.52279 3.87894 4.04232 4.32026 4.43680 4.50990 4.61160 4.66223 4.70640 4.91226 4.95768 5.02329 5.16390 5.16772 5.24172 5.31272 5.39624 5.47265 5.50434 5.54893 5.65516 5.77046 5.84514 5.88544 5.96037 6.03700 6.16404 6.23782 6.35707 6.52457 6.56938 6.75988 7.27764 7.33194 7.49985 7.57043 7.65103 7.84537 8.12153 8.20620 8.56282 8.80289 9.40036 10.91065 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010989 B = 0.002896 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.384507 B = 9665.237007 C =12039.052743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.318 6.318 12 C 0.065 3.935 13 C -0.146 4.146 14 C -0.163 4.163 15 C 0.077 3.923 16 N -0.443 5.443 17 C 0.346 3.654 18 N -0.661 5.661 19 C 0.702 3.298 20 O -0.535 6.535 21 N -0.626 5.626 22 C 0.104 3.896 23 C -0.133 4.133 24 C -0.112 4.112 25 C 0.091 3.909 26 H 0.060 0.940 27 O -0.564 6.564 28 C 0.102 3.898 29 H 0.263 0.737 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.419 0.581 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.381 0.619 45 H 0.095 0.905 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.131 -18.006 -1.766 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.230 6.230 12 C 0.013 3.987 13 C -0.172 4.172 14 C -0.184 4.184 15 C -0.080 4.080 16 N -0.157 5.157 17 C 0.112 3.888 18 N -0.313 5.313 19 C 0.403 3.597 20 O -0.406 6.406 21 N -0.367 5.367 22 C -0.019 4.019 23 C -0.172 4.172 24 C -0.150 4.150 25 C 0.031 3.969 26 H 0.078 0.922 27 O -0.369 6.369 28 C -0.022 4.022 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.163 0.837 35 H 0.152 0.848 36 H 0.174 0.826 37 H 0.260 0.740 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.228 0.772 45 H 0.114 0.886 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.025 -19.011 -1.669 19.504 hybrid contribution 1.324 2.028 -0.014 2.422 sum -2.701 -16.983 -1.683 17.278 Atomic orbital electron populations 1.69969 1.06093 1.26972 1.49637 1.24978 0.94918 0.99419 0.94791 0.86434 0.79999 0.83198 0.77784 1.19625 1.20794 1.20799 1.20983 0.93109 0.90110 1.52358 0.92285 1.19125 0.94135 0.88948 0.98833 1.23389 0.97249 0.80286 0.99856 1.86088 1.36293 1.12924 1.87733 1.19531 0.91135 0.86932 1.01109 1.21589 0.92126 1.00363 1.03162 1.21884 1.01183 0.92527 1.02805 1.22411 0.88765 0.97877 0.98929 1.67616 1.07773 1.26829 1.13519 1.17501 0.83890 0.86953 1.00479 1.42698 1.04050 1.08993 1.75549 1.15814 0.81500 0.83856 0.78501 1.91008 1.62579 1.33266 1.53764 1.47208 1.04029 1.07309 1.78111 1.21787 0.94352 0.86803 0.98972 1.21913 0.98911 0.97830 0.98515 1.21474 0.97703 0.92271 1.03525 1.22177 0.92549 0.85372 0.96835 0.92193 1.86516 1.37362 1.15932 1.97042 1.22165 0.96234 0.85324 0.98479 0.92700 0.95385 0.95375 0.92942 0.92936 0.83721 0.84795 0.82648 0.74030 0.90545 0.89773 0.89363 0.90957 0.90864 0.90803 0.77183 0.88628 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -13.91 9.11 -34.44 -0.31 -14.23 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.65 5.34 -27.89 -0.15 0.50 16 10 C 0.07 1.29 4.70 37.16 0.17 1.46 16 11 O -0.32 -5.79 9.39 -19.70 -0.18 -5.97 16 12 C 0.06 1.08 6.72 -38.92 -0.26 0.82 16 13 C -0.15 -2.11 9.14 -39.18 -0.36 -2.47 16 14 C -0.16 -2.02 10.10 -39.44 -0.40 -2.42 16 15 C 0.08 1.05 11.17 -17.56 -0.20 0.86 16 16 N -0.44 -7.53 7.89 -12.22 -0.10 -7.63 16 17 C 0.35 5.83 7.44 -154.44 -1.15 4.68 16 18 N -0.66 -10.08 5.31 -15.67 -0.08 -10.16 16 19 C 0.70 10.72 8.26 -86.91 -0.72 10.00 16 20 O -0.53 -9.82 14.05 5.29 0.07 -9.74 16 21 N -0.63 -7.27 2.97 -178.50 -0.53 -7.80 16 22 C 0.10 0.96 6.43 -3.71 -0.02 0.94 16 23 C -0.13 -1.07 6.08 -26.62 -0.16 -1.23 16 24 C -0.11 -0.92 5.53 -26.69 -0.15 -1.06 16 25 C 0.09 0.80 3.62 -26.61 -0.10 0.70 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 O -0.56 -4.81 13.32 -35.23 -0.47 -5.28 16 28 C 0.10 1.01 6.04 -3.71 -0.02 0.99 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 33 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 34 H 0.15 1.93 6.44 -52.49 -0.34 1.60 16 35 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 36 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.42 5.75 5.50 -40.82 -0.22 5.53 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.80 5.57 -51.93 -0.29 0.51 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.38 1.81 9.08 45.56 0.41 2.22 16 45 H 0.10 1.04 7.03 -51.93 -0.37 0.68 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -33.42 376.68 -9.61 -43.03 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.79 Total: 5.80 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -3.92 Total: 1.09 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.03 Total: -50.05 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.58 Total: -20.99 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.42 -9.61 -43.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186449237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.551 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds