Wall clock time and date at job start Tue Mar 31 2020 18:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47306 * 180.02562 * 10 9 7 12 12 C 1.35984 * 116.99762 * 180.02562 * 11 10 9 13 13 C 1.38779 * 120.49925 * 359.97438 * 12 11 10 14 14 C 1.38793 * 118.44744 * 179.97438 * 13 12 11 15 15 C 1.38068 * 119.35793 * 359.97438 * 14 13 12 16 16 N 1.31969 * 120.95200 * 0.02562 * 15 14 13 17 17 C 1.32271 * 121.69045 * 359.72954 * 16 15 14 18 18 N 1.39583 * 119.72960 * 180.26716 * 17 16 15 19 19 C 1.34766 * 120.00008 * 0.26576 * 18 17 16 20 20 O 1.21592 * 120.00347 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00282 * 180.02562 * 19 18 17 22 22 C 1.46504 * 120.00609 * 179.97438 * 21 19 18 23 23 C 1.52993 * 109.47297 * 179.97438 * 22 21 19 24 24 H 1.08996 * 110.80943 * 305.70065 * 23 22 21 25 25 C 1.54815 * 110.90449 * 182.07090 * 23 22 21 26 26 C 1.54099 * 104.18999 * 220.92133 * 25 23 22 27 27 O 1.43747 * 107.29288 * 357.97808 * 26 25 23 28 28 C 1.44420 * 107.00311 * 26.48232 * 27 26 25 29 29 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 31 31 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 32 32 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 33 33 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 34 34 H 1.07999 * 120.77565 * 0.02562 * 13 12 11 35 35 H 1.07999 * 120.31990 * 180.02562 * 14 13 12 36 36 H 1.08001 * 119.52590 * 180.02562 * 15 14 13 37 37 H 0.97000 * 120.00098 * 180.26203 * 18 17 16 38 38 H 0.97000 * 119.99824 * 359.97438 * 21 19 18 39 39 H 1.08997 * 109.46861 * 300.00392 * 22 21 19 40 40 H 1.09001 * 109.46650 * 59.99741 * 22 21 19 41 41 H 1.08999 * 110.49019 * 339.60214 * 25 23 22 42 42 H 1.09008 * 110.48494 * 102.11668 * 25 23 22 43 43 H 1.09001 * 109.87675 * 117.39758 * 26 25 23 44 44 H 1.08993 * 109.88329 * 238.55009 * 26 25 23 45 45 H 1.08998 * 110.65443 * 201.48711 * 28 27 26 46 46 H 1.09002 * 110.60002 * 78.47063 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0031 11 8 5.4506 -2.6365 -0.0085 12 6 6.0679 -3.8482 -0.0075 13 6 5.3222 -5.0186 -0.0010 14 6 5.9961 -6.2319 -0.0008 15 6 7.3768 -6.2393 -0.0076 16 7 8.0616 -5.1112 -0.0137 17 6 7.4600 -3.9332 -0.0190 18 7 8.2247 -2.7656 -0.0310 19 6 9.5702 -2.8414 -0.0427 20 8 10.1181 -3.9268 -0.0422 21 7 10.3086 -1.7139 -0.0538 22 6 11.7713 -1.7962 -0.0659 23 6 12.3615 -0.3848 -0.0776 24 1 11.9553 0.1979 -0.9043 25 6 13.9075 -0.4330 -0.1429 26 6 14.3613 0.6745 0.8278 27 8 13.1758 1.3069 1.3388 28 6 12.1149 0.3290 1.2760 29 1 -0.4850 0.8401 0.0004 30 1 3.8712 -0.6827 -0.8987 31 1 3.8785 -0.6777 0.8813 32 1 3.6619 -3.1474 0.8900 33 1 3.6545 -3.1533 -0.8899 34 1 4.2427 -4.9860 0.0030 35 1 5.4459 -7.1612 0.0037 36 1 7.9039 -7.1819 -0.0079 37 1 7.7877 -1.8996 -0.0310 38 1 9.8716 -0.8480 -0.0538 39 1 12.1128 -2.3259 0.8234 40 1 12.0976 -2.3335 -0.9564 41 1 14.2733 -1.4046 0.1890 42 1 14.2534 -0.2214 -1.1547 43 1 14.9312 0.2378 1.6480 44 1 14.9718 1.4051 0.2973 45 1 11.1407 0.8178 1.2802 46 1 12.1949 -0.3772 2.1025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274865039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:32 Heat of formation + Delta-G solvation = -67.801367 kcal Electronic energy + Delta-G solvation = -28021.409154 eV Core-core repulsion = 23912.015332 eV Total energy + Delta-G solvation = -4109.393822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.00710 -40.09777 -39.35906 -37.89402 -35.64481 -34.72749 -33.45811 -32.62913 -31.64456 -30.90910 -29.88532 -29.05804 -26.11973 -25.62132 -23.63452 -22.94050 -22.70695 -21.23602 -21.05215 -20.48237 -18.77659 -18.20087 -17.71413 -17.09279 -16.59171 -16.28530 -16.07211 -15.93902 -15.72439 -15.31797 -15.27278 -14.63069 -14.43758 -14.27147 -14.11385 -13.98141 -13.77607 -13.36130 -13.10077 -12.70534 -12.58240 -12.21852 -12.17778 -12.06561 -11.86634 -11.42639 -11.26212 -11.17754 -11.00138 -10.76682 -10.51230 -10.32558 -10.17207 -10.12160 -9.94868 -9.46208 -9.37034 -9.18732 -9.13845 -8.71093 -7.70953 -6.21740 -4.23507 1.21901 1.40939 2.32279 3.12983 3.20886 3.28961 3.31539 3.42368 3.45847 3.76621 4.00133 4.06487 4.22784 4.30397 4.38972 4.59903 4.62002 4.78582 4.83125 4.91923 5.02363 5.11997 5.13634 5.19446 5.27564 5.30304 5.33531 5.39912 5.43475 5.50690 5.67338 5.75185 5.77779 5.99916 6.13115 6.19370 6.27828 6.36148 6.40339 6.48318 6.70817 6.93983 7.10039 7.48476 7.58050 7.67783 8.18157 8.29335 8.53200 8.78596 9.37817 10.90670 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008697 B = 0.002753 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.910535 B =10167.640422 C =13222.010495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.007 4.007 10 C 0.074 3.926 11 O -0.321 6.321 12 C 0.064 3.936 13 C -0.144 4.144 14 C -0.162 4.162 15 C 0.078 3.922 16 N -0.442 5.442 17 C 0.347 3.653 18 N -0.662 5.662 19 C 0.697 3.303 20 O -0.534 6.534 21 N -0.748 5.748 22 C 0.152 3.848 23 C -0.136 4.136 24 H 0.095 0.905 25 C -0.148 4.148 26 C 0.046 3.954 27 O -0.378 6.378 28 C 0.050 3.950 29 H 0.267 0.733 30 H 0.023 0.977 31 H 0.028 0.972 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.146 0.854 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.419 0.581 38 H 0.397 0.603 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.947 -4.154 -0.104 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.045 4.045 10 C 0.000 4.000 11 O -0.234 6.234 12 C 0.012 3.988 13 C -0.171 4.171 14 C -0.183 4.183 15 C -0.079 4.079 16 N -0.157 5.157 17 C 0.113 3.887 18 N -0.311 5.311 19 C 0.396 3.604 20 O -0.405 6.405 21 N -0.406 5.406 22 C 0.028 3.972 23 C -0.155 4.155 24 H 0.113 0.887 25 C -0.186 4.186 26 C -0.031 4.031 27 O -0.297 6.297 28 C -0.027 4.027 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.164 0.836 35 H 0.153 0.847 36 H 0.174 0.826 37 H 0.256 0.744 38 H 0.231 0.769 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.113 0.887 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 26.342 -4.610 -0.024 26.742 hybrid contribution -1.321 1.370 -0.137 1.908 sum 25.021 -3.240 -0.162 25.231 Atomic orbital electron populations 1.69887 1.06292 1.27307 1.49841 1.24943 0.94771 0.99230 0.94060 0.86750 0.80399 0.83304 0.78727 1.20065 1.21139 1.18812 1.20810 0.88230 0.94975 1.52694 0.90716 1.19580 0.97041 0.89997 0.97858 1.23134 0.73992 1.02224 1.00691 1.86041 1.24542 1.24808 1.87975 1.19490 0.90841 0.87011 1.01453 1.21617 1.01241 0.91349 1.02880 1.21904 0.95526 0.98251 1.02636 1.22431 0.91101 0.95574 0.98744 1.67629 1.38320 0.96218 1.13514 1.17470 0.84092 0.86638 1.00507 1.42469 1.04962 1.08019 1.75667 1.15917 0.81017 0.84749 0.78697 1.91037 1.70184 1.25796 1.53528 1.45129 1.06743 1.07579 1.81126 1.21125 0.78028 0.95167 1.02908 1.23020 0.96221 0.96590 0.99715 0.88687 1.22920 0.94162 1.00267 1.01236 1.23166 0.88603 0.95103 0.96179 1.88904 1.19199 1.36455 1.85128 1.23694 0.92001 0.91274 0.95713 0.92361 0.95847 0.95392 0.92309 0.92344 0.83586 0.84694 0.82584 0.74366 0.76924 0.91114 0.90980 0.89969 0.89922 0.92199 0.89739 0.88693 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 13.96 55.43 0.77 -25.61 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 7 C -0.53 -14.18 9.66 -34.44 -0.33 -14.52 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.16 4.41 -27.88 -0.12 -0.29 16 10 C 0.07 1.37 4.70 37.16 0.17 1.54 16 11 O -0.32 -5.48 9.39 -19.69 -0.18 -5.66 16 12 C 0.06 1.01 6.72 -38.92 -0.26 0.75 16 13 C -0.14 -2.02 9.14 -39.18 -0.36 -2.38 16 14 C -0.16 -1.95 10.10 -39.44 -0.40 -2.35 16 15 C 0.08 1.03 11.17 -17.55 -0.20 0.84 16 16 N -0.44 -7.24 7.87 -12.22 -0.10 -7.33 16 17 C 0.35 5.53 7.45 -154.43 -1.15 4.38 16 18 N -0.66 -9.12 5.40 -15.67 -0.08 -9.21 16 19 C 0.70 9.58 8.53 -86.93 -0.74 8.84 16 20 O -0.53 -9.32 14.59 5.28 0.08 -9.24 16 21 N -0.75 -6.98 5.45 -65.23 -0.36 -7.33 16 22 C 0.15 1.21 5.01 -4.04 -0.02 1.19 16 23 C -0.14 -0.83 3.16 -88.61 -0.28 -1.11 16 24 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 25 C -0.15 -0.76 6.60 -25.20 -0.17 -0.93 16 26 C 0.05 0.29 7.70 37.73 0.29 0.58 16 27 O -0.38 -3.45 11.52 -35.23 -0.41 -3.86 16 28 C 0.05 0.36 7.02 38.21 0.27 0.62 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.02 0.52 7.58 -51.93 -0.39 0.12 16 31 H 0.03 0.63 7.19 -51.93 -0.37 0.25 16 32 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 33 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 34 H 0.15 1.91 6.44 -52.49 -0.34 1.57 16 35 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.42 4.93 8.06 -40.82 -0.33 4.60 16 38 H 0.40 2.74 8.44 -40.82 -0.34 2.40 16 39 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.38 7.86 -51.93 -0.41 -0.03 16 42 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.47 7.98 -51.93 -0.41 0.06 16 LS Contribution 381.47 15.07 5.75 5.75 Total: -1.00 -34.27 381.47 -9.37 -43.64 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.79 Total: 3.85 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -3.39 Total: -0.92 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.24 Total: -49.48 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.51 Total: -18.76 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.27 -9.37 -43.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274865039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.161 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds