Wall clock time and date at job start Tue Mar 31 2020 18:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00318 * 2 1 4 4 H 1.48501 * 109.46959 * 275.75169 * 3 2 1 5 5 H 1.48493 * 109.47133 * 35.75288 * 3 2 1 6 6 H 1.48501 * 109.47098 * 155.75447 * 3 2 1 7 7 C 1.37878 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99553 * 348.19831 * 7 2 1 9 9 C 1.50694 * 120.00470 * 168.19244 * 7 2 1 10 10 C 1.53005 * 115.54957 * 326.07517 * 9 7 2 11 11 N 1.46501 * 109.47099 * 280.00396 * 10 9 7 12 12 C 1.34779 * 119.99960 * 185.03949 * 11 10 9 13 13 O 1.21592 * 119.99841 * 355.03393 * 12 11 10 14 14 N 1.34773 * 120.00101 * 175.03204 * 12 11 10 15 15 C 1.47078 * 120.87968 * 185.21076 * 14 12 11 16 16 C 1.53244 * 108.51854 * 231.20763 * 15 14 12 17 17 N 1.46906 * 109.34053 * 306.16854 * 16 15 14 18 18 C 1.46896 * 111.00007 * 187.25368 * 17 16 15 19 19 C 1.53001 * 109.47236 * 79.23622 * 18 17 16 20 20 F 1.39902 * 109.46858 * 52.54949 * 19 18 17 21 21 F 1.39892 * 109.47481 * 172.55196 * 19 18 17 22 22 F 1.39903 * 109.47128 * 292.55412 * 19 18 17 23 23 C 1.46894 * 111.26493 * 63.10446 * 17 16 15 24 24 C 1.47073 * 120.87918 * 5.23287 * 14 12 11 25 25 C 1.53002 * 117.51987 * 111.77429 * 9 7 2 26 26 C 1.52997 * 117.50303 * 180.40548 * 9 7 2 27 27 H 0.97001 * 119.99554 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47039 * 160.00195 * 10 9 7 29 29 H 1.09007 * 109.46933 * 40.00269 * 10 9 7 30 30 H 0.96994 * 119.99964 * 5.03140 * 11 10 9 31 31 H 1.09001 * 109.62726 * 111.50203 * 15 14 12 32 32 H 1.08996 * 109.63200 * 350.91597 * 15 14 12 33 33 H 1.08997 * 109.49086 * 186.21454 * 16 15 14 34 34 H 1.08993 * 109.51789 * 66.14071 * 16 15 14 35 35 H 1.09003 * 109.46863 * 199.22912 * 18 17 16 36 36 H 1.08992 * 109.47204 * 319.23590 * 18 17 16 37 37 H 1.09005 * 109.49957 * 56.85821 * 23 17 16 38 38 H 1.09007 * 109.49418 * 176.93877 * 23 17 16 39 39 H 1.08998 * 109.63087 * 248.49896 * 24 14 12 40 40 H 1.08997 * 109.63376 * 9.08446 * 24 14 12 41 41 H 1.08996 * 117.49752 * 214.97164 * 25 9 7 42 42 H 1.08997 * 117.49744 * 359.97438 * 25 9 7 43 43 H 1.09000 * 117.49788 * 359.97438 * 26 9 7 44 44 H 1.09001 * 117.50190 * 144.97252 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3752 2.1165 -1.3930 5 1 1.5128 2.6145 0.8180 6 1 3.6022 1.4080 0.5749 7 6 2.0045 -1.1940 0.0005 8 1 1.4815 -2.1194 0.1923 9 6 3.4875 -1.2081 -0.2665 10 6 3.9900 -0.1541 -1.2552 11 7 3.7332 -0.6072 -2.6245 12 6 4.1839 0.1153 -3.6692 13 8 4.7241 1.1879 -3.4786 14 7 4.0359 -0.3510 -4.9250 15 6 4.6197 0.3647 -6.0696 16 6 3.5267 0.5705 -7.1238 17 7 2.9134 -0.7244 -7.4481 18 6 1.9814 -0.5977 -8.5764 19 6 2.7693 -0.5646 -9.8875 20 9 3.6315 -1.6649 -9.9413 21 9 1.8808 -0.6151 -10.9669 22 9 3.5160 0.6167 -9.9531 23 6 2.2454 -1.3059 -6.2761 24 6 3.2858 -1.5886 -5.1871 25 6 4.4111 -1.5858 0.8933 26 6 4.1935 -2.5654 -0.2616 27 1 -0.4849 0.8401 0.0004 28 1 5.0610 -0.0067 -1.1161 29 1 3.4680 0.7867 -1.0799 30 1 3.2389 -1.4273 -2.7793 31 1 5.4319 -0.2252 -6.4946 32 1 4.9990 1.3325 -5.7417 33 1 3.9660 1.0004 -8.0240 34 1 2.7657 1.2455 -6.7323 35 1 1.3009 -1.4492 -8.5829 36 1 1.4090 0.3241 -8.4731 37 1 1.5023 -0.6049 -5.8959 38 1 1.7554 -2.2369 -6.5614 39 1 3.9698 -2.3662 -5.5273 40 1 2.7832 -1.9122 -4.2757 41 1 5.3766 -1.0835 0.9519 42 1 3.9461 -1.8239 1.8500 43 1 3.5853 -3.4483 -0.0648 44 1 5.0156 -2.7077 -0.9631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332179070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:02 Heat of formation + Delta-G solvation = -120.058144 kcal Electronic energy + Delta-G solvation = -30294.870374 eV Core-core repulsion = 25641.353787 eV Total energy + Delta-G solvation = -4653.516586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.32566 -47.90544 -47.73476 -40.28714 -38.48179 -37.10743 -34.82023 -33.56706 -32.31789 -31.27068 -30.26552 -27.38358 -26.15411 -24.98107 -23.83119 -23.10348 -21.73089 -21.27495 -19.59847 -19.25563 -18.77635 -18.71122 -18.06306 -17.67124 -16.58418 -16.04671 -15.88828 -15.55196 -15.28384 -15.13936 -14.71905 -14.65485 -14.55705 -14.23871 -14.17196 -14.00668 -13.96146 -13.90982 -13.53830 -13.40065 -12.98230 -12.78012 -12.51223 -12.22770 -12.13689 -12.05168 -11.58559 -11.36660 -11.32219 -11.00290 -10.66756 -10.49982 -10.08748 -9.83529 -9.52388 -9.37474 -9.10885 -9.03291 -8.61127 -8.47031 -8.09163 -6.27381 -4.22307 2.39703 2.78873 3.17913 3.28922 3.37597 3.39921 3.51886 3.57158 3.72689 4.11955 4.18086 4.29583 4.55432 4.60347 4.73198 4.77964 4.84419 5.02151 5.07369 5.14884 5.28740 5.31305 5.45351 5.58669 5.63706 5.70757 5.83327 5.88432 6.08865 6.14638 6.26603 6.34330 6.42033 6.45366 6.56757 6.64109 6.82362 7.01800 7.09329 7.22713 7.60281 8.33022 8.36524 8.76628 8.95400 9.37229 10.83679 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019138 B = 0.002928 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.689190 B = 9561.711868 C = 9734.745307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.081 3.919 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.300 1.300 6 H -0.265 1.265 7 C -0.489 4.489 8 H 0.080 0.920 9 C -0.007 4.007 10 C 0.167 3.833 11 N -0.722 5.722 12 C 0.704 3.296 13 O -0.598 6.598 14 N -0.637 5.637 15 C 0.139 3.861 16 C 0.024 3.976 17 N -0.532 5.532 18 C 0.008 3.992 19 C 0.458 3.542 20 F -0.172 7.172 21 F -0.186 7.186 22 F -0.184 7.184 23 C 0.043 3.957 24 C 0.117 3.883 25 C -0.198 4.198 26 C -0.187 4.187 27 H 0.267 0.733 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.401 0.599 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.048 0.952 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.486 -3.377 -18.880 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.124 4.124 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.229 1.229 6 H -0.191 1.191 7 C -0.526 4.526 8 H 0.098 0.902 9 C -0.008 4.008 10 C 0.044 3.956 11 N -0.377 5.377 12 C 0.406 3.594 13 O -0.477 6.477 14 N -0.376 5.376 15 C 0.015 3.985 16 C -0.104 4.104 17 N -0.256 5.256 18 C -0.122 4.122 19 C 0.403 3.597 20 F -0.153 7.153 21 F -0.168 7.168 22 F -0.165 7.165 23 C -0.085 4.085 24 C -0.007 4.007 25 C -0.237 4.237 26 C -0.225 4.225 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.238 0.762 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.066 0.934 35 H 0.138 0.862 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.099 -2.807 -18.836 19.715 hybrid contribution -0.447 1.031 -0.084 1.127 sum 4.652 -1.776 -18.920 19.565 Atomic orbital electron populations 1.69906 1.06388 1.27420 1.48404 1.24984 0.94614 0.99131 0.93624 0.86793 0.79689 0.83324 0.77761 1.20536 1.22887 1.19061 1.20310 0.87992 0.95097 1.49158 0.90204 1.19552 0.94618 0.91987 0.94682 1.21262 0.98304 0.96932 0.79066 1.45247 1.59413 1.28007 1.05034 1.15901 0.79586 0.83628 0.80295 1.90872 1.50877 1.21821 1.84153 1.47276 1.58252 1.26899 1.05172 1.21445 0.94339 0.98722 0.83994 1.22944 0.98072 0.89099 1.00299 1.61735 1.31647 1.26051 1.06210 1.23219 0.94314 1.06365 0.88341 1.20520 0.78637 0.73731 0.86763 1.93207 1.71543 1.53814 1.96761 1.93185 1.68465 1.96195 1.58917 1.93125 1.78332 1.48520 1.96565 1.22581 0.95925 1.00336 0.89621 1.21704 0.93828 0.87089 0.98099 1.23130 1.00642 1.05174 0.94730 1.22778 1.02852 0.94682 1.02143 0.92343 0.92837 0.93015 0.76244 0.91000 0.88249 0.88356 0.93352 0.86206 0.89648 0.93105 0.88787 0.90361 0.88992 0.91137 0.89282 0.89716 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.96 55.43 0.77 -24.89 16 2 C 0.08 2.21 5.43 -17.82 -0.10 2.12 16 3 Si 0.89 22.50 24.30 -169.99 -4.13 18.37 16 4 H -0.28 -7.28 6.97 56.52 0.39 -6.88 16 5 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 7 C -0.49 -12.80 9.59 -34.44 -0.33 -13.13 16 8 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 9 C -0.01 -0.16 1.31 -155.66 -0.20 -0.36 16 10 C 0.17 3.70 4.45 -4.04 -0.02 3.68 16 11 N -0.72 -14.01 5.43 -65.22 -0.35 -14.36 16 12 C 0.70 13.53 8.31 -86.92 -0.72 12.80 16 13 O -0.60 -13.69 15.80 5.29 0.08 -13.61 16 14 N -0.64 -9.26 3.01 -178.19 -0.54 -9.80 16 15 C 0.14 1.73 6.61 -3.60 -0.02 1.71 16 16 C 0.02 0.25 5.40 -3.69 -0.02 0.23 16 17 N -0.53 -4.92 4.33 -234.32 -1.01 -5.93 16 18 C 0.01 0.06 5.14 -3.83 -0.02 0.04 16 19 C 0.46 3.94 3.28 37.16 0.12 4.06 16 20 F -0.17 -1.73 17.10 2.25 0.04 -1.69 16 21 F -0.19 -1.64 17.32 2.25 0.04 -1.60 16 22 F -0.18 -1.75 14.87 2.25 0.03 -1.72 16 23 C 0.04 0.40 5.57 -3.70 -0.02 0.38 16 24 C 0.12 1.30 6.54 -3.60 -0.02 1.28 16 25 C -0.20 -3.97 9.88 -26.73 -0.26 -4.24 16 26 C -0.19 -3.51 9.92 -26.73 -0.27 -3.77 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.05 1.15 7.95 -51.93 -0.41 0.74 16 29 H 0.05 1.29 1.63 -51.93 -0.08 1.21 16 30 H 0.40 6.99 6.02 -40.82 -0.25 6.74 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.39 7.04 -51.93 -0.37 1.02 16 33 H 0.10 0.92 5.64 -51.93 -0.29 0.63 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.12 0.64 7.71 -51.93 -0.40 0.24 16 36 H 0.09 0.55 7.95 -51.93 -0.41 0.14 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.66 7.88 -51.93 -0.41 0.25 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 1.06 5.74 -51.93 -0.30 0.76 16 41 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 42 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 43 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 357.15 15.07 5.38 5.38 Total: -1.00 -31.98 357.15 -7.47 -39.45 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.90 Total: 5.60 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -1.89 Total: 4.80 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -1.13 Total: -54.99 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.08 Total: -13.61 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.11 Total: -5.01 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.13 Total: 18.37 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.98 -7.47 -39.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332179070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.608 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds