Wall clock time and date at job start Tue Mar 31 2020 18:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00318 * 2 1 4 4 H 1.48501 * 109.46959 * 275.75169 * 3 2 1 5 5 H 1.48493 * 109.47133 * 35.75288 * 3 2 1 6 6 H 1.48501 * 109.47098 * 155.75447 * 3 2 1 7 7 C 1.37878 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99553 * 348.19831 * 7 2 1 9 9 C 1.50694 * 120.00470 * 168.19244 * 7 2 1 10 10 C 1.53005 * 115.54957 * 326.07517 * 9 7 2 11 11 N 1.46501 * 109.47099 * 280.00396 * 10 9 7 12 12 C 1.34779 * 119.99960 * 185.03949 * 11 10 9 13 13 O 1.21592 * 119.99841 * 355.03393 * 12 11 10 14 14 N 1.34773 * 120.00101 * 175.03204 * 12 11 10 15 15 C 1.47078 * 120.87968 * 185.21076 * 14 12 11 16 16 C 1.53244 * 108.51854 * 231.20763 * 15 14 12 17 17 N 1.46906 * 109.34053 * 306.16854 * 16 15 14 18 18 C 1.46896 * 111.00007 * 187.25368 * 17 16 15 19 19 C 1.53001 * 109.47236 * 79.23622 * 18 17 16 20 20 F 1.39902 * 109.46858 * 52.54949 * 19 18 17 21 21 F 1.39892 * 109.47481 * 172.55196 * 19 18 17 22 22 F 1.39903 * 109.47128 * 292.55412 * 19 18 17 23 23 C 1.46894 * 111.26493 * 63.10446 * 17 16 15 24 24 C 1.47073 * 120.87918 * 5.23287 * 14 12 11 25 25 C 1.53002 * 117.51987 * 111.77429 * 9 7 2 26 26 C 1.52997 * 117.50303 * 180.40548 * 9 7 2 27 27 H 0.97001 * 119.99554 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47039 * 160.00195 * 10 9 7 29 29 H 1.09007 * 109.46933 * 40.00269 * 10 9 7 30 30 H 0.96994 * 119.99964 * 5.03140 * 11 10 9 31 31 H 1.09001 * 109.62726 * 111.50203 * 15 14 12 32 32 H 1.08996 * 109.63200 * 350.91597 * 15 14 12 33 33 H 1.08997 * 109.49086 * 186.21454 * 16 15 14 34 34 H 1.08993 * 109.51789 * 66.14071 * 16 15 14 35 35 H 1.09003 * 109.46863 * 199.22912 * 18 17 16 36 36 H 1.08992 * 109.47204 * 319.23590 * 18 17 16 37 37 H 1.09005 * 109.49957 * 56.85821 * 23 17 16 38 38 H 1.09007 * 109.49418 * 176.93877 * 23 17 16 39 39 H 1.08998 * 109.63087 * 248.49896 * 24 14 12 40 40 H 1.08997 * 109.63376 * 9.08446 * 24 14 12 41 41 H 1.08996 * 117.49752 * 214.97164 * 25 9 7 42 42 H 1.08997 * 117.49744 * 359.97438 * 25 9 7 43 43 H 1.09000 * 117.49788 * 359.97438 * 26 9 7 44 44 H 1.09001 * 117.50190 * 144.97252 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3752 2.1165 -1.3930 5 1 1.5128 2.6145 0.8180 6 1 3.6022 1.4080 0.5749 7 6 2.0045 -1.1940 0.0005 8 1 1.4815 -2.1194 0.1923 9 6 3.4875 -1.2081 -0.2665 10 6 3.9900 -0.1541 -1.2552 11 7 3.7332 -0.6072 -2.6245 12 6 4.1839 0.1153 -3.6692 13 8 4.7241 1.1879 -3.4786 14 7 4.0359 -0.3510 -4.9250 15 6 4.6197 0.3647 -6.0696 16 6 3.5267 0.5705 -7.1238 17 7 2.9134 -0.7244 -7.4481 18 6 1.9814 -0.5977 -8.5764 19 6 2.7693 -0.5646 -9.8875 20 9 3.6315 -1.6649 -9.9413 21 9 1.8808 -0.6151 -10.9669 22 9 3.5160 0.6167 -9.9531 23 6 2.2454 -1.3059 -6.2761 24 6 3.2858 -1.5886 -5.1871 25 6 4.4111 -1.5858 0.8933 26 6 4.1935 -2.5654 -0.2616 27 1 -0.4849 0.8401 0.0004 28 1 5.0610 -0.0067 -1.1161 29 1 3.4680 0.7867 -1.0799 30 1 3.2389 -1.4273 -2.7793 31 1 5.4319 -0.2252 -6.4946 32 1 4.9990 1.3325 -5.7417 33 1 3.9660 1.0004 -8.0240 34 1 2.7657 1.2455 -6.7323 35 1 1.3009 -1.4492 -8.5829 36 1 1.4090 0.3241 -8.4731 37 1 1.5023 -0.6049 -5.8959 38 1 1.7554 -2.2369 -6.5614 39 1 3.9698 -2.3662 -5.5273 40 1 2.7832 -1.9122 -4.2757 41 1 5.3766 -1.0835 0.9519 42 1 3.9461 -1.8239 1.8500 43 1 3.5853 -3.4483 -0.0648 44 1 5.0156 -2.7077 -0.9631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332179070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:02 Heat of formation + Delta-G solvation = -142.456189 kcal Electronic energy + Delta-G solvation = -30295.841626 eV Core-core repulsion = 25641.353787 eV Total energy + Delta-G solvation = -4654.487838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.01738 -48.59674 -48.44673 -41.55998 -39.63035 -38.67171 -35.95466 -35.05752 -34.38069 -32.21092 -31.11798 -28.95570 -27.47585 -26.53783 -24.79176 -23.84495 -23.17225 -22.42969 -21.31019 -20.51793 -19.71391 -19.46782 -19.21152 -18.40648 -18.25356 -17.77341 -17.28090 -16.59068 -16.28791 -16.20752 -15.66260 -15.60794 -15.45591 -15.32848 -15.26864 -15.03106 -14.95994 -14.93260 -14.69020 -14.62670 -14.60310 -14.02294 -13.88920 -13.62311 -13.09557 -12.98389 -12.92544 -12.52754 -12.46474 -12.32123 -12.15555 -12.12914 -11.88655 -11.54633 -11.29192 -11.22554 -10.77106 -10.42550 -10.16343 -9.80599 -9.42487 -8.39987 -6.33309 1.25979 1.33510 1.37705 1.53240 1.76824 2.05112 2.22826 2.43700 2.76095 2.90877 2.98195 3.10423 3.44833 3.49838 3.73410 3.88430 3.90372 3.95260 4.12847 4.17315 4.19859 4.30633 4.37724 4.41061 4.44669 4.45398 4.67808 4.68637 4.76592 4.79388 4.93050 4.98001 4.98749 5.22751 5.41927 5.47662 5.52793 5.56648 5.63733 5.68834 5.91345 6.26434 6.66089 6.94663 7.27147 7.49368 8.74958 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019138 B = 0.002928 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.689190 B = 9561.711868 C = 9734.745307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.300 1.300 5 H -0.305 1.305 6 H -0.252 1.252 7 C -0.476 4.476 8 H 0.053 0.947 9 C -0.038 4.038 10 C 0.173 3.827 11 N -0.720 5.720 12 C 0.698 3.302 13 O -0.642 6.642 14 N -0.630 5.630 15 C 0.136 3.864 16 C 0.033 3.967 17 N -0.534 5.534 18 C 0.010 3.990 19 C 0.459 3.541 20 F -0.181 7.181 21 F -0.187 7.187 22 F -0.191 7.191 23 C 0.047 3.953 24 C 0.111 3.889 25 C -0.191 4.191 26 C -0.155 4.155 27 H 0.266 0.734 28 H 0.060 0.940 29 H 0.024 0.976 30 H 0.409 0.591 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.036 0.964 35 H 0.145 0.855 36 H 0.096 0.904 37 H 0.036 0.964 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.577 -4.967 -20.111 21.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.160 4.160 3 Si 0.776 3.224 4 H -0.229 1.229 5 H -0.234 1.234 6 H -0.177 1.177 7 C -0.513 4.513 8 H 0.071 0.929 9 C -0.039 4.039 10 C 0.049 3.951 11 N -0.376 5.376 12 C 0.400 3.600 13 O -0.524 6.524 14 N -0.368 5.368 15 C 0.013 3.987 16 C -0.095 4.095 17 N -0.258 5.258 18 C -0.119 4.119 19 C 0.404 3.596 20 F -0.162 7.162 21 F -0.169 7.169 22 F -0.173 7.173 23 C -0.080 4.080 24 C -0.012 4.012 25 C -0.230 4.230 26 C -0.192 4.192 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.041 0.959 30 H 0.248 0.752 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.127 0.873 34 H 0.054 0.946 35 H 0.163 0.837 36 H 0.114 0.886 37 H 0.055 0.945 38 H 0.144 0.856 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.196 -4.445 -20.099 21.497 hybrid contribution -0.754 1.423 0.219 1.625 sum 5.441 -3.023 -19.880 20.831 Atomic orbital electron populations 1.69991 1.07568 1.27802 1.51341 1.25455 0.94904 1.01289 0.94302 0.85975 0.79319 0.80821 0.76288 1.22903 1.23433 1.17725 1.20473 0.90219 0.93535 1.47100 0.92876 1.19411 0.92713 0.94974 0.96814 1.21028 0.98133 0.95589 0.80375 1.45123 1.59744 1.28361 1.04362 1.16105 0.79295 0.83129 0.81504 1.90834 1.52787 1.23696 1.85102 1.47366 1.57693 1.27761 1.03939 1.21574 0.95549 0.97885 0.83724 1.22812 0.97204 0.89690 0.99841 1.61687 1.32441 1.25084 1.06599 1.23318 0.93913 1.08140 0.86546 1.20702 0.78454 0.73174 0.87261 1.93191 1.71932 1.54241 1.96833 1.93184 1.68402 1.96165 1.59109 1.93111 1.78610 1.48956 1.96617 1.22586 0.94921 1.01473 0.89054 1.21972 0.94451 0.85982 0.98756 1.23173 1.00485 1.05037 0.94272 1.22818 1.02239 0.92888 1.01248 0.92484 0.92135 0.95915 0.75220 0.89386 0.90297 0.87258 0.94614 0.83684 0.88607 0.94545 0.85589 0.88238 0.89433 0.89128 0.89579 0.89230 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.06 13.96 21.45 0.30 -54.76 16 2 C 0.04 2.23 5.43 84.66 0.46 2.69 16 3 Si 0.94 47.62 24.30 68.60 1.67 49.29 16 4 H -0.30 -16.04 6.97 99.48 0.69 -15.35 16 5 H -0.31 -15.37 7.11 99.48 0.71 -14.66 16 6 H -0.25 -12.00 6.53 99.48 0.65 -11.35 16 7 C -0.48 -24.89 9.59 25.60 0.25 -24.64 16 8 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 9 C -0.04 -1.61 1.31 -52.93 -0.07 -1.68 16 10 C 0.17 7.45 4.45 86.38 0.38 7.83 16 11 N -0.72 -27.28 5.43 -478.51 -2.60 -29.88 16 12 C 0.70 26.54 8.31 179.05 1.49 28.03 16 13 O -0.64 -29.70 15.80 -4.00 -0.06 -29.77 16 14 N -0.63 -17.61 3.01 -835.95 -2.52 -20.12 16 15 C 0.14 3.26 6.61 86.35 0.57 3.83 16 16 C 0.03 0.64 5.40 86.38 0.47 1.10 16 17 N -0.53 -8.49 4.33 -895.25 -3.88 -12.37 16 18 C 0.01 0.12 5.14 86.30 0.44 0.56 16 19 C 0.46 6.87 3.28 71.98 0.24 7.10 16 20 F -0.18 -3.23 17.10 44.97 0.77 -2.46 16 21 F -0.19 -2.91 17.32 44.97 0.78 -2.13 16 22 F -0.19 -3.32 14.87 44.97 0.67 -2.65 16 23 C 0.05 0.76 5.57 86.39 0.48 1.24 16 24 C 0.11 2.23 6.54 86.35 0.56 2.79 16 25 C -0.19 -7.11 9.88 30.59 0.30 -6.80 16 26 C -0.15 -5.28 9.92 30.59 0.30 -4.98 16 27 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 28 H 0.06 2.51 7.95 -2.39 -0.02 2.49 16 29 H 0.02 1.15 1.63 -2.38 0.00 1.15 16 30 H 0.41 13.75 6.02 -92.71 -0.56 13.19 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 2.24 7.04 -2.39 -0.02 2.22 16 33 H 0.11 1.89 5.64 -2.39 -0.01 1.88 16 34 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.15 0.99 7.71 -2.39 -0.02 0.97 16 36 H 0.10 0.99 7.95 -2.39 -0.02 0.97 16 37 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.13 1.26 7.88 -2.38 -0.02 1.24 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.09 1.84 5.74 -2.39 -0.01 1.83 16 41 H 0.09 3.03 8.08 -2.39 -0.02 3.01 16 42 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 43 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 44 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -70.32 357.15 1.43 -68.90 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.42 Total: 18.88 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 5.88 Total: 17.07 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -8.69 Total: -117.13 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.06 Total: -29.77 kcal Atomic # 9 Polarization: -9.46 SS G_CDS: 2.22 Total: -7.24 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.67 Total: 49.29 kcal Total: -70.32 1.43 -68.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332179070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.561 kcal (2) G-P(sol) polarization free energy of solvation -70.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds