Wall clock time and date at job start Tue Mar 31 2020 18:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00347 * 2 1 4 4 H 1.48499 * 109.46936 * 240.00127 * 3 2 1 5 5 H 1.48508 * 109.46827 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47486 * 119.99406 * 3 2 1 7 7 C 1.37887 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99499 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99935 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46810 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.34781 * 120.00365 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99608 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99792 * 180.02562 * 12 11 10 15 15 C 1.46509 * 119.99632 * 179.97438 * 14 12 11 16 16 C 1.53034 * 109.45864 * 204.99540 * 15 14 12 17 17 C 1.53194 * 109.31062 * 178.62252 * 16 15 14 18 18 N 1.46932 * 108.77329 * 54.64125 * 17 16 15 19 19 C 1.34774 * 120.63387 * 126.36446 * 18 17 16 20 20 O 1.21698 * 119.99812 * 3.75809 * 19 18 17 21 21 C 1.46653 * 120.00225 * 183.48079 * 19 18 17 22 22 C 1.36546 * 125.98787 * 173.30845 * 21 19 18 23 23 C 1.40369 * 106.70643 * 179.97438 * 22 21 19 24 24 C 1.35129 * 107.11314 * 0.02562 * 23 22 21 25 25 O 1.33932 * 108.77151 * 359.73393 * 24 23 22 26 26 C 1.46925 * 118.73634 * 306.64154 * 18 17 16 27 27 C 1.52761 * 109.00957 * 53.30544 * 26 18 17 28 28 H 0.97003 * 120.00082 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47148 * 60.00152 * 9 7 2 30 30 H 1.08991 * 109.47356 * 299.99959 * 9 7 2 31 31 H 1.08992 * 109.47376 * 60.00390 * 10 9 7 32 32 H 1.09007 * 109.47176 * 299.99662 * 10 9 7 33 33 H 0.97009 * 120.00074 * 359.97438 * 11 10 9 34 34 H 0.96996 * 120.00483 * 359.97438 * 14 12 11 35 35 H 1.09004 * 109.45396 * 324.97155 * 15 14 12 36 36 H 1.09005 * 109.49544 * 58.68204 * 16 15 14 37 37 H 1.08992 * 109.50203 * 298.57682 * 16 15 14 38 38 H 1.08996 * 109.58971 * 294.85243 * 17 16 15 39 39 H 1.09007 * 109.70393 * 174.49056 * 17 16 15 40 40 H 1.07998 * 126.64426 * 359.97438 * 22 21 19 41 41 H 1.08000 * 126.44073 * 180.02562 * 23 22 21 42 42 H 1.08009 * 125.61344 * 180.02562 * 24 23 22 43 43 H 1.09003 * 109.58858 * 173.14225 * 26 18 17 44 44 H 1.09006 * 109.58627 * 293.56904 * 26 18 17 45 45 H 1.09004 * 109.56394 * 185.55357 * 27 26 18 46 46 H 1.09001 * 109.35641 * 65.50294 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.1865 -6.0981 0.0003 13 8 3.4024 -6.0981 0.0007 14 7 1.5125 -7.2652 -0.0008 15 6 2.2450 -8.5340 -0.0009 16 6 1.3678 -9.6291 -0.6118 17 6 2.1492 -10.9464 -0.6418 18 7 2.6275 -11.2434 0.7154 19 6 2.3582 -12.4305 1.2940 20 8 1.7726 -13.2939 0.6673 21 6 2.7762 -12.6840 2.6766 22 6 2.4586 -13.7830 3.4222 23 6 3.0659 -13.6094 4.6758 24 6 3.7187 -12.4268 4.6410 25 8 3.5463 -11.8747 3.4330 26 6 3.3998 -10.2194 1.4321 27 6 2.6091 -8.9124 1.4366 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8902 31 1 2.8718 -3.6044 0.8905 32 1 2.8718 -3.6044 -0.8895 33 1 0.5426 -4.9308 0.0000 34 1 0.5426 -7.2652 -0.0015 35 1 3.1559 -8.4273 -0.5901 36 1 1.0897 -9.3480 -1.6276 37 1 0.4683 -9.7533 -0.0089 38 1 3.0000 -10.8513 -1.3164 39 1 1.4993 -11.7516 -0.9845 40 1 1.8569 -14.6230 3.1081 41 1 3.0199 -14.2926 5.5109 42 1 4.2897 -11.9995 5.4522 43 1 3.5727 -10.5438 2.4583 44 1 4.3547 -10.0638 0.9300 45 1 3.2145 -8.1211 1.8789 46 1 1.6979 -9.0433 2.0202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343611974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:12 Heat of formation + Delta-G solvation = -44.378853 kcal Electronic energy + Delta-G solvation = -28159.313786 eV Core-core repulsion = 24050.935641 eV Total energy + Delta-G solvation = -4108.378146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.18555 -40.49680 -39.55882 -37.76263 -35.16097 -34.49699 -33.54314 -32.87613 -31.98333 -31.31838 -30.09579 -29.23514 -25.80841 -24.54150 -23.91258 -22.97591 -22.20038 -21.24621 -20.95381 -20.52045 -20.14844 -18.25436 -17.84882 -17.22774 -16.79687 -16.42411 -16.28598 -15.96519 -15.35202 -15.14515 -14.68915 -14.54810 -14.34388 -14.25582 -14.06711 -13.69228 -13.55976 -13.48147 -13.14568 -13.11288 -12.97238 -12.53866 -12.28777 -12.01792 -11.59722 -11.22205 -11.20148 -11.01221 -10.88456 -10.65512 -10.60498 -10.49850 -10.31522 -9.97056 -9.57206 -9.32123 -9.26518 -9.05781 -8.96920 -8.49294 -8.26967 -6.09696 -4.12414 0.64211 1.93473 2.13676 2.63501 2.76466 3.01021 3.30909 3.34727 3.38320 3.55404 3.99781 4.36767 4.39243 4.43446 4.54254 4.58565 4.60067 4.69807 4.85443 4.92505 5.05490 5.10047 5.27315 5.28465 5.33866 5.37423 5.44038 5.52040 5.54765 5.70237 5.84896 5.89312 5.98048 6.16363 6.29031 6.38582 6.41100 6.59149 6.76567 6.89387 6.98521 7.22082 7.55839 7.61528 7.62477 7.89241 8.25067 8.41769 8.91817 8.98076 9.52225 11.01880 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023667 B = 0.001820 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.786090 B =15380.034176 C =16052.987523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.699 3.301 13 O -0.598 6.598 14 N -0.750 5.750 15 C 0.166 3.834 16 C -0.142 4.142 17 C 0.117 3.883 18 N -0.602 5.602 19 C 0.603 3.397 20 O -0.525 6.525 21 C -0.079 4.079 22 C -0.118 4.118 23 C -0.224 4.224 24 C -0.013 4.013 25 O -0.156 6.156 26 C 0.093 3.907 27 C -0.145 4.145 28 H 0.262 0.738 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.393 0.607 34 H 0.394 0.606 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.210 0.790 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.312 -28.349 6.573 29.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.392 5.392 12 C 0.399 3.601 13 O -0.477 6.477 14 N -0.405 5.405 15 C 0.060 3.940 16 C -0.181 4.181 17 C -0.006 4.006 18 N -0.334 5.334 19 C 0.392 3.608 20 O -0.403 6.403 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.243 4.243 24 C -0.082 4.082 25 O -0.052 6.052 26 C -0.029 4.029 27 C -0.185 4.185 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.226 0.774 34 H 0.227 0.773 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.177 0.823 41 H 0.174 0.826 42 H 0.226 0.774 43 H 0.131 0.869 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.108 -28.333 6.085 29.269 hybrid contribution -0.558 0.929 0.319 1.130 sum 3.550 -27.404 6.404 28.365 Atomic orbital electron populations 1.69944 1.06086 1.26968 1.50328 1.25000 0.94904 0.99411 0.95007 0.86563 0.79504 0.82628 0.78779 1.20114 1.21265 1.20109 1.21013 0.93227 0.90368 1.51413 0.92272 1.19319 0.94255 0.91090 0.97789 1.21587 0.95626 0.80423 1.00611 1.45558 1.09866 1.05365 1.78410 1.16079 0.85680 0.80494 0.77877 1.90882 1.11710 1.86637 1.58437 1.45201 1.09351 1.04438 1.81550 1.20682 0.95767 0.81736 0.95853 1.22226 0.99112 0.94092 1.02679 1.21642 0.99326 0.97401 0.82192 1.48070 1.53830 1.14768 1.16737 1.16698 0.79008 0.82250 0.82880 1.90874 1.42786 1.44501 1.62166 1.22046 1.03380 0.93786 0.93843 1.21984 1.00611 0.98129 0.93105 1.21870 1.03708 0.99372 0.99397 1.24642 1.01646 0.94739 0.87155 1.84217 1.55383 1.43100 1.22546 1.22286 0.94387 0.87271 0.99000 1.22285 1.01221 0.96934 0.98016 0.92806 0.95993 0.95996 0.92806 0.92799 0.77402 0.77272 0.89144 0.89461 0.90784 0.90502 0.88197 0.82259 0.82598 0.77374 0.86893 0.90416 0.89426 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 10 C 0.14 2.98 5.61 -4.04 -0.02 2.95 16 11 N -0.74 -12.72 5.56 -65.23 -0.36 -13.09 16 12 C 0.70 11.66 8.53 -86.92 -0.74 10.92 16 13 O -0.60 -12.24 16.01 5.29 0.08 -12.15 16 14 N -0.75 -8.84 5.08 -58.63 -0.30 -9.13 16 15 C 0.17 1.70 2.42 -67.89 -0.16 1.53 16 16 C -0.14 -1.10 5.55 -26.61 -0.15 -1.25 16 17 C 0.12 0.95 6.43 -3.71 -0.02 0.92 16 18 N -0.60 -5.61 2.98 -174.57 -0.52 -6.13 16 19 C 0.60 6.61 7.66 -12.87 -0.10 6.51 16 20 O -0.52 -7.05 16.30 5.19 0.08 -6.96 16 21 C -0.08 -0.76 6.85 -36.80 -0.25 -1.01 16 22 C -0.12 -0.98 10.63 -39.39 -0.42 -1.40 16 23 C -0.22 -1.38 10.88 -39.89 -0.43 -1.82 16 24 C -0.01 -0.07 12.08 29.63 0.36 0.29 16 25 O -0.16 -1.26 7.07 4.99 0.04 -1.22 16 26 C 0.09 0.80 6.28 -3.93 -0.02 0.77 16 27 C -0.14 -1.42 5.63 -26.84 -0.15 -1.57 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.39 5.82 8.49 -40.82 -0.35 5.47 16 34 H 0.39 3.66 8.62 -40.82 -0.35 3.30 16 35 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.85 7.02 -51.93 -0.36 0.49 16 40 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.16 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.21 0.38 8.06 -52.48 -0.42 -0.04 16 43 H 0.11 0.94 3.77 -55.37 -0.21 0.74 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 382.45 15.07 5.76 5.76 Total: -1.00 -34.59 382.45 -8.87 -43.46 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.70 Total: 4.59 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -2.67 Total: 3.86 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.44 Total: -53.62 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: 0.20 Total: -20.34 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.59 -8.87 -43.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343611974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.916 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds