Wall clock time and date at job start Tue Mar 31 2020 18:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47171 * 207.21101 * 3 2 1 5 5 N 1.46498 * 109.47351 * 180.02562 * 4 3 2 6 6 C 1.46500 * 120.00163 * 270.00497 * 5 4 3 7 7 C 1.50697 * 109.47062 * 269.99975 * 6 5 4 8 8 H 1.07998 * 120.00385 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00385 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00615 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99558 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47176 * 90.00129 * 11 9 7 13 13 H 1.48505 * 109.46909 * 209.99908 * 11 9 7 14 14 H 1.48499 * 109.47266 * 329.99947 * 11 9 7 15 15 C 1.34779 * 120.00271 * 90.00123 * 5 4 3 16 16 O 1.21277 * 120.00268 * 180.02562 * 15 5 4 17 17 C 1.50701 * 119.99700 * 0.02562 * 15 5 4 18 18 N 1.46899 * 109.47255 * 179.97438 * 17 15 5 19 19 C 1.46894 * 111.00150 * 185.21375 * 18 17 15 20 20 H 1.09004 * 109.46981 * 321.52517 * 19 18 17 21 21 C 1.53000 * 109.47280 * 201.52858 * 19 18 17 22 22 C 1.53004 * 109.47014 * 65.71269 * 21 19 18 23 23 O 1.42904 * 109.47106 * 174.48905 * 22 21 19 24 24 C 1.50696 * 109.47242 * 81.52702 * 19 18 17 25 25 C 1.34517 * 125.79041 * 219.99927 * 24 19 18 26 26 C 1.41379 * 106.84080 * 179.97438 * 25 24 19 27 27 C 1.34514 * 106.84294 * 0.02562 * 26 25 24 28 28 O 1.34298 * 125.79379 * 39.69372 * 24 19 18 29 29 H 1.09008 * 109.47368 * 87.21303 * 3 2 1 30 30 H 1.08997 * 109.47511 * 327.21716 * 3 2 1 31 31 H 1.09001 * 109.46828 * 60.00284 * 4 3 2 32 32 H 1.08993 * 109.47375 * 300.00167 * 4 3 2 33 33 H 1.09005 * 109.47056 * 29.99695 * 6 5 4 34 34 H 1.09001 * 109.47557 * 149.99470 * 6 5 4 35 35 H 0.97000 * 120.00660 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.46800 * 60.00021 * 17 15 5 37 37 H 1.09002 * 109.47289 * 300.00059 * 17 15 5 38 38 H 1.00896 * 110.99945 * 61.25569 * 18 17 15 39 39 H 1.08996 * 109.47439 * 185.71401 * 21 19 18 40 40 H 1.09003 * 109.46995 * 305.71484 * 21 19 18 41 41 H 1.08999 * 109.47349 * 294.48964 * 22 21 19 42 42 H 1.08997 * 109.47036 * 54.49512 * 22 21 19 43 43 H 0.96691 * 114.00016 * 180.02562 * 23 22 21 44 44 H 1.08005 * 126.57897 * 0.03602 * 25 24 19 45 45 H 1.08002 * 126.57874 * 179.97438 * 26 25 24 46 46 H 1.07999 * 125.78811 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.2838 0.6596 5 7 4.5823 1.2847 0.6591 6 6 5.3156 0.7048 1.7870 7 6 5.5665 1.7694 2.8237 8 1 5.2152 2.7772 2.6588 9 6 6.2445 1.4568 3.9829 10 7 6.4638 2.3859 4.8874 11 14 6.8515 -0.2866 4.2685 12 1 8.2247 -0.4286 3.7215 13 1 6.8671 -0.5728 5.7257 14 1 5.9451 -1.2445 3.5857 15 6 5.2555 1.8191 -0.3791 16 8 6.4683 1.8195 -0.3797 17 6 4.5012 2.4161 -1.5391 18 7 5.4551 2.9279 -2.5321 19 6 4.7582 3.6277 -3.6196 20 1 3.8359 3.0988 -3.8597 21 6 5.6576 3.6717 -4.8565 22 6 5.8718 2.2508 -5.3822 23 8 6.6038 2.3019 -6.6084 24 6 4.4327 5.0334 -3.1849 25 6 3.2902 5.6932 -3.4470 26 6 3.4103 6.9715 -2.8551 27 6 4.6194 7.0167 -2.2672 28 8 5.2318 5.8380 -2.4654 29 1 2.9713 -0.0491 -1.0265 30 1 2.9717 -0.8631 0.5564 31 1 2.7540 1.3335 1.6861 32 1 2.7536 2.1475 0.1032 33 1 4.7272 -0.1000 2.2277 34 1 6.2682 0.3081 1.4357 35 1 6.9405 2.1659 5.7031 36 1 3.8745 3.2336 -1.1828 37 1 3.8745 1.6510 -1.9974 38 1 6.0347 2.1851 -2.8931 39 1 5.1837 4.2773 -5.6290 40 1 6.6198 4.1097 -4.5908 41 1 6.4326 1.6725 -4.6480 42 1 4.9051 1.7781 -5.5556 43 1 6.7761 1.4347 -7.0000 44 1 2.4431 5.3180 -4.0021 45 1 2.6732 7.7606 -2.8724 46 1 5.0263 7.8565 -1.7235 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274413644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:21 Heat of formation + Delta-G solvation = -30.933882 kcal Electronic energy + Delta-G solvation = -28984.353150 eV Core-core repulsion = 24876.558022 eV Total energy + Delta-G solvation = -4107.795128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.52366 -39.53038 -37.98123 -36.97511 -36.26635 -35.30369 -33.00663 -32.83647 -31.94947 -31.04331 -29.62262 -28.48678 -26.33870 -24.67003 -24.04511 -22.12637 -21.96433 -21.60965 -20.14459 -18.67318 -18.02408 -17.76518 -17.29221 -16.84251 -16.60501 -16.18488 -15.99481 -15.73589 -15.41105 -14.96911 -14.71363 -14.51558 -14.23246 -14.04045 -13.78926 -13.63004 -13.01684 -12.85127 -12.79223 -12.60925 -12.58478 -12.53240 -12.28706 -12.23773 -12.05439 -11.81005 -11.63116 -11.60229 -11.37583 -11.10338 -10.88860 -10.57624 -10.29534 -10.22635 -9.89044 -9.59242 -9.17779 -8.62170 -8.60257 -8.48658 -7.92266 -6.11057 -4.10698 1.74999 2.58540 2.62422 2.70765 3.02000 3.18166 3.25633 3.30551 3.33072 3.40902 3.77934 3.93175 4.17902 4.36054 4.47142 4.65954 4.82556 4.86464 4.92636 4.95399 4.96314 5.03501 5.04418 5.12750 5.15961 5.17417 5.22471 5.35456 5.45535 5.64194 5.69715 5.77905 5.83164 5.89394 5.98131 6.08466 6.40312 6.52570 6.69528 6.86196 7.17056 7.18250 7.25441 7.27936 7.47051 7.55888 8.06369 8.42531 8.83495 8.94009 9.48138 11.02321 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008728 B = 0.003369 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.187401 B = 8309.649454 C = 8716.340439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.215 3.785 3 C -0.050 4.050 4 C 0.117 3.883 5 N -0.594 5.594 6 C 0.216 3.784 7 C -0.531 4.531 8 H 0.075 0.925 9 C 0.073 3.927 10 N -0.895 5.895 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.266 1.266 15 C 0.510 3.490 16 O -0.514 6.514 17 C 0.039 3.961 18 N -0.663 5.663 19 C 0.173 3.827 20 H 0.075 0.925 21 C -0.121 4.121 22 C 0.073 3.927 23 O -0.571 6.571 24 C 0.006 3.994 25 C -0.216 4.216 26 C -0.220 4.220 27 C -0.038 4.038 28 O -0.149 6.149 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.355 0.645 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.381 0.619 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.367 -0.087 -20.381 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.103 4.103 3 C -0.092 4.092 4 C -0.010 4.010 5 N -0.326 5.326 6 C 0.096 3.904 7 C -0.570 4.570 8 H 0.093 0.907 9 C -0.129 4.129 10 N -0.534 5.534 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.296 3.704 16 O -0.388 6.388 17 C -0.094 4.094 18 N -0.298 5.298 19 C 0.063 3.937 20 H 0.093 0.907 21 C -0.159 4.159 22 C -0.005 4.005 23 O -0.377 6.377 24 C -0.046 4.046 25 C -0.236 4.236 26 C -0.239 4.239 27 C -0.106 4.106 28 O -0.043 6.043 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.074 0.926 38 H 0.178 0.822 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.228 0.772 44 H 0.162 0.838 45 H 0.163 0.837 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.881 1.052 -19.602 20.801 hybrid contribution 0.040 -1.894 -0.081 1.896 sum -6.841 -0.842 -19.683 20.855 Atomic orbital electron populations 1.81220 1.13006 1.08635 1.08984 1.29051 0.95062 0.93193 0.93030 1.19895 0.81505 1.03134 1.04624 1.21326 0.81921 0.94648 1.03085 1.47875 1.04832 1.59352 1.20573 1.19707 0.92443 0.94422 0.83819 1.21312 1.37203 0.97230 1.01217 0.90652 1.24858 0.95215 0.97081 0.95775 1.69890 1.41259 1.33088 1.09119 0.86876 0.80145 0.85203 0.77563 1.19905 1.21139 1.19034 1.20158 0.88215 0.78738 0.83273 1.90705 1.13533 1.55448 1.79141 1.21990 0.94568 0.99625 0.93188 1.59943 1.22257 1.33839 1.13758 1.19868 0.96747 0.87259 0.89827 0.90693 1.21672 1.01756 0.96865 0.95611 1.22210 0.94957 0.97170 0.86197 1.86471 1.77508 1.34800 1.38912 1.22199 0.90569 0.93533 0.98349 1.21525 0.99122 0.95607 1.07314 1.21752 0.98703 0.98911 1.04582 1.24136 0.94096 0.88467 1.03950 1.84160 1.42287 1.21818 1.55990 0.87701 0.86613 0.88442 0.90430 0.95044 0.94295 0.92523 0.88265 0.92605 0.82210 0.89822 0.89339 0.93001 0.93600 0.77179 0.83828 0.83720 0.78304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.11 18.54 42.15 0.78 -5.33 16 2 C 0.21 2.37 15.43 -20.76 -0.32 2.05 16 3 C -0.05 -0.45 6.03 -29.52 -0.18 -0.63 16 4 C 0.12 1.46 5.17 -4.04 -0.02 1.44 16 5 N -0.59 -10.25 2.46 -175.06 -0.43 -10.68 16 6 C 0.22 4.71 4.23 -5.20 -0.02 4.69 16 7 C -0.53 -14.43 9.94 -34.44 -0.34 -14.77 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 9 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 11 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.27 -5.71 6.54 56.52 0.37 -5.34 16 15 C 0.51 8.96 7.72 -10.98 -0.08 8.88 16 16 O -0.51 -11.47 15.89 5.56 0.09 -11.38 16 17 C 0.04 0.48 4.51 -4.98 -0.02 0.46 16 18 N -0.66 -8.29 5.81 -109.22 -0.64 -8.93 16 19 C 0.17 1.74 2.49 -68.87 -0.17 1.56 16 20 H 0.08 0.58 7.90 -51.93 -0.41 0.17 16 21 C -0.12 -1.13 5.17 -26.73 -0.14 -1.27 16 22 C 0.07 0.56 6.77 37.16 0.25 0.81 16 23 O -0.57 -4.84 13.66 -35.23 -0.48 -5.32 16 24 C 0.01 0.07 5.69 -35.63 -0.20 -0.14 16 25 C -0.22 -2.36 10.80 -39.70 -0.43 -2.79 16 26 C -0.22 -2.39 10.91 -39.70 -0.43 -2.83 16 27 C -0.04 -0.44 12.09 29.42 0.36 -0.09 16 28 O -0.15 -2.15 10.64 5.73 0.06 -2.08 16 29 H 0.10 0.70 7.22 -51.92 -0.38 0.32 16 30 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 1.33 8.07 -51.93 -0.42 0.92 16 32 H 0.08 0.84 6.44 -51.93 -0.33 0.50 16 33 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 34 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 36 H 0.10 1.27 7.03 -51.93 -0.37 0.90 16 37 H 0.06 0.48 7.19 -51.93 -0.37 0.11 16 38 H 0.36 4.15 6.52 -39.29 -0.26 3.90 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.39 6.65 -51.93 -0.35 0.04 16 42 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.38 1.49 9.12 45.56 0.42 1.91 16 44 H 0.14 1.25 8.06 -52.48 -0.42 0.82 16 45 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 46 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 394.82 15.07 5.95 5.95 Total: -1.00 -37.51 394.82 -6.16 -43.66 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.74 Total: 5.12 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.86 Total: -0.68 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.49 Total: -51.16 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.33 Total: -18.79 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.51 -6.16 -43.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274413644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.729 kcal (2) G-P(sol) polarization free energy of solvation -37.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds