Wall clock time and date at job start Tue Mar 31 2020 18:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99485 * 2 1 4 4 H 1.48494 * 109.47177 * 269.99875 * 3 2 1 5 5 H 1.48505 * 109.47036 * 30.00159 * 3 2 1 6 6 H 1.48499 * 109.46776 * 149.99648 * 3 2 1 7 7 C 1.38941 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00369 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46846 * 110.99738 * 66.04780 * 13 12 10 15 15 C 1.53044 * 109.51968 * 185.83487 * 14 13 12 16 16 C 1.53109 * 109.28150 * 300.81833 * 15 14 13 17 17 C 1.53126 * 109.16214 * 57.65538 * 16 15 14 18 18 H 1.08998 * 109.50161 * 62.32007 * 17 16 15 19 19 C 1.52997 * 109.50719 * 182.40340 * 17 16 15 20 20 N 1.46498 * 109.47082 * 295.00039 * 19 17 16 21 21 C 1.34774 * 119.99774 * 179.97438 * 20 19 17 22 22 O 1.21691 * 120.00427 * 359.97438 * 21 20 19 23 23 C 1.46661 * 119.99816 * 180.02562 * 21 20 19 24 24 C 1.36547 * 125.98748 * 180.02562 * 23 21 20 25 25 C 1.40362 * 106.70840 * 179.97438 * 24 23 21 26 26 C 1.35129 * 107.11373 * 359.97438 * 25 24 23 27 27 O 1.33927 * 108.77066 * 359.77521 * 26 25 24 28 28 C 1.46854 * 110.99940 * 190.25481 * 13 12 10 29 29 H 0.96993 * 120.00255 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 1.08999 * 109.46435 * 305.84790 * 14 13 12 34 34 H 1.09001 * 109.46401 * 65.83402 * 14 13 12 35 35 H 1.09001 * 109.50195 * 60.76714 * 15 14 13 36 36 H 1.09007 * 109.50114 * 180.87863 * 15 14 13 37 37 H 1.08999 * 109.52964 * 177.55910 * 16 15 14 38 38 H 1.09003 * 109.52573 * 297.69192 * 16 15 14 39 39 H 1.09001 * 109.46986 * 54.99721 * 19 17 16 40 40 H 1.08993 * 109.46948 * 174.99706 * 19 17 16 41 41 H 0.97005 * 120.00374 * 0.02562 * 20 19 17 42 42 H 1.07999 * 126.64495 * 359.97438 * 24 23 21 43 43 H 1.08000 * 126.44259 * 180.02562 * 25 24 23 44 44 H 1.08010 * 125.61340 * 180.02562 * 26 25 24 45 45 H 1.09005 * 109.46009 * 294.17618 * 28 13 12 46 46 H 1.08998 * 109.46194 * 54.14497 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4691 -2.1386 0.0005 9 7 3.3799 -1.2031 0.0011 10 6 4.0539 -2.3703 0.0011 11 8 3.4475 -3.4208 0.0011 12 6 5.5609 -2.3701 0.0022 13 7 6.0507 -3.7551 0.0026 14 6 5.7023 -4.4367 -1.2505 15 6 6.0977 -5.9123 -1.1571 16 6 7.6032 -6.0169 -0.8989 17 6 7.9468 -5.2580 0.3860 18 1 7.4330 -5.7192 1.2294 19 6 9.4580 -5.3068 0.6196 20 7 9.8696 -6.6910 0.8657 21 6 11.1660 -6.9773 1.0981 22 8 11.9946 -6.0861 1.1031 23 6 11.5781 -8.3632 1.3440 24 6 12.8514 -8.7896 1.5921 25 6 12.7842 -10.1806 1.7671 26 6 11.4892 -10.5377 1.6207 27 8 10.7648 -9.4393 1.3711 28 6 7.4978 -3.8015 0.2478 29 1 -0.4850 0.8400 -0.0004 30 1 3.8649 -0.3630 0.0007 31 1 5.9249 -1.8559 -0.8873 32 1 5.9236 -1.8566 0.8927 33 1 4.6284 -4.3586 -1.4202 34 1 6.2358 -3.9697 -2.0785 35 1 5.5543 -6.3834 -0.3380 36 1 5.8533 -6.4145 -2.0932 37 1 7.8820 -7.0648 -0.7885 38 1 8.1477 -5.5814 -1.7368 39 1 9.9743 -4.9254 -0.2614 40 1 9.7120 -4.6930 1.4837 41 1 9.2094 -7.4016 0.8607 42 1 13.7383 -8.1755 1.6436 43 1 13.6117 -10.8411 1.9798 44 1 11.1015 -11.5430 1.6968 45 1 8.0227 -3.3373 -0.5872 46 1 7.7280 -3.2618 1.1664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338362663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:58 Heat of formation + Delta-G solvation = -49.597962 kcal Electronic energy + Delta-G solvation = -28036.382162 eV Core-core repulsion = 23927.777699 eV Total energy + Delta-G solvation = -4108.604463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.10097 -40.05270 -39.23814 -37.91306 -35.57228 -34.00021 -33.54492 -33.00560 -31.71202 -31.52756 -30.21236 -27.72561 -26.32879 -24.62596 -23.45881 -22.80446 -22.21488 -21.63008 -20.71907 -19.78253 -19.35886 -18.88106 -18.20974 -16.78846 -16.73922 -16.45626 -15.91844 -15.63311 -15.28789 -15.00141 -14.91143 -14.61020 -14.16637 -14.13486 -13.69695 -13.56535 -13.45057 -13.40207 -13.23106 -13.10013 -12.78788 -12.57239 -12.35748 -12.12951 -11.83446 -11.55617 -11.15711 -11.12737 -10.73338 -10.69219 -10.59055 -10.51705 -10.38438 -10.37045 -9.97211 -9.54197 -9.52135 -9.09604 -8.55354 -8.17761 -7.94580 -6.30892 -3.82239 0.63980 1.91456 2.24433 2.81201 2.83077 3.03020 3.06878 3.15349 3.74233 3.88120 4.10515 4.23883 4.45100 4.51664 4.57357 4.66848 4.72225 4.79506 5.16435 5.18096 5.21356 5.26400 5.31734 5.32401 5.39386 5.43261 5.48830 5.54868 5.60113 5.66380 5.77180 5.84090 5.85832 5.92289 5.93272 5.96776 6.00780 6.12005 6.36641 6.41167 6.49452 7.07325 7.19589 7.34480 7.59125 7.69848 8.14917 8.60707 8.95627 9.42934 9.84028 10.82224 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031253 B = 0.001828 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.692392 B =15310.313717 C =15801.987403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.592 5.592 10 C 0.453 3.547 11 O -0.559 6.559 12 C 0.044 3.956 13 N -0.514 5.514 14 C 0.050 3.950 15 C -0.113 4.113 16 C -0.116 4.116 17 C -0.096 4.096 18 H 0.090 0.910 19 C 0.124 3.876 20 N -0.714 5.714 21 C 0.602 3.398 22 O -0.521 6.521 23 C -0.080 4.080 24 C -0.121 4.121 25 C -0.226 4.226 26 C -0.005 4.005 27 O -0.164 6.164 28 C 0.064 3.936 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.022 0.978 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.407 0.593 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.211 0.789 45 H 0.034 0.966 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.073 -16.693 0.943 30.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.239 3.761 11 O -0.440 6.440 12 C -0.088 4.088 13 N -0.238 5.238 14 C -0.077 4.077 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.115 4.115 18 H 0.108 0.892 19 C 0.001 3.999 20 N -0.365 5.365 21 C 0.388 3.612 22 O -0.399 6.399 23 C -0.132 4.132 24 C -0.141 4.141 25 C -0.245 4.245 26 C -0.075 4.075 27 O -0.059 6.059 28 C -0.065 4.065 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.040 0.960 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.242 0.758 42 H 0.178 0.822 43 H 0.175 0.825 44 H 0.228 0.772 45 H 0.052 0.948 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 24.455 -16.824 1.268 29.710 hybrid contribution 0.897 1.384 -0.548 1.738 sum 25.352 -15.439 0.720 29.692 Atomic orbital electron populations 1.69618 1.05634 1.27474 1.49461 1.25031 0.95482 0.97955 0.97684 0.86680 0.79823 0.84095 0.78841 1.19693 1.20186 1.19469 1.19421 0.79226 0.96605 1.48019 0.86276 1.42220 1.07527 1.06157 1.67213 1.19644 0.88085 0.84526 0.83883 1.90526 1.69374 1.30749 1.53384 1.21869 0.95546 0.89731 1.01621 1.61445 1.11635 1.14578 1.36161 1.22291 1.03553 0.93399 0.88490 1.21537 0.94802 0.96636 1.02089 1.21679 0.97286 0.99587 0.96796 1.21411 0.93137 0.97190 0.99760 0.89205 1.21475 0.94828 0.81616 1.02029 1.45907 1.08162 1.10952 1.71523 1.16533 0.82860 0.84617 0.77210 1.90896 1.51758 1.45168 1.52117 1.22115 0.90236 0.87337 1.13499 1.22004 0.97036 0.95165 0.99912 1.21891 0.97882 0.95626 1.09129 1.24459 0.90860 0.90625 1.01577 1.84072 1.37903 1.15015 1.68906 1.21984 0.88471 0.95120 1.00899 0.91636 0.79735 0.93367 0.89198 0.87812 0.96008 0.90762 0.91685 0.92183 0.92127 0.90964 0.90737 0.75753 0.82202 0.82523 0.77231 0.94817 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.96 55.50 0.77 -24.89 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.30 27.74 -169.99 -4.71 14.58 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 7 C -0.30 -8.53 10.16 -14.94 -0.15 -8.68 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 N -0.59 -13.94 5.09 -10.96 -0.06 -14.00 16 10 C 0.45 10.10 7.46 -10.98 -0.08 10.02 16 11 O -0.56 -14.55 13.92 5.55 0.08 -14.48 16 12 C 0.04 0.72 5.45 -4.97 -0.03 0.69 16 13 N -0.51 -7.87 4.39 -236.10 -1.04 -8.91 16 14 C 0.05 0.76 5.11 -3.83 -0.02 0.74 16 15 C -0.11 -1.37 6.09 -26.65 -0.16 -1.53 16 16 C -0.12 -1.11 5.13 -26.61 -0.14 -1.25 16 17 C -0.10 -0.93 2.39 -90.54 -0.22 -1.15 16 18 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 19 C 0.12 1.13 5.07 -4.04 -0.02 1.11 16 20 N -0.71 -6.37 5.30 -61.63 -0.33 -6.70 16 21 C 0.60 6.54 7.79 -12.86 -0.10 6.44 16 22 O -0.52 -7.24 16.86 5.20 0.09 -7.15 16 23 C -0.08 -0.75 7.13 -36.79 -0.26 -1.02 16 24 C -0.12 -1.00 10.62 -39.39 -0.42 -1.42 16 25 C -0.23 -1.35 10.87 -39.89 -0.43 -1.79 16 26 C -0.01 -0.03 12.08 29.63 0.36 0.33 16 27 O -0.16 -1.30 10.40 5.00 0.05 -1.24 16 28 C 0.06 0.73 4.74 -3.83 -0.02 0.72 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 31 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 32 H 0.09 1.30 7.98 -51.93 -0.41 0.88 16 33 H 0.10 1.97 5.80 -51.93 -0.30 1.67 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.49 7.25 -51.93 -0.38 0.11 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.41 3.01 7.42 -40.82 -0.30 2.70 16 42 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.21 0.26 8.06 -52.48 -0.42 -0.16 16 45 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -34.51 379.34 -7.89 -42.40 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -6.67 Total: 10.44 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -1.79 Total: 4.24 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.65 Total: -54.50 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.22 Total: -22.87 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.51 -7.89 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338362663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.201 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds