Wall clock time and date at job start Tue Mar 31 2020 18:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47306 * 180.02562 * 10 9 7 12 12 C 1.35984 * 116.99762 * 180.02562 * 11 10 9 13 13 C 1.38779 * 120.49925 * 359.97438 * 12 11 10 14 14 C 1.38793 * 118.44744 * 179.97438 * 13 12 11 15 15 C 1.38068 * 119.35793 * 359.97438 * 14 13 12 16 16 N 1.31969 * 120.95200 * 0.02562 * 15 14 13 17 17 C 1.32271 * 121.69045 * 359.72954 * 16 15 14 18 18 N 1.39583 * 119.72960 * 180.26716 * 17 16 15 19 19 C 1.34766 * 120.00008 * 0.26576 * 18 17 16 20 20 O 1.21592 * 120.00347 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00282 * 180.02562 * 19 18 17 22 22 C 1.46504 * 120.00609 * 179.97438 * 21 19 18 23 23 C 1.52993 * 109.47297 * 179.97438 * 22 21 19 24 24 H 1.08996 * 110.80943 * 305.70065 * 23 22 21 25 25 C 1.54815 * 110.90449 * 182.07090 * 23 22 21 26 26 C 1.54099 * 104.18999 * 220.92133 * 25 23 22 27 27 O 1.43747 * 107.29288 * 357.97808 * 26 25 23 28 28 C 1.44420 * 107.00311 * 26.48232 * 27 26 25 29 29 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 31 31 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 32 32 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 33 33 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 34 34 H 1.07999 * 120.77565 * 0.02562 * 13 12 11 35 35 H 1.07999 * 120.31990 * 180.02562 * 14 13 12 36 36 H 1.08001 * 119.52590 * 180.02562 * 15 14 13 37 37 H 0.97000 * 120.00098 * 180.26203 * 18 17 16 38 38 H 0.97000 * 119.99824 * 359.97438 * 21 19 18 39 39 H 1.08997 * 109.46861 * 300.00392 * 22 21 19 40 40 H 1.09001 * 109.46650 * 59.99741 * 22 21 19 41 41 H 1.08999 * 110.49019 * 339.60214 * 25 23 22 42 42 H 1.09008 * 110.48494 * 102.11668 * 25 23 22 43 43 H 1.09001 * 109.87675 * 117.39758 * 26 25 23 44 44 H 1.08993 * 109.88329 * 238.55009 * 26 25 23 45 45 H 1.08998 * 110.65443 * 201.48711 * 28 27 26 46 46 H 1.09002 * 110.60002 * 78.47063 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0031 11 8 5.4506 -2.6365 -0.0085 12 6 6.0679 -3.8482 -0.0075 13 6 5.3222 -5.0186 -0.0010 14 6 5.9961 -6.2319 -0.0008 15 6 7.3768 -6.2393 -0.0076 16 7 8.0616 -5.1112 -0.0137 17 6 7.4600 -3.9332 -0.0190 18 7 8.2247 -2.7656 -0.0310 19 6 9.5702 -2.8414 -0.0427 20 8 10.1181 -3.9268 -0.0422 21 7 10.3086 -1.7139 -0.0538 22 6 11.7713 -1.7962 -0.0659 23 6 12.3615 -0.3848 -0.0776 24 1 11.9553 0.1979 -0.9043 25 6 13.9075 -0.4330 -0.1429 26 6 14.3613 0.6745 0.8278 27 8 13.1758 1.3069 1.3388 28 6 12.1149 0.3290 1.2760 29 1 -0.4850 0.8401 0.0004 30 1 3.8712 -0.6827 -0.8987 31 1 3.8785 -0.6777 0.8813 32 1 3.6619 -3.1474 0.8900 33 1 3.6545 -3.1533 -0.8899 34 1 4.2427 -4.9860 0.0030 35 1 5.4459 -7.1612 0.0037 36 1 7.9039 -7.1819 -0.0079 37 1 7.7877 -1.8996 -0.0310 38 1 9.8716 -0.8480 -0.0538 39 1 12.1128 -2.3259 0.8234 40 1 12.0976 -2.3335 -0.9564 41 1 14.2733 -1.4046 0.1890 42 1 14.2534 -0.2214 -1.1547 43 1 14.9312 0.2378 1.6480 44 1 14.9718 1.4051 0.2973 45 1 11.1407 0.8178 1.2802 46 1 12.1949 -0.3772 2.1025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274865039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:32 Heat of formation + Delta-G solvation = -91.865670 kcal Electronic energy + Delta-G solvation = -28022.452661 eV Core-core repulsion = 23912.015332 eV Total energy + Delta-G solvation = -4110.437328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.09111 -40.91011 -40.19745 -39.12946 -36.45989 -35.83788 -35.38230 -33.33962 -33.03990 -32.35560 -30.67217 -29.98016 -27.30502 -26.81474 -24.79358 -23.97982 -23.41971 -22.52277 -21.91568 -21.55456 -19.86868 -19.41468 -18.99121 -18.25551 -17.65670 -17.27644 -17.23057 -16.79593 -16.68700 -16.31057 -16.13688 -16.04840 -15.57230 -15.30850 -15.20469 -15.02115 -14.73460 -14.67127 -14.10665 -14.03736 -13.76347 -13.32680 -13.31886 -12.84893 -12.70690 -12.68476 -12.34106 -12.18563 -12.00483 -11.86855 -11.81468 -11.64086 -11.61739 -11.58868 -11.44778 -10.79852 -10.67607 -10.44002 -10.24772 -10.12008 -8.82603 -8.32814 -6.39591 0.15111 0.30096 1.38306 1.38998 1.40163 1.51529 2.08649 2.10749 2.34788 2.87471 2.91822 2.99554 3.02855 3.49958 3.59388 3.73582 3.86045 3.86148 3.98017 4.13620 4.17473 4.25469 4.26797 4.31098 4.33698 4.46802 4.57411 4.68444 4.70877 4.78965 4.86256 4.89238 4.95555 5.03146 5.07249 5.15828 5.18410 5.28214 5.33691 5.40228 5.49096 5.57863 5.80157 5.88916 6.17480 6.30151 6.67207 6.70364 7.15582 7.25634 7.52050 8.82724 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008697 B = 0.002753 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.910535 B =10167.640422 C =13222.010495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.535 4.535 8 H 0.042 0.958 9 C -0.005 4.005 10 C 0.086 3.914 11 O -0.324 6.324 12 C 0.041 3.959 13 C -0.148 4.148 14 C -0.149 4.149 15 C 0.076 3.924 16 N -0.473 5.473 17 C 0.332 3.668 18 N -0.659 5.659 19 C 0.694 3.306 20 O -0.575 6.575 21 N -0.731 5.731 22 C 0.155 3.845 23 C -0.124 4.124 24 H 0.103 0.897 25 C -0.144 4.144 26 C 0.040 3.960 27 O -0.404 6.404 28 C 0.046 3.954 29 H 0.269 0.731 30 H 0.029 0.971 31 H 0.031 0.969 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.154 0.846 35 H 0.173 0.827 36 H 0.185 0.815 37 H 0.426 0.574 38 H 0.410 0.590 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.741 -4.048 -0.396 27.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.167 1.167 7 C -0.573 4.573 8 H 0.060 0.940 9 C -0.043 4.043 10 C 0.012 3.988 11 O -0.237 6.237 12 C -0.010 4.010 13 C -0.174 4.174 14 C -0.170 4.170 15 C -0.080 4.080 16 N -0.188 5.188 17 C 0.099 3.901 18 N -0.310 5.310 19 C 0.393 3.607 20 O -0.449 6.449 21 N -0.389 5.389 22 C 0.031 3.969 23 C -0.143 4.143 24 H 0.121 0.879 25 C -0.182 4.182 26 C -0.036 4.036 27 O -0.323 6.323 28 C -0.030 4.030 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.171 0.829 35 H 0.190 0.810 36 H 0.202 0.798 37 H 0.265 0.735 38 H 0.247 0.753 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.113 0.887 45 H 0.119 0.881 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 28.163 -4.472 -0.317 28.517 hybrid contribution -1.860 1.175 -0.035 2.200 sum 26.303 -3.297 -0.352 26.511 Atomic orbital electron populations 1.70033 1.08229 1.28428 1.51694 1.25905 0.95589 1.03411 0.93780 0.85680 0.79629 0.78211 0.79309 1.19092 1.21074 1.16735 1.21127 0.90707 0.93791 1.51709 0.93962 1.19433 0.94125 0.92634 0.98074 1.22748 0.75205 0.99806 1.01061 1.85964 1.23194 1.25841 1.88728 1.19599 0.90973 0.86970 1.03418 1.21877 1.01695 0.91623 1.02250 1.22256 0.95218 0.98963 1.00546 1.23030 0.91933 0.95829 0.97233 1.67685 1.39431 0.97068 1.14604 1.17647 0.84327 0.87205 1.00940 1.42467 1.05045 1.07978 1.75472 1.16104 0.81006 0.85152 0.78409 1.90999 1.70841 1.27552 1.55544 1.45046 1.07165 1.07072 1.79589 1.21173 0.77023 0.96321 1.02370 1.22914 0.96884 0.95116 0.99427 0.87924 1.22929 0.93218 1.00262 1.01775 1.23335 0.87991 0.95647 0.96673 1.88875 1.20344 1.37588 1.85540 1.23766 0.92009 0.91151 0.96117 0.92235 0.95220 0.95093 0.92046 0.92031 0.82888 0.80999 0.79811 0.73511 0.75329 0.91811 0.91382 0.89384 0.88616 0.91761 0.88750 0.88136 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.69 13.96 21.45 0.30 -56.39 16 2 C 0.01 0.62 5.47 84.66 0.46 1.08 16 3 Si 0.95 41.85 27.47 68.60 1.88 43.73 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 7 C -0.54 -28.94 9.66 25.60 0.25 -28.69 16 8 H 0.04 2.48 7.99 -2.92 -0.02 2.46 16 9 C -0.01 -0.22 4.41 29.85 0.13 -0.09 16 10 C 0.09 3.13 4.70 71.98 0.34 3.47 16 11 O -0.32 -10.72 9.39 -93.37 -0.88 -11.60 16 12 C 0.04 1.27 6.72 22.70 0.15 1.42 16 13 C -0.15 -3.90 9.14 22.53 0.21 -3.69 16 14 C -0.15 -3.19 10.10 22.36 0.23 -2.97 16 15 C 0.08 1.86 11.17 84.63 0.95 2.81 16 16 N -0.47 -15.05 7.87 -192.58 -1.52 -16.57 16 17 C 0.33 10.37 7.45 132.99 0.99 11.37 16 18 N -0.66 -17.82 5.40 -321.76 -1.74 -19.55 16 19 C 0.69 18.74 8.53 179.06 1.53 20.27 16 20 O -0.57 -20.02 14.59 -4.01 -0.06 -20.08 16 21 N -0.73 -12.87 5.45 -478.55 -2.61 -15.48 16 22 C 0.15 2.30 5.01 86.38 0.43 2.73 16 23 C -0.12 -1.32 3.16 -9.49 -0.03 -1.35 16 24 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 25 C -0.14 -1.23 6.60 31.59 0.21 -1.02 16 26 C 0.04 0.44 7.70 72.35 0.56 1.00 16 27 O -0.40 -6.94 11.52 -148.98 -1.72 -8.66 16 28 C 0.05 0.61 7.02 72.67 0.51 1.12 16 29 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.03 1.26 7.58 -2.39 -0.02 1.24 16 31 H 0.03 1.33 7.19 -2.39 -0.02 1.32 16 32 H 0.06 2.17 7.70 -2.39 -0.02 2.15 16 33 H 0.06 2.17 7.70 -2.38 -0.02 2.15 16 34 H 0.15 3.75 6.44 -2.91 -0.02 3.74 16 35 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 36 H 0.19 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.43 9.68 8.06 -92.71 -0.75 8.93 16 38 H 0.41 5.04 8.44 -92.71 -0.78 4.26 16 39 H 0.06 1.07 8.05 -2.39 -0.02 1.05 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 0.66 7.86 -2.39 -0.02 0.64 16 42 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.06 0.85 7.98 -2.39 -0.02 0.83 16 Total: -1.00 -74.90 381.47 0.01 -74.89 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -0.57 Total: 22.26 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 6.91 Total: 7.45 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -5.56 Total: -107.99 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -2.65 Total: -40.34 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.88 Total: 43.73 kcal Total: -74.90 0.01 -74.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274865039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.972 kcal (2) G-P(sol) polarization free energy of solvation -74.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds