Wall clock time and date at job start Tue Mar 31 2020 18:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86795 * 120.00156 * 2 1 4 4 H 1.48499 * 109.47572 * 240.00388 * 3 2 1 5 5 H 1.48507 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47117 * 120.00550 * 3 2 1 7 7 C 1.38952 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99936 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99956 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99700 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99965 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47013 * 186.26704 * 12 10 9 14 14 C 1.46850 * 110.99815 * 190.59658 * 13 12 10 15 15 C 1.53035 * 109.52097 * 174.16111 * 14 13 12 16 16 C 1.53110 * 109.28106 * 59.18085 * 15 14 13 17 17 C 1.53123 * 109.16043 * 302.34528 * 16 15 14 18 18 H 1.09001 * 109.53513 * 297.69481 * 17 16 15 19 19 C 1.52999 * 109.50361 * 177.59393 * 17 16 15 20 20 N 1.46499 * 109.47375 * 65.19383 * 19 17 16 21 21 C 1.34780 * 120.00249 * 179.97438 * 20 19 17 22 22 O 1.21684 * 119.99740 * 0.02562 * 21 20 19 23 23 C 1.46662 * 119.99727 * 180.02562 * 21 20 19 24 24 C 1.36537 * 125.98470 * 179.97438 * 23 21 20 25 25 C 1.40366 * 106.71132 * 179.97438 * 24 23 21 26 26 C 1.35128 * 107.10965 * 0.02562 * 25 24 23 27 27 O 1.33932 * 108.76943 * 0.22750 * 26 25 24 28 28 C 1.46840 * 111.00091 * 66.39203 * 13 12 10 29 29 H 0.97001 * 119.99618 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99661 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47255 * 66.26429 * 12 10 9 32 32 H 1.09005 * 109.46968 * 306.26593 * 12 10 9 33 33 H 1.08995 * 109.46607 * 294.17693 * 14 13 12 34 34 H 1.09000 * 109.46001 * 54.15946 * 14 13 12 35 35 H 1.09004 * 109.50225 * 179.12965 * 15 14 13 36 36 H 1.09002 * 109.50595 * 299.23724 * 15 14 13 37 37 H 1.09002 * 109.52597 * 182.43795 * 16 15 14 38 38 H 1.09003 * 109.52125 * 62.25033 * 16 15 14 39 39 H 1.09002 * 109.47261 * 305.19644 * 19 17 16 40 40 H 1.08999 * 109.47250 * 185.19806 * 19 17 16 41 41 H 0.97002 * 119.99798 * 0.02562 * 20 19 17 42 42 H 1.08000 * 126.64715 * 359.93476 * 24 23 21 43 43 H 1.07999 * 126.44436 * 179.97438 * 25 24 23 44 44 H 1.08001 * 125.61895 * 179.97438 * 26 25 24 45 45 H 1.09003 * 109.46976 * 65.82123 * 28 13 12 46 46 H 1.09008 * 109.46108 * 305.85462 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1021 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1910 -5.9754 0.1502 14 6 1.5324 -7.2647 -0.0958 15 6 2.5754 -8.3843 -0.0733 16 6 3.2728 -8.3982 1.2897 17 6 3.9092 -7.0287 1.5426 18 1 4.6676 -6.8336 0.7843 19 6 4.5572 -7.0146 2.9285 20 7 5.6710 -7.9658 2.9566 21 6 6.3942 -8.1236 4.0830 22 8 6.1216 -7.4763 5.0767 23 6 7.5096 -9.0755 4.1108 24 6 8.3195 -9.3313 5.1799 25 6 9.2430 -10.3028 4.7633 26 6 8.9602 -10.5933 3.4743 27 8 7.9185 -9.8479 3.0831 28 6 2.8275 -5.9484 1.4732 29 1 -0.4849 0.8401 0.0004 30 1 0.3533 -2.3906 -0.0005 31 1 0.7041 -4.9705 -0.9421 32 1 0.5352 -4.8738 0.8272 33 1 0.7881 -7.4461 0.6795 34 1 1.0441 -7.2429 -1.0701 35 1 2.0840 -9.3428 -0.2406 36 1 3.3124 -8.2110 -0.8575 37 1 4.0465 -9.1661 1.2952 38 1 2.5423 -8.6102 2.0705 39 1 3.8182 -7.2982 3.6780 40 1 4.9289 -6.0132 3.1457 41 1 5.8885 -8.4815 2.1644 42 1 8.2613 -8.8741 6.1566 43 1 10.0318 -10.7359 5.3604 44 1 9.4898 -11.3059 2.8593 45 1 2.0771 -6.1359 2.2413 46 1 3.2798 -4.9704 1.6387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338362662.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:55 Heat of formation + Delta-G solvation = -56.931951 kcal Electronic energy + Delta-G solvation = -28308.561357 eV Core-core repulsion = 24199.638869 eV Total energy + Delta-G solvation = -4108.922489 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.00347 -39.90819 -39.09917 -37.69453 -35.46102 -33.94306 -33.46116 -32.89040 -31.49659 -31.18752 -30.11065 -27.48022 -26.26068 -24.68658 -23.36220 -22.89324 -22.11465 -21.46925 -20.60099 -19.71524 -19.14775 -18.74238 -17.83199 -16.68225 -16.63983 -16.20452 -15.97935 -15.51396 -15.23779 -14.86051 -14.58158 -14.45698 -14.16558 -14.04863 -13.76041 -13.45485 -13.42021 -13.34634 -13.18681 -13.01619 -12.70559 -12.42512 -12.14181 -11.80876 -11.48976 -11.39494 -11.06490 -10.98868 -10.71774 -10.60798 -10.42743 -10.42210 -10.33301 -10.27568 -10.18503 -9.44036 -9.37334 -8.98266 -8.41814 -7.95346 -7.84663 -6.39626 -3.80282 0.75261 2.01067 2.35266 2.95038 2.98439 3.21835 3.27357 3.31844 3.93062 3.97512 4.24466 4.34817 4.54546 4.62257 4.71713 4.75345 4.84545 5.10302 5.17568 5.26055 5.27682 5.32725 5.41322 5.46826 5.52020 5.53228 5.57063 5.68235 5.72845 5.78281 5.83273 5.92569 5.95443 5.99158 6.05184 6.13566 6.14891 6.30497 6.40102 6.43903 6.48427 7.23155 7.29327 7.41809 7.57064 7.85895 8.08481 8.64144 9.20331 9.56898 10.08789 10.78055 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.002251 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.325048 B =12437.396549 C =13862.538162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.576 6.576 12 C 0.047 3.953 13 N -0.514 5.514 14 C 0.053 3.947 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.093 4.093 18 H 0.090 0.910 19 C 0.123 3.877 20 N -0.713 5.713 21 C 0.600 3.400 22 O -0.519 6.519 23 C -0.076 4.076 24 C -0.122 4.122 25 C -0.225 4.225 26 C -0.008 4.008 27 O -0.164 6.164 28 C 0.065 3.935 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.405 0.595 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.210 0.790 45 H 0.026 0.974 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.705 -23.566 4.789 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.228 3.772 11 O -0.460 6.460 12 C -0.084 4.084 13 N -0.238 5.238 14 C -0.075 4.075 15 C -0.152 4.152 16 C -0.154 4.154 17 C -0.112 4.112 18 H 0.108 0.892 19 C 0.000 4.000 20 N -0.364 5.364 21 C 0.385 3.615 22 O -0.397 6.397 23 C -0.128 4.128 24 C -0.143 4.143 25 C -0.245 4.245 26 C -0.078 4.078 27 O -0.059 6.059 28 C -0.064 4.064 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.240 0.760 42 H 0.178 0.822 43 H 0.174 0.826 44 H 0.227 0.773 45 H 0.044 0.956 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.364 -22.830 4.844 25.536 hybrid contribution -0.613 0.411 0.328 0.807 sum 9.751 -22.419 5.172 24.989 Atomic orbital electron populations 1.69606 1.05915 1.28212 1.50646 1.25257 0.95635 0.99703 0.97387 0.85928 0.78763 0.80514 0.79070 1.19913 1.21013 1.19915 1.19640 0.93308 0.82219 1.47595 0.87984 1.41878 1.09178 1.04605 1.64511 1.19755 0.88452 0.84523 0.84481 1.90505 1.13614 1.86936 1.54961 1.21847 0.93671 0.91234 1.01685 1.61430 1.31165 1.01102 1.30097 1.22122 0.95251 0.89422 1.00682 1.21547 0.98619 0.97388 0.97620 1.21676 0.99607 0.96423 0.97683 1.21386 0.98579 0.95433 0.95831 0.89185 1.21490 0.87670 0.93099 0.97753 1.45913 1.33015 1.43482 1.13995 1.16544 0.80200 0.80892 0.83816 1.90904 1.68416 1.46239 1.34145 1.22161 1.02030 1.00670 0.87983 1.22005 0.94405 0.98128 0.99771 1.21881 1.03710 1.02476 0.96384 1.24426 0.89663 0.97212 0.96519 1.84067 1.40618 1.43424 1.37830 1.22061 0.95303 1.00460 0.88529 0.91862 0.77526 0.89252 0.93582 0.95280 0.90826 0.91716 0.90915 0.92189 0.92101 0.91063 0.90374 0.75959 0.82190 0.82572 0.77312 0.95557 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 9 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 10 C 0.44 10.34 7.31 -10.99 -0.08 10.25 16 11 O -0.58 -15.31 14.29 5.54 0.08 -15.23 16 12 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 13 N -0.51 -8.27 4.35 -236.11 -1.03 -9.30 16 14 C 0.05 0.66 5.46 -3.83 -0.02 0.64 16 15 C -0.11 -1.17 6.09 -26.66 -0.16 -1.34 16 16 C -0.12 -1.17 5.13 -26.61 -0.14 -1.30 16 17 C -0.09 -1.15 2.39 -90.54 -0.22 -1.37 16 18 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 19 C 0.12 1.51 5.07 -4.04 -0.02 1.49 16 20 N -0.71 -7.90 5.30 -61.63 -0.33 -8.23 16 21 C 0.60 7.71 7.79 -12.86 -0.10 7.61 16 22 O -0.52 -8.40 16.86 5.20 0.09 -8.31 16 23 C -0.08 -0.83 7.13 -36.80 -0.26 -1.09 16 24 C -0.12 -1.19 10.62 -39.40 -0.42 -1.60 16 25 C -0.23 -1.59 10.88 -39.89 -0.43 -2.02 16 26 C -0.01 -0.05 12.08 29.63 0.36 0.31 16 27 O -0.16 -1.48 10.40 5.01 0.05 -1.43 16 28 C 0.06 1.01 4.40 -3.84 -0.02 0.99 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 31 H 0.09 1.43 7.98 -51.93 -0.41 1.01 16 32 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.85 8.01 -51.93 -0.42 0.44 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.51 7.27 -51.93 -0.38 0.13 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.41 3.67 7.44 -40.82 -0.30 3.36 16 42 H 0.16 1.46 8.06 -52.49 -0.42 1.03 16 43 H 0.16 0.70 8.06 -52.49 -0.42 0.27 16 44 H 0.21 0.42 8.06 -52.49 -0.42 0.00 16 45 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.10 1.94 6.06 -51.92 -0.31 1.62 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -33.51 382.91 -8.23 -41.74 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -6.73 Total: 11.60 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -1.78 Total: 5.41 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.69 Total: -55.74 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: 0.22 Total: -24.97 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.51 -8.23 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338362662.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.189 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds