Wall clock time and date at job start Tue Mar 31 2020 18:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48504 * 109.46836 * 269.99830 * 3 2 1 5 5 H 1.48498 * 109.47254 * 29.99280 * 3 2 1 6 6 H 1.48494 * 109.47399 * 150.00075 * 3 2 1 7 7 C 1.37876 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00173 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.47069 * 180.02562 * 9 7 2 11 11 C 1.46494 * 119.99709 * 262.78955 * 10 9 7 12 12 C 1.52999 * 109.47222 * 269.99757 * 11 10 9 13 13 N 1.46897 * 109.47218 * 180.02562 * 12 11 10 14 14 C 1.47013 * 111.00200 * 293.63518 * 13 12 11 15 15 C 1.53101 * 109.25981 * 177.60895 * 14 13 12 16 16 O 1.43010 * 109.26066 * 56.84955 * 15 14 13 17 17 C 1.43024 * 113.73686 * 301.33169 * 16 15 14 18 18 C 1.47017 * 111.00297 * 170.00037 * 13 12 11 19 19 C 1.34771 * 119.99716 * 82.79303 * 10 9 7 20 20 O 1.21561 * 119.99907 * 183.53864 * 19 10 9 21 21 C 1.47831 * 120.00740 * 3.53048 * 19 10 9 22 22 N 1.32864 * 119.77691 * 353.84226 * 21 19 10 23 23 C 1.31379 * 121.69158 * 179.74532 * 22 21 19 24 24 C 1.38763 * 121.06688 * 0.53870 * 23 22 21 25 25 C 1.38303 * 119.44463 * 359.47240 * 24 23 22 26 26 C 1.39345 * 118.44002 * 0.25147 * 25 24 23 27 27 O 1.35643 * 120.53761 * 179.97438 * 26 25 24 28 28 H 0.97004 * 119.99991 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47380 * 59.99702 * 9 7 2 30 30 H 1.09004 * 109.47034 * 299.99515 * 9 7 2 31 31 H 1.08994 * 109.47678 * 30.00141 * 11 10 9 32 32 H 1.08998 * 109.47217 * 150.00269 * 11 10 9 33 33 H 1.09005 * 109.47518 * 300.00579 * 12 11 10 34 34 H 1.09003 * 109.47067 * 60.00137 * 12 11 10 35 35 H 1.08999 * 109.50660 * 297.54529 * 14 13 12 36 36 H 1.08998 * 109.50552 * 57.67146 * 14 13 12 37 37 H 1.09002 * 109.50521 * 296.91189 * 15 14 13 38 38 H 1.08997 * 109.54417 * 176.80894 * 15 14 13 39 39 H 1.08997 * 109.50421 * 298.73314 * 17 16 15 40 40 H 1.09004 * 109.53838 * 178.62498 * 17 16 15 41 41 H 1.09002 * 109.50751 * 302.32982 * 18 13 12 42 42 H 1.09004 * 109.50454 * 62.41335 * 18 13 12 43 43 H 1.08006 * 119.46635 * 180.29100 * 23 22 21 44 44 H 1.08001 * 120.27988 * 179.74633 * 24 23 22 45 45 H 1.08005 * 120.78119 * 180.26947 * 25 24 23 46 46 H 0.96705 * 114.00221 * 90.00317 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 4.3936 -3.2130 1.2597 12 6 5.8800 -2.9580 1.5174 13 7 6.2750 -3.5980 2.7793 14 6 5.6132 -2.9571 3.9249 15 6 6.0053 -3.6910 5.2101 16 8 7.4296 -3.6904 5.3379 17 6 8.1065 -4.3077 4.2395 18 6 7.7357 -3.5800 2.9446 19 6 4.0868 -3.2591 -1.1571 20 8 4.4305 -4.4251 -1.1501 21 6 3.7641 -2.5915 -2.4359 22 7 3.2719 -1.3574 -2.4302 23 6 2.9766 -0.7269 -3.5443 24 6 3.1579 -1.3326 -4.7795 25 6 3.6677 -2.6169 -4.8387 26 6 3.9786 -3.2631 -3.6440 27 8 4.4805 -4.5233 -3.6524 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8751 -0.6805 -0.8889 31 1 3.8063 -2.7960 2.0777 32 1 4.2151 -4.2863 1.1946 33 1 6.4675 -3.3751 0.6994 34 1 6.0586 -1.8847 1.5825 35 1 5.9271 -1.9153 3.9905 36 1 4.5322 -3.0045 3.7940 37 1 5.6441 -4.7186 5.1670 38 1 5.5626 -3.1854 6.0683 39 1 7.8065 -5.3531 4.1682 40 1 9.1837 -4.2479 4.3950 41 1 8.2041 -4.0821 2.0980 42 1 8.0837 -2.5481 2.9938 43 1 2.5828 0.2777 -3.4979 44 1 2.9070 -0.8040 -5.6873 45 1 3.8216 -3.1073 -5.7886 46 1 5.4460 -4.5619 -3.6913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273889116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:08 Heat of formation + Delta-G solvation = -68.166665 kcal Electronic energy + Delta-G solvation = -29984.041201 eV Core-core repulsion = 25874.631539 eV Total energy + Delta-G solvation = -4109.409662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.85834 -40.64952 -39.88773 -38.33230 -37.35110 -36.32101 -34.43758 -33.40812 -32.21849 -31.56094 -30.95457 -29.43073 -27.42504 -25.48802 -25.04571 -24.30756 -24.24500 -23.15785 -21.39878 -20.71602 -19.38642 -19.02631 -18.35487 -17.97452 -17.61675 -17.14983 -16.89315 -16.60434 -16.45921 -16.23396 -15.99883 -15.84408 -15.70050 -15.45531 -14.85949 -14.72926 -14.50407 -14.47953 -14.25662 -13.97104 -13.77917 -13.52147 -13.20262 -13.09212 -12.85195 -12.60769 -12.46242 -12.33268 -12.18460 -11.97740 -11.88274 -11.67225 -11.48115 -11.07444 -10.82647 -10.73010 -10.59486 -9.97623 -9.75752 -9.53870 -9.33139 -8.17285 -6.16894 -0.31560 0.26600 1.40986 1.43364 1.52534 1.80518 2.04352 2.43226 2.74732 2.85693 2.95934 3.11270 3.21076 3.38113 3.72641 3.82441 3.89983 3.96194 3.96275 4.05225 4.12095 4.17478 4.28852 4.34883 4.40498 4.47866 4.56755 4.59159 4.69784 4.74130 4.75317 4.79788 4.87895 4.91469 4.99632 5.04409 5.07890 5.24014 5.59583 5.59875 5.76370 5.87133 5.89939 6.14924 6.26346 6.55858 6.71911 6.78911 6.94346 7.26849 7.44192 9.00585 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.004188 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.025852 B = 6684.595462 C = 8675.189309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.025 3.975 3 Si 0.937 3.063 4 H -0.249 1.249 5 H -0.293 1.293 6 H -0.253 1.253 7 C -0.491 4.491 8 H 0.011 0.989 9 C 0.211 3.789 10 N -0.581 5.581 11 C 0.124 3.876 12 C 0.064 3.936 13 N -0.541 5.541 14 C 0.010 3.990 15 C 0.068 3.932 16 O -0.402 6.402 17 C 0.065 3.935 18 C 0.018 3.982 19 C 0.560 3.440 20 O -0.565 6.565 21 C 0.015 3.985 22 N -0.417 5.417 23 C 0.058 3.942 24 C -0.111 4.111 25 C -0.112 4.112 26 C 0.108 3.892 27 O -0.484 6.484 28 H 0.263 0.737 29 H 0.021 0.979 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.038 0.962 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.115 0.885 39 H 0.062 0.938 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.039 0.961 43 H 0.166 0.834 44 H 0.185 0.815 45 H 0.181 0.819 46 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.372 -2.072 -3.499 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.171 4.171 3 Si 0.761 3.239 4 H -0.173 1.173 5 H -0.220 1.220 6 H -0.177 1.177 7 C -0.530 4.530 8 H 0.029 0.971 9 C 0.090 3.910 10 N -0.310 5.310 11 C 0.001 3.999 12 C -0.065 4.065 13 N -0.267 5.267 14 C -0.118 4.118 15 C -0.009 4.009 16 O -0.321 6.321 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.348 3.652 20 O -0.446 6.446 21 C -0.122 4.122 22 N -0.129 5.129 23 C -0.103 4.103 24 C -0.131 4.131 25 C -0.138 4.138 26 C 0.059 3.941 27 O -0.295 6.295 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.139 0.861 41 H 0.114 0.886 42 H 0.057 0.943 43 H 0.183 0.817 44 H 0.202 0.798 45 H 0.198 0.802 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 15.682 -2.788 -2.475 16.119 hybrid contribution 0.007 1.155 -0.734 1.369 sum 15.689 -1.632 -3.209 16.097 Atomic orbital electron populations 1.70080 1.08329 1.27734 1.53417 1.25515 0.95062 1.02343 0.94209 0.85894 0.79132 0.78829 0.80095 1.17310 1.21992 1.17677 1.21148 0.90831 0.92159 1.48898 0.97101 1.20278 0.93399 0.78565 0.98788 1.47878 1.61379 1.15823 1.05894 1.21290 0.94780 0.98456 0.85404 1.22202 0.95685 0.96689 0.91974 1.62123 1.08125 1.54822 1.01588 1.22926 1.00510 0.96726 0.91624 1.22727 0.80884 1.00667 0.96619 1.87944 1.19287 1.80751 1.44123 1.22798 0.98315 0.96129 0.83923 1.22866 0.87252 1.00375 1.00507 1.18158 0.77602 0.85383 0.84044 1.90696 1.50579 1.16018 1.87282 1.21674 1.03823 0.92814 0.93891 1.68307 1.06359 1.07138 1.31087 1.23401 0.97415 1.01272 0.88182 1.22697 0.95536 0.94763 1.00100 1.22223 0.98719 0.94731 0.98156 1.19599 0.97488 0.84976 0.92005 1.84734 1.27617 1.21235 1.95951 0.92775 0.96151 0.89487 0.90822 0.91156 0.90881 0.94767 0.94330 0.89617 0.91888 0.86706 0.91950 0.86132 0.88630 0.94263 0.81682 0.79785 0.80184 0.73293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.20 13.96 21.45 0.30 -57.90 16 2 C 0.03 1.42 5.47 84.65 0.46 1.88 16 3 Si 0.94 41.48 27.47 68.60 1.88 43.36 16 4 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 7 C -0.49 -27.55 8.57 25.60 0.22 -27.33 16 8 H 0.01 0.71 8.06 -2.91 -0.02 0.68 16 9 C 0.21 9.83 3.84 85.63 0.33 10.16 16 10 N -0.58 -25.46 2.48 -829.60 -2.06 -27.51 16 11 C 0.12 4.75 5.34 86.38 0.46 5.21 16 12 C 0.06 2.00 5.28 86.30 0.46 2.45 16 13 N -0.54 -14.77 4.73 -895.21 -4.23 -19.00 16 14 C 0.01 0.26 5.44 86.32 0.47 0.73 16 15 C 0.07 1.48 7.01 72.02 0.50 1.98 16 16 O -0.40 -9.41 10.83 -148.98 -1.61 -11.02 16 17 C 0.06 1.25 7.01 72.01 0.50 1.75 16 18 C 0.02 0.39 5.64 86.31 0.49 0.88 16 19 C 0.56 24.90 7.58 86.78 0.66 25.56 16 20 O -0.57 -26.11 14.72 17.00 0.25 -25.86 16 21 C 0.02 0.61 6.64 41.92 0.28 0.89 16 22 N -0.42 -16.87 5.00 -184.63 -0.92 -17.79 16 23 C 0.06 1.83 11.17 84.89 0.95 2.77 16 24 C -0.11 -2.50 10.10 22.41 0.23 -2.27 16 25 C -0.11 -2.63 10.12 22.55 0.23 -2.40 16 26 C 0.11 3.49 6.74 22.93 0.15 3.65 16 27 O -0.48 -14.89 11.60 -68.67 -0.80 -15.69 16 28 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.02 0.93 7.08 -2.39 -0.02 0.92 16 30 H 0.09 3.95 4.62 -4.49 -0.02 3.92 16 31 H 0.07 2.84 6.45 -2.39 -0.02 2.82 16 32 H 0.07 2.88 7.37 -2.39 -0.02 2.86 16 33 H 0.07 2.34 8.04 -2.38 -0.02 2.32 16 34 H 0.03 1.09 8.12 -2.39 -0.02 1.07 16 35 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 2.32 6.38 -2.39 -0.02 2.30 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.10 1.89 8.09 -2.39 -0.02 1.87 16 42 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.17 4.80 8.06 -2.91 -0.02 4.78 16 44 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 45 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 46 H 0.41 8.62 9.06 -74.05 -0.67 7.95 16 Total: -1.00 -77.59 372.08 -0.53 -78.12 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.27 Total: 27.37 kcal Atomic # 6 Polarization: 19.52 SS G_CDS: 6.39 Total: 25.91 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -6.91 Total: -122.20 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -2.16 Total: -52.56 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.88 Total: 43.36 kcal Total: -77.59 -0.53 -78.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273889116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.954 kcal (2) G-P(sol) polarization free energy of solvation -77.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds