Wall clock time and date at job start Tue Mar 31 2020 18:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99829 * 2 1 4 4 H 1.48509 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47120 * 299.99525 * 3 2 1 6 6 H 1.48502 * 109.47352 * 59.99718 * 3 2 1 7 7 C 1.37880 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00153 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99931 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47286 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47552 * 179.97438 * 10 9 7 12 12 C 1.35986 * 117.00382 * 179.97438 * 11 10 9 13 13 C 1.38786 * 120.49550 * 359.97438 * 12 11 10 14 14 C 1.38786 * 118.44925 * 180.02562 * 13 12 11 15 15 C 1.38071 * 119.35330 * 359.97438 * 14 13 12 16 16 N 1.31965 * 120.95218 * 359.73002 * 15 14 13 17 17 C 1.32270 * 121.69403 * 0.56655 * 16 15 14 18 18 N 1.39580 * 119.73203 * 179.71016 * 17 16 15 19 19 C 1.34783 * 119.99678 * 359.72349 * 18 17 16 20 20 O 1.21587 * 120.00055 * 5.13839 * 19 18 17 21 21 N 1.34777 * 119.99853 * 185.13395 * 19 18 17 22 22 C 1.46921 * 120.62881 * 354.99434 * 21 19 18 23 23 C 1.53192 * 108.77520 * 126.37045 * 22 21 19 24 24 C 1.53032 * 109.31576 * 54.63012 * 23 22 21 25 25 C 1.53040 * 109.53910 * 298.63535 * 24 23 22 26 26 H 1.08990 * 109.50074 * 301.41426 * 25 24 23 27 27 O 1.42900 * 109.50055 * 181.31429 * 25 24 23 28 28 C 1.46925 * 120.62917 * 174.96894 * 21 19 18 29 29 H 0.96996 * 119.99842 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47531 * 59.99507 * 9 7 2 31 31 H 1.09000 * 109.47165 * 299.99597 * 9 7 2 32 32 H 1.08999 * 109.47046 * 59.99445 * 10 9 7 33 33 H 1.09000 * 109.46882 * 300.00006 * 10 9 7 34 34 H 1.08001 * 120.77144 * 0.04443 * 13 12 11 35 35 H 1.08004 * 120.31948 * 180.02562 * 14 13 12 36 36 H 1.08004 * 119.51615 * 180.02562 * 15 14 13 37 37 H 0.96992 * 120.00560 * 179.72287 * 18 17 16 38 38 H 1.09003 * 109.58732 * 246.15340 * 22 21 19 39 39 H 1.08999 * 109.58827 * 6.57689 * 22 21 19 40 40 H 1.09006 * 109.49893 * 174.58552 * 23 22 21 41 41 H 1.09003 * 109.49478 * 294.64300 * 23 22 21 42 42 H 1.08999 * 109.46118 * 58.65994 * 24 23 22 43 43 H 1.09001 * 109.46083 * 178.63131 * 24 23 22 44 44 H 0.96693 * 114.00259 * 180.16191 * 27 25 24 45 45 H 1.09000 * 109.58557 * 353.41463 * 28 21 19 46 46 H 1.09000 * 109.58586 * 113.84423 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5308 -4.8996 0.0011 12 6 2.2714 -6.0401 0.0007 13 6 3.6579 -5.9795 -0.0009 14 6 4.3717 -7.1698 -0.0018 15 6 3.6878 -8.3692 -0.0007 16 7 2.3684 -8.3981 0.0066 17 6 1.6490 -7.2882 0.0020 18 7 0.2554 -7.3667 0.0040 19 6 -0.3518 -8.5700 0.0049 20 8 0.3107 -9.5852 0.0984 21 7 -1.6934 -8.6479 -0.0976 22 6 -2.5158 -7.4304 -0.1010 23 6 -3.4160 -7.4469 -1.3405 24 6 -4.2201 -8.7487 -1.3648 25 6 -3.2631 -9.9401 -1.4470 26 1 -2.6491 -9.8524 -2.3433 27 8 -4.0156 -11.1537 -1.5005 28 6 -2.3612 -9.9519 -0.2087 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.8720 -3.6043 0.8905 33 1 2.8719 -3.6043 -0.8895 34 1 4.1694 -5.0283 -0.0010 35 1 5.4517 -7.1578 -0.0026 36 1 4.2406 -9.2970 -0.0010 37 1 -0.2761 -6.5553 0.0047 38 1 -3.1320 -7.4031 0.7977 39 1 -1.8697 -6.5530 -0.1303 40 1 -4.0989 -6.5980 -1.3056 41 1 -2.8006 -7.3820 -2.2379 42 1 -4.8166 -8.8241 -0.4556 43 1 -4.8794 -8.7522 -2.2328 44 1 -3.4719 -11.9517 -1.5514 45 1 -1.6131 -10.7382 -0.3091 46 1 -2.9648 -10.1303 0.6813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186449237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:53 Heat of formation + Delta-G solvation = -89.309095 kcal Electronic energy + Delta-G solvation = -28902.396870 eV Core-core repulsion = 24792.070403 eV Total energy + Delta-G solvation = -4110.326467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23660 -41.13600 -39.41066 -38.90921 -36.86200 -36.06741 -35.44204 -33.56483 -32.85712 -32.24549 -31.12480 -30.08077 -27.16838 -26.70497 -24.85536 -24.24422 -23.85724 -22.78598 -21.93920 -20.71034 -19.97060 -19.22297 -18.68523 -18.10588 -18.00240 -17.37178 -17.21391 -16.72772 -16.64788 -16.47767 -15.97744 -15.75193 -15.52277 -15.22222 -15.10527 -14.89670 -14.35708 -14.23922 -14.11589 -14.03743 -13.63813 -13.59527 -13.28620 -13.00057 -12.78127 -12.77406 -12.43300 -12.20036 -12.08179 -11.91092 -11.71557 -11.65760 -11.60773 -11.44412 -11.36839 -11.22568 -10.60569 -10.41723 -10.26135 -9.74317 -8.82812 -8.25058 -6.37022 0.13810 0.30225 1.27134 1.42647 1.43452 1.55844 1.98725 2.11565 2.44883 2.50678 2.90121 3.10481 3.22349 3.51236 3.72186 3.77597 3.84881 3.86928 3.92977 4.00701 4.13229 4.18750 4.30679 4.34726 4.40657 4.48179 4.56457 4.64024 4.75113 4.75817 4.82722 4.94277 5.00281 5.08717 5.13248 5.25184 5.28678 5.32077 5.35686 5.51773 5.53546 5.66257 5.76385 6.09196 6.34560 6.52229 6.76425 6.77859 7.07227 7.32922 7.42634 8.87671 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010989 B = 0.002896 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.384507 B = 9665.237007 C =12039.052743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.969 3.031 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.070 0.930 9 C 0.031 3.969 10 C 0.083 3.917 11 O -0.330 6.330 12 C 0.040 3.960 13 C -0.146 4.146 14 C -0.146 4.146 15 C 0.075 3.925 16 N -0.473 5.473 17 C 0.326 3.674 18 N -0.661 5.661 19 C 0.697 3.303 20 O -0.572 6.572 21 N -0.620 5.620 22 C 0.099 3.901 23 C -0.127 4.127 24 C -0.110 4.110 25 C 0.099 3.901 26 H 0.052 0.948 27 O -0.572 6.572 28 C 0.103 3.897 29 H 0.266 0.734 30 H 0.002 0.998 31 H 0.002 0.998 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.158 0.842 35 H 0.176 0.824 36 H 0.186 0.814 37 H 0.422 0.578 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.396 0.604 45 H 0.083 0.917 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.649 -17.968 -1.817 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.088 0.912 9 C -0.007 4.007 10 C 0.009 3.991 11 O -0.244 6.244 12 C -0.011 4.011 13 C -0.172 4.172 14 C -0.167 4.167 15 C -0.082 4.082 16 N -0.189 5.189 17 C 0.093 3.907 18 N -0.314 5.314 19 C 0.398 3.602 20 O -0.446 6.446 21 N -0.360 5.360 22 C -0.023 4.023 23 C -0.165 4.165 24 C -0.148 4.148 25 C 0.039 3.961 26 H 0.070 0.930 27 O -0.379 6.379 28 C -0.020 4.020 29 H 0.075 0.925 30 H 0.021 0.979 31 H 0.020 0.980 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.176 0.824 35 H 0.194 0.806 36 H 0.203 0.797 37 H 0.263 0.737 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.246 0.754 45 H 0.101 0.899 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.566 -18.986 -1.726 19.236 hybrid contribution 0.887 1.877 0.006 2.076 sum -1.679 -17.109 -1.720 17.277 Atomic orbital electron populations 1.70097 1.07820 1.28018 1.50774 1.25931 0.95762 1.03336 0.94373 0.85339 0.79189 0.78455 0.77713 1.18214 1.20479 1.20519 1.21421 0.93850 0.91053 1.51756 0.91173 1.18940 0.94503 0.90917 0.96312 1.22961 0.95652 0.79588 1.00895 1.86017 1.36677 1.13033 1.88626 1.19669 0.92154 0.85994 1.03280 1.21894 0.91272 1.01884 1.02186 1.22278 1.03088 0.91015 1.00313 1.23061 0.87993 0.99819 0.97306 1.67662 1.09465 1.27152 1.14583 1.17697 0.84480 0.87164 1.01312 1.42723 1.03964 1.09194 1.75483 1.16000 0.82453 0.83345 0.78357 1.90962 1.63758 1.34249 1.55672 1.47293 1.03048 1.08730 1.76891 1.21988 0.94282 0.85601 1.00469 1.21878 0.98748 0.98612 0.97289 1.21474 0.97525 0.91741 1.04013 1.22048 0.92379 0.86019 0.95690 0.93039 1.86486 1.37957 1.16524 1.96924 1.22253 0.95985 0.84214 0.99591 0.92544 0.97919 0.97979 0.91835 0.91769 0.82431 0.80617 0.79699 0.73657 0.88900 0.90344 0.87673 0.91884 0.90289 0.90338 0.75401 0.89865 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.52 13.29 21.45 0.28 -53.23 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.97 41.58 29.54 68.60 2.03 43.60 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.54 -28.63 9.11 25.60 0.23 -28.40 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.03 1.52 5.34 29.85 0.16 1.67 16 10 C 0.08 3.22 4.70 71.98 0.34 3.56 16 11 O -0.33 -12.21 9.39 -93.39 -0.88 -13.08 16 12 C 0.04 1.32 6.72 22.70 0.15 1.48 16 13 C -0.15 -3.94 9.14 22.53 0.21 -3.73 16 14 C -0.15 -3.18 10.10 22.36 0.23 -2.95 16 15 C 0.07 1.90 11.17 84.63 0.95 2.85 16 16 N -0.47 -16.00 7.89 -192.59 -1.52 -17.52 16 17 C 0.33 11.15 7.44 132.99 0.99 12.14 16 18 N -0.66 -20.93 5.31 -321.76 -1.71 -22.63 16 19 C 0.70 22.00 8.26 179.05 1.48 23.48 16 20 O -0.57 -21.67 14.05 -3.99 -0.06 -21.73 16 21 N -0.62 -14.64 2.97 -836.90 -2.49 -17.13 16 22 C 0.10 1.82 6.43 86.36 0.56 2.38 16 23 C -0.13 -1.96 6.08 30.67 0.19 -1.78 16 24 C -0.11 -1.68 5.53 30.62 0.17 -1.51 16 25 C 0.10 1.70 3.62 30.67 0.11 1.81 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 27 O -0.57 -9.20 13.32 -148.98 -1.98 -11.19 16 28 C 0.10 2.04 6.04 86.36 0.52 2.57 16 29 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.06 2.29 7.70 -2.39 -0.02 2.27 16 33 H 0.06 2.31 7.70 -2.39 -0.02 2.29 16 34 H 0.16 3.79 6.44 -2.91 -0.02 3.77 16 35 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.19 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.42 12.22 5.50 -92.71 -0.51 11.71 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.55 5.57 -2.39 -0.01 1.53 16 40 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.40 3.45 9.08 -74.06 -0.67 2.78 16 45 H 0.08 1.87 7.03 -2.39 -0.02 1.86 16 46 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -73.17 376.68 0.25 -72.92 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -0.16 Total: 25.71 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 6.74 Total: 14.28 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -5.43 Total: -110.51 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -2.92 Total: -46.00 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -73.17 0.25 -72.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186449237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.392 kcal (2) G-P(sol) polarization free energy of solvation -73.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds