Wall clock time and date at job start Tue Mar 31 2020 18:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86795 * 120.00156 * 2 1 4 4 H 1.48499 * 109.47572 * 240.00388 * 3 2 1 5 5 H 1.48507 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47117 * 120.00550 * 3 2 1 7 7 C 1.38952 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99936 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99956 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99700 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99965 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47013 * 186.26704 * 12 10 9 14 14 C 1.46850 * 110.99815 * 190.59658 * 13 12 10 15 15 C 1.53035 * 109.52097 * 174.16111 * 14 13 12 16 16 C 1.53110 * 109.28106 * 59.18085 * 15 14 13 17 17 C 1.53123 * 109.16043 * 302.34528 * 16 15 14 18 18 H 1.09001 * 109.53513 * 297.69481 * 17 16 15 19 19 C 1.52999 * 109.50361 * 177.59393 * 17 16 15 20 20 N 1.46499 * 109.47375 * 65.19383 * 19 17 16 21 21 C 1.34780 * 120.00249 * 179.97438 * 20 19 17 22 22 O 1.21684 * 119.99740 * 0.02562 * 21 20 19 23 23 C 1.46662 * 119.99727 * 180.02562 * 21 20 19 24 24 C 1.36537 * 125.98470 * 179.97438 * 23 21 20 25 25 C 1.40366 * 106.71132 * 179.97438 * 24 23 21 26 26 C 1.35128 * 107.10965 * 0.02562 * 25 24 23 27 27 O 1.33932 * 108.76943 * 0.22750 * 26 25 24 28 28 C 1.46840 * 111.00091 * 66.39203 * 13 12 10 29 29 H 0.97001 * 119.99618 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99661 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47255 * 66.26429 * 12 10 9 32 32 H 1.09005 * 109.46968 * 306.26593 * 12 10 9 33 33 H 1.08995 * 109.46607 * 294.17693 * 14 13 12 34 34 H 1.09000 * 109.46001 * 54.15946 * 14 13 12 35 35 H 1.09004 * 109.50225 * 179.12965 * 15 14 13 36 36 H 1.09002 * 109.50595 * 299.23724 * 15 14 13 37 37 H 1.09002 * 109.52597 * 182.43795 * 16 15 14 38 38 H 1.09003 * 109.52125 * 62.25033 * 16 15 14 39 39 H 1.09002 * 109.47261 * 305.19644 * 19 17 16 40 40 H 1.08999 * 109.47250 * 185.19806 * 19 17 16 41 41 H 0.97002 * 119.99798 * 0.02562 * 20 19 17 42 42 H 1.08000 * 126.64715 * 359.93476 * 24 23 21 43 43 H 1.07999 * 126.44436 * 179.97438 * 25 24 23 44 44 H 1.08001 * 125.61895 * 179.97438 * 26 25 24 45 45 H 1.09003 * 109.46976 * 65.82123 * 28 13 12 46 46 H 1.09008 * 109.46108 * 305.85462 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1021 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1910 -5.9754 0.1502 14 6 1.5324 -7.2647 -0.0958 15 6 2.5754 -8.3843 -0.0733 16 6 3.2728 -8.3982 1.2897 17 6 3.9092 -7.0287 1.5426 18 1 4.6676 -6.8336 0.7843 19 6 4.5572 -7.0146 2.9285 20 7 5.6710 -7.9658 2.9566 21 6 6.3942 -8.1236 4.0830 22 8 6.1216 -7.4763 5.0767 23 6 7.5096 -9.0755 4.1108 24 6 8.3195 -9.3313 5.1799 25 6 9.2430 -10.3028 4.7633 26 6 8.9602 -10.5933 3.4743 27 8 7.9185 -9.8479 3.0831 28 6 2.8275 -5.9484 1.4732 29 1 -0.4849 0.8401 0.0004 30 1 0.3533 -2.3906 -0.0005 31 1 0.7041 -4.9705 -0.9421 32 1 0.5352 -4.8738 0.8272 33 1 0.7881 -7.4461 0.6795 34 1 1.0441 -7.2429 -1.0701 35 1 2.0840 -9.3428 -0.2406 36 1 3.3124 -8.2110 -0.8575 37 1 4.0465 -9.1661 1.2952 38 1 2.5423 -8.6102 2.0705 39 1 3.8182 -7.2982 3.6780 40 1 4.9289 -6.0132 3.1457 41 1 5.8885 -8.4815 2.1644 42 1 8.2613 -8.8741 6.1566 43 1 10.0318 -10.7359 5.3604 44 1 9.4898 -11.3059 2.8593 45 1 2.0771 -6.1359 2.2413 46 1 3.2798 -4.9704 1.6387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338362662.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:54 Heat of formation + Delta-G solvation = -82.279678 kcal Electronic energy + Delta-G solvation = -28309.660517 eV Core-core repulsion = 24199.638869 eV Total energy + Delta-G solvation = -4110.021649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.64970 -41.00554 -40.42393 -39.27050 -36.60537 -35.89293 -34.24705 -33.93154 -33.21857 -32.47706 -30.84830 -28.99039 -27.23311 -26.49956 -24.33231 -24.00218 -22.77299 -22.47643 -21.44746 -20.98962 -20.67009 -19.86696 -19.55586 -17.73560 -17.42919 -17.38605 -17.17659 -16.67840 -16.52609 -16.26384 -16.12381 -15.72238 -15.39131 -15.33723 -14.99501 -14.86444 -14.57099 -14.12664 -13.95044 -13.81487 -13.77641 -13.57303 -13.48522 -13.37085 -13.07714 -12.89099 -12.63516 -12.43158 -12.13598 -12.06400 -11.64439 -11.62043 -11.52905 -11.32316 -11.27261 -11.06299 -10.37590 -10.24845 -9.98969 -9.65947 -9.17303 -8.45975 -5.94249 0.00006 1.38999 1.40468 1.41958 1.51327 1.61805 2.04946 2.07188 2.14154 2.28618 2.79033 3.20870 3.36098 3.64176 3.75420 3.82625 3.90469 3.94768 4.11285 4.21874 4.26837 4.32452 4.38000 4.46804 4.49322 4.57280 4.59069 4.62848 4.72805 4.83107 4.90079 4.91700 4.95008 5.04627 5.09556 5.11300 5.21584 5.28982 5.38976 5.41015 5.49743 5.81549 5.91220 6.10221 6.27536 6.36252 6.61964 6.92411 7.14024 7.58140 8.14299 8.71229 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.002251 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.325048 B =12437.396549 C =13862.538162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.991 3.009 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.331 4.331 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.440 3.560 11 O -0.613 6.613 12 C 0.058 3.942 13 N -0.532 5.532 14 C 0.050 3.950 15 C -0.109 4.109 16 C -0.110 4.110 17 C -0.080 4.080 18 H 0.076 0.924 19 C 0.131 3.869 20 N -0.701 5.701 21 C 0.597 3.403 22 O -0.565 6.565 23 C -0.110 4.110 24 C -0.127 4.127 25 C -0.235 4.235 26 C 0.013 3.987 27 O -0.170 6.170 28 C 0.067 3.933 29 H 0.277 0.723 30 H 0.395 0.605 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.417 0.583 42 H 0.156 0.844 43 H 0.184 0.816 44 H 0.257 0.743 45 H 0.035 0.965 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.118 -26.310 4.083 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.460 4.460 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.228 3.772 11 O -0.499 6.499 12 C -0.073 4.073 13 N -0.257 5.257 14 C -0.077 4.077 15 C -0.147 4.147 16 C -0.147 4.147 17 C -0.099 4.099 18 H 0.094 0.906 19 C 0.007 3.993 20 N -0.352 5.352 21 C 0.385 3.615 22 O -0.446 6.446 23 C -0.162 4.162 24 C -0.148 4.148 25 C -0.254 4.254 26 C -0.056 4.056 27 O -0.065 6.065 28 C -0.062 4.062 29 H 0.086 0.914 30 H 0.229 0.771 31 H 0.130 0.870 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.254 0.746 42 H 0.174 0.826 43 H 0.201 0.799 44 H 0.273 0.727 45 H 0.053 0.947 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.755 -25.610 4.106 28.079 hybrid contribution -0.645 1.154 0.541 1.429 sum 10.110 -24.457 4.647 26.869 Atomic orbital electron populations 1.69668 1.06751 1.29259 1.50493 1.26021 0.96566 1.02349 0.96459 0.85018 0.77782 0.76826 0.78885 1.19671 1.19434 1.19920 1.19592 0.92607 0.84035 1.49791 0.90445 1.41949 1.09277 1.04721 1.65424 1.20822 0.88362 0.85936 0.82107 1.90480 1.15649 1.87811 1.55933 1.21727 0.93391 0.88648 1.03530 1.61418 1.31622 1.02388 1.30228 1.22289 0.96045 0.87758 1.01601 1.21558 0.98053 0.97878 0.97195 1.21656 1.00248 0.94827 0.97978 1.21219 0.97340 0.96234 0.95116 0.90555 1.21294 0.87994 0.92115 0.97899 1.45764 1.32349 1.42951 1.14163 1.16833 0.80529 0.80750 0.83360 1.90866 1.69913 1.48232 1.35633 1.21731 1.02816 1.02381 0.89241 1.22272 0.94677 0.98391 0.99425 1.22227 1.03967 1.01990 0.97175 1.25426 0.87710 0.95741 0.96729 1.84058 1.41576 1.43556 1.37314 1.21933 0.96181 0.99159 0.88887 0.91358 0.77085 0.86986 0.91869 0.94096 0.89734 0.88700 0.91646 0.89999 0.91397 0.90888 0.93137 0.74588 0.82620 0.79891 0.72707 0.94715 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.41 13.05 21.66 0.28 -50.12 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.99 43.86 29.55 68.60 2.03 45.89 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.58 -30.03 5.29 -306.98 -1.62 -31.66 16 10 C 0.44 21.24 7.31 87.66 0.64 21.88 16 11 O -0.61 -34.19 14.29 -3.08 -0.04 -34.23 16 12 C 0.06 2.03 5.45 85.55 0.47 2.50 16 13 N -0.53 -16.84 4.35 -900.93 -3.92 -20.75 16 14 C 0.05 1.11 5.46 86.32 0.47 1.58 16 15 C -0.11 -1.92 6.09 30.64 0.19 -1.73 16 16 C -0.11 -1.94 5.13 30.67 0.16 -1.79 16 17 C -0.08 -1.98 2.39 -10.74 -0.03 -2.01 16 18 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 19 C 0.13 3.36 5.07 86.38 0.44 3.80 16 20 N -0.70 -15.81 5.30 -467.11 -2.48 -18.29 16 21 C 0.60 15.98 7.79 86.44 0.67 16.65 16 22 O -0.57 -19.45 16.86 -4.30 -0.07 -19.52 16 23 C -0.11 -2.38 7.13 24.07 0.17 -2.21 16 24 C -0.13 -2.40 10.62 22.39 0.24 -2.16 16 25 C -0.23 -2.72 10.88 22.07 0.24 -2.48 16 26 C 0.01 0.12 12.08 67.10 0.81 0.93 16 27 O -0.17 -2.75 10.40 -5.00 -0.05 -2.80 16 28 C 0.07 2.14 4.40 86.33 0.38 2.52 16 29 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 31 H 0.11 3.41 7.98 -2.39 -0.02 3.39 16 32 H 0.06 2.00 8.12 -2.38 -0.02 1.98 16 33 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 1.70 8.01 -2.39 -0.02 1.68 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.14 7.27 -2.39 -0.02 1.12 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.42 7.27 7.44 -92.71 -0.69 6.58 16 42 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 43 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 44 H 0.26 -0.32 8.06 -2.91 -0.02 -0.34 16 45 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.05 2.21 6.06 -2.38 -0.01 2.20 16 Total: -1.00 -76.99 382.91 -0.15 -77.14 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.41 Total: 35.44 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 6.13 Total: 18.90 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -7.73 Total: -120.82 kcal Atomic # 8 Polarization: -56.38 SS G_CDS: -0.17 Total: -56.55 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -76.99 -0.15 -77.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338362662.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.135 kcal (2) G-P(sol) polarization free energy of solvation -76.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds