Wall clock time and date at job start Tue Mar 31 2020 18:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48504 * 109.46836 * 269.99830 * 3 2 1 5 5 H 1.48498 * 109.47254 * 29.99280 * 3 2 1 6 6 H 1.48494 * 109.47399 * 150.00075 * 3 2 1 7 7 C 1.37876 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00173 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.47069 * 180.02562 * 9 7 2 11 11 C 1.46494 * 119.99709 * 262.78955 * 10 9 7 12 12 C 1.52999 * 109.47222 * 269.99757 * 11 10 9 13 13 N 1.46897 * 109.47218 * 180.02562 * 12 11 10 14 14 C 1.47013 * 111.00200 * 293.63518 * 13 12 11 15 15 C 1.53101 * 109.25981 * 177.60895 * 14 13 12 16 16 O 1.43010 * 109.26066 * 56.84955 * 15 14 13 17 17 C 1.43024 * 113.73686 * 301.33169 * 16 15 14 18 18 C 1.47017 * 111.00297 * 170.00037 * 13 12 11 19 19 C 1.34771 * 119.99716 * 82.79303 * 10 9 7 20 20 O 1.21561 * 119.99907 * 183.53864 * 19 10 9 21 21 C 1.47831 * 120.00740 * 3.53048 * 19 10 9 22 22 N 1.32864 * 119.77691 * 353.84226 * 21 19 10 23 23 C 1.31379 * 121.69158 * 179.74532 * 22 21 19 24 24 C 1.38763 * 121.06688 * 0.53870 * 23 22 21 25 25 C 1.38303 * 119.44463 * 359.47240 * 24 23 22 26 26 C 1.39345 * 118.44002 * 0.25147 * 25 24 23 27 27 O 1.35643 * 120.53761 * 179.97438 * 26 25 24 28 28 H 0.97004 * 119.99991 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47380 * 59.99702 * 9 7 2 30 30 H 1.09004 * 109.47034 * 299.99515 * 9 7 2 31 31 H 1.08994 * 109.47678 * 30.00141 * 11 10 9 32 32 H 1.08998 * 109.47217 * 150.00269 * 11 10 9 33 33 H 1.09005 * 109.47518 * 300.00579 * 12 11 10 34 34 H 1.09003 * 109.47067 * 60.00137 * 12 11 10 35 35 H 1.08999 * 109.50660 * 297.54529 * 14 13 12 36 36 H 1.08998 * 109.50552 * 57.67146 * 14 13 12 37 37 H 1.09002 * 109.50521 * 296.91189 * 15 14 13 38 38 H 1.08997 * 109.54417 * 176.80894 * 15 14 13 39 39 H 1.08997 * 109.50421 * 298.73314 * 17 16 15 40 40 H 1.09004 * 109.53838 * 178.62498 * 17 16 15 41 41 H 1.09002 * 109.50751 * 302.32982 * 18 13 12 42 42 H 1.09004 * 109.50454 * 62.41335 * 18 13 12 43 43 H 1.08006 * 119.46635 * 180.29100 * 23 22 21 44 44 H 1.08001 * 120.27988 * 179.74633 * 24 23 22 45 45 H 1.08005 * 120.78119 * 180.26947 * 25 24 23 46 46 H 0.96705 * 114.00221 * 90.00317 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 4.3936 -3.2130 1.2597 12 6 5.8800 -2.9580 1.5174 13 7 6.2750 -3.5980 2.7793 14 6 5.6132 -2.9571 3.9249 15 6 6.0053 -3.6910 5.2101 16 8 7.4296 -3.6904 5.3379 17 6 8.1065 -4.3077 4.2395 18 6 7.7357 -3.5800 2.9446 19 6 4.0868 -3.2591 -1.1571 20 8 4.4305 -4.4251 -1.1501 21 6 3.7641 -2.5915 -2.4359 22 7 3.2719 -1.3574 -2.4302 23 6 2.9766 -0.7269 -3.5443 24 6 3.1579 -1.3326 -4.7795 25 6 3.6677 -2.6169 -4.8387 26 6 3.9786 -3.2631 -3.6440 27 8 4.4805 -4.5233 -3.6524 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8751 -0.6805 -0.8889 31 1 3.8063 -2.7960 2.0777 32 1 4.2151 -4.2863 1.1946 33 1 6.4675 -3.3751 0.6994 34 1 6.0586 -1.8847 1.5825 35 1 5.9271 -1.9153 3.9905 36 1 4.5322 -3.0045 3.7940 37 1 5.6441 -4.7186 5.1670 38 1 5.5626 -3.1854 6.0683 39 1 7.8065 -5.3531 4.1682 40 1 9.1837 -4.2479 4.3950 41 1 8.2041 -4.0821 2.0980 42 1 8.0837 -2.5481 2.9938 43 1 2.5828 0.2777 -3.4979 44 1 2.9070 -0.8040 -5.6873 45 1 3.8216 -3.1073 -5.7886 46 1 5.4460 -4.5619 -3.6913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273889116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:09 Heat of formation + Delta-G solvation = -42.761262 kcal Electronic energy + Delta-G solvation = -29982.939540 eV Core-core repulsion = 25874.631539 eV Total energy + Delta-G solvation = -4108.308002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.48054 -39.61593 -38.44343 -37.04462 -36.11735 -34.78995 -32.47108 -32.11889 -31.27996 -30.24127 -29.56473 -27.69393 -26.19209 -24.17249 -24.04996 -23.03702 -22.40555 -21.88629 -20.39401 -19.22329 -18.15661 -17.10493 -16.79654 -16.56977 -16.43630 -16.19529 -15.57499 -15.30977 -15.19014 -15.09196 -14.79605 -14.55721 -14.21811 -14.02296 -13.61590 -13.35664 -13.19436 -12.92898 -12.79453 -12.50610 -12.33378 -12.23572 -12.05737 -11.66012 -11.51043 -11.42764 -11.04924 -10.86781 -10.75659 -10.62321 -10.37993 -10.18400 -9.77628 -9.62330 -9.55516 -9.36478 -8.67652 -8.59184 -8.42238 -8.30949 -7.68186 -6.05670 -3.99377 0.97681 1.44308 3.23023 3.29483 3.31551 3.33052 3.45075 3.76481 3.99464 4.14249 4.38450 4.39635 4.75333 4.79950 4.92910 4.95591 5.01066 5.06709 5.10044 5.19763 5.24749 5.28946 5.36119 5.47204 5.49294 5.56747 5.66033 5.69751 5.75329 5.76359 5.86656 5.89636 6.10054 6.22148 6.24955 6.37386 6.53598 6.67969 6.92244 6.95969 7.04950 7.15213 7.45715 7.65575 7.79018 8.11536 8.25435 8.53493 8.87010 8.99706 9.55713 11.08041 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.004188 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.025852 B = 6684.595462 C = 8675.189309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.076 3.924 3 Si 0.872 3.128 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.497 4.497 8 H 0.069 0.931 9 C 0.197 3.803 10 N -0.572 5.572 11 C 0.122 3.878 12 C 0.045 3.955 13 N -0.532 5.532 14 C 0.011 3.989 15 C 0.065 3.935 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.019 3.981 19 C 0.568 3.432 20 O -0.546 6.546 21 C 0.058 3.942 22 N -0.376 5.376 23 C 0.079 3.921 24 C -0.140 4.140 25 C -0.125 4.125 26 C 0.107 3.893 27 O -0.471 6.471 28 H 0.262 0.738 29 H 0.017 0.983 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.044 0.956 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.041 0.959 43 H 0.158 0.842 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.199 -3.140 -1.668 14.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.125 4.125 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.536 4.536 8 H 0.088 0.912 9 C 0.076 3.924 10 N -0.302 5.302 11 C -0.001 4.001 12 C -0.084 4.084 13 N -0.258 5.258 14 C -0.117 4.117 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.355 3.645 20 O -0.424 6.424 21 C -0.081 4.081 22 N -0.088 5.088 23 C -0.081 4.081 24 C -0.160 4.160 25 C -0.151 4.151 26 C 0.059 3.941 27 O -0.279 6.279 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.176 0.824 44 H 0.153 0.847 45 H 0.157 0.843 46 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 13.461 -3.827 -0.655 14.010 hybrid contribution 0.732 1.624 -1.196 2.145 sum 14.193 -2.204 -1.851 14.482 Atomic orbital electron populations 1.69910 1.06175 1.26641 1.51343 1.24723 0.94446 0.98443 0.94884 0.86937 0.80217 0.84240 0.78604 1.19981 1.21625 1.19358 1.21166 0.88869 0.94418 1.49165 0.91244 1.20518 0.96256 0.77309 0.98297 1.47834 1.61170 1.16235 1.04938 1.21266 0.92717 0.99735 0.86420 1.22506 0.98073 0.96842 0.90946 1.62126 1.06461 1.55028 1.02199 1.22899 1.01009 0.96748 0.91043 1.22684 0.81018 1.00549 0.96989 1.87959 1.18957 1.80490 1.43363 1.22642 0.97008 0.96414 0.85140 1.22764 0.88903 1.00064 0.99245 1.17699 0.78182 0.85414 0.83209 1.90741 1.49503 1.15387 1.86779 1.21790 1.00748 0.91843 0.93706 1.68634 1.05030 1.06504 1.28632 1.23072 0.96843 1.00689 0.87454 1.22266 0.98789 0.95140 0.99826 1.21798 1.00542 0.94865 0.97942 1.19406 0.97936 0.84963 0.91810 1.84800 1.25764 1.21416 1.95956 0.92807 0.96466 0.90725 0.90255 0.89596 0.90572 0.94507 0.93815 0.88752 0.92140 0.88438 0.92215 0.88701 0.89692 0.94114 0.82450 0.84652 0.84347 0.75528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 13.96 55.43 0.77 -25.77 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 20.22 27.47 -169.99 -4.67 15.55 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 7 C -0.50 -13.34 8.57 -34.44 -0.30 -13.63 16 8 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 9 C 0.20 4.48 3.84 -5.19 -0.02 4.46 16 10 N -0.57 -12.03 2.48 -176.18 -0.44 -12.46 16 11 C 0.12 2.23 5.34 -4.05 -0.02 2.21 16 12 C 0.05 0.70 5.28 -3.83 -0.02 0.68 16 13 N -0.53 -7.29 4.73 -234.31 -1.11 -8.39 16 14 C 0.01 0.14 5.44 -3.71 -0.02 0.12 16 15 C 0.06 0.73 7.01 37.21 0.26 0.99 16 16 O -0.39 -4.84 10.83 -35.23 -0.38 -5.22 16 17 C 0.07 0.68 7.01 37.21 0.26 0.94 16 18 C 0.02 0.22 5.64 -3.71 -0.02 0.19 16 19 C 0.57 12.18 7.58 -12.34 -0.09 12.08 16 20 O -0.55 -12.16 14.72 -16.55 -0.24 -12.40 16 21 C 0.06 1.15 6.64 -82.88 -0.55 0.60 16 22 N -0.38 -7.63 5.00 -9.71 -0.05 -7.68 16 23 C 0.08 1.32 11.17 -17.55 -0.20 1.13 16 24 C -0.14 -1.86 10.10 -39.36 -0.40 -2.26 16 25 C -0.13 -1.70 10.12 -39.15 -0.40 -2.10 16 26 C 0.11 1.81 6.74 -38.56 -0.26 1.55 16 27 O -0.47 -7.51 11.60 -40.49 -0.47 -7.98 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.02 0.39 7.08 -51.93 -0.37 0.03 16 30 H 0.08 1.69 4.62 -53.00 -0.24 1.45 16 31 H 0.08 1.43 6.45 -51.93 -0.33 1.10 16 32 H 0.09 1.65 7.37 -51.93 -0.38 1.27 16 33 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 34 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 1.23 6.38 -51.93 -0.33 0.89 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.16 2.46 8.06 -52.48 -0.42 2.03 16 44 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.14 1.45 8.06 -52.48 -0.42 1.02 16 46 H 0.39 4.35 9.06 45.56 0.41 4.76 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -33.70 372.08 -8.75 -42.44 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.90 Total: 7.36 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -1.87 Total: 8.94 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.82 Total: -54.31 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -1.09 Total: -25.60 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.70 -8.75 -42.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273889116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.318 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds