Wall clock time and date at job start Tue Mar 31 2020 18:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00347 * 2 1 4 4 H 1.48499 * 109.46936 * 240.00127 * 3 2 1 5 5 H 1.48508 * 109.46827 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47486 * 119.99406 * 3 2 1 7 7 C 1.37887 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99499 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99935 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46810 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47151 * 180.02562 * 10 9 7 12 12 C 1.34781 * 120.00365 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99608 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99792 * 180.02562 * 12 11 10 15 15 C 1.46509 * 119.99632 * 179.97438 * 14 12 11 16 16 C 1.53034 * 109.45864 * 204.99540 * 15 14 12 17 17 C 1.53194 * 109.31062 * 178.62252 * 16 15 14 18 18 N 1.46932 * 108.77329 * 54.64125 * 17 16 15 19 19 C 1.34774 * 120.63387 * 126.36446 * 18 17 16 20 20 O 1.21698 * 119.99812 * 3.75809 * 19 18 17 21 21 C 1.46653 * 120.00225 * 183.48079 * 19 18 17 22 22 C 1.36546 * 125.98787 * 173.30845 * 21 19 18 23 23 C 1.40369 * 106.70643 * 179.97438 * 22 21 19 24 24 C 1.35129 * 107.11314 * 0.02562 * 23 22 21 25 25 O 1.33932 * 108.77151 * 359.73393 * 24 23 22 26 26 C 1.46925 * 118.73634 * 306.64154 * 18 17 16 27 27 C 1.52761 * 109.00957 * 53.30544 * 26 18 17 28 28 H 0.97003 * 120.00082 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47148 * 60.00152 * 9 7 2 30 30 H 1.08991 * 109.47356 * 299.99959 * 9 7 2 31 31 H 1.08992 * 109.47376 * 60.00390 * 10 9 7 32 32 H 1.09007 * 109.47176 * 299.99662 * 10 9 7 33 33 H 0.97009 * 120.00074 * 359.97438 * 11 10 9 34 34 H 0.96996 * 120.00483 * 359.97438 * 14 12 11 35 35 H 1.09004 * 109.45396 * 324.97155 * 15 14 12 36 36 H 1.09005 * 109.49544 * 58.68204 * 16 15 14 37 37 H 1.08992 * 109.50203 * 298.57682 * 16 15 14 38 38 H 1.08996 * 109.58971 * 294.85243 * 17 16 15 39 39 H 1.09007 * 109.70393 * 174.49056 * 17 16 15 40 40 H 1.07998 * 126.64426 * 359.97438 * 22 21 19 41 41 H 1.08000 * 126.44073 * 180.02562 * 23 22 21 42 42 H 1.08009 * 125.61344 * 180.02562 * 24 23 22 43 43 H 1.09003 * 109.58858 * 173.14225 * 26 18 17 44 44 H 1.09006 * 109.58627 * 293.56904 * 26 18 17 45 45 H 1.09004 * 109.56394 * 185.55357 * 27 26 18 46 46 H 1.09001 * 109.35641 * 65.50294 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.1865 -6.0981 0.0003 13 8 3.4024 -6.0981 0.0007 14 7 1.5125 -7.2652 -0.0008 15 6 2.2450 -8.5340 -0.0009 16 6 1.3678 -9.6291 -0.6118 17 6 2.1492 -10.9464 -0.6418 18 7 2.6275 -11.2434 0.7154 19 6 2.3582 -12.4305 1.2940 20 8 1.7726 -13.2939 0.6673 21 6 2.7762 -12.6840 2.6766 22 6 2.4586 -13.7830 3.4222 23 6 3.0659 -13.6094 4.6758 24 6 3.7187 -12.4268 4.6410 25 8 3.5463 -11.8747 3.4330 26 6 3.3998 -10.2194 1.4321 27 6 2.6091 -8.9124 1.4366 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8902 31 1 2.8718 -3.6044 0.8905 32 1 2.8718 -3.6044 -0.8895 33 1 0.5426 -4.9308 0.0000 34 1 0.5426 -7.2652 -0.0015 35 1 3.1559 -8.4273 -0.5901 36 1 1.0897 -9.3480 -1.6276 37 1 0.4683 -9.7533 -0.0089 38 1 3.0000 -10.8513 -1.3164 39 1 1.4993 -11.7516 -0.9845 40 1 1.8569 -14.6230 3.1081 41 1 3.0199 -14.2926 5.5109 42 1 4.2897 -11.9995 5.4522 43 1 3.5727 -10.5438 2.4583 44 1 4.3547 -10.0638 0.9300 45 1 3.2145 -8.1211 1.8789 46 1 1.6979 -9.0433 2.0202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343611974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:11 Heat of formation + Delta-G solvation = -68.769960 kcal Electronic energy + Delta-G solvation = -28160.371464 eV Core-core repulsion = 24050.935641 eV Total energy + Delta-G solvation = -4109.435823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.74671 -41.42285 -40.70075 -38.70428 -36.63295 -35.72520 -34.80023 -34.11560 -32.85678 -32.30686 -31.13223 -30.51352 -27.04497 -26.01805 -24.66363 -23.80294 -22.85708 -22.73710 -21.90145 -21.80675 -20.88418 -19.35592 -18.75184 -18.40428 -17.96807 -17.42755 -17.15863 -16.94917 -16.59334 -16.48907 -16.01654 -15.62638 -15.42969 -15.29392 -15.14901 -14.81371 -14.65104 -14.27102 -14.14040 -14.05554 -13.97127 -13.60497 -13.25661 -13.19692 -12.92223 -12.82453 -12.52506 -12.28726 -12.23738 -11.98689 -11.70599 -11.65455 -11.49198 -11.41783 -11.17190 -11.05194 -10.58791 -10.28841 -10.02363 -9.70963 -9.58310 -8.22758 -6.32894 0.00613 1.42211 1.42922 1.45213 1.52048 1.52938 1.75015 1.97361 2.09303 2.20463 2.42374 3.12038 3.33785 3.38617 3.67710 3.78236 3.95556 3.97461 4.05255 4.11434 4.23865 4.33719 4.41952 4.49292 4.54636 4.60991 4.72208 4.76298 4.78666 4.85152 4.88946 4.92078 5.01007 5.13474 5.16599 5.34087 5.36385 5.48957 5.53384 5.56651 5.61366 5.80604 5.85508 6.07568 6.17095 6.18798 6.80286 6.84501 7.15807 7.36299 7.63488 8.88815 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023667 B = 0.001820 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.786090 B =15380.034176 C =16052.987523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.161 3.839 11 N -0.735 5.735 12 C 0.699 3.301 13 O -0.636 6.636 14 N -0.729 5.729 15 C 0.163 3.837 16 C -0.129 4.129 17 C 0.114 3.886 18 N -0.599 5.599 19 C 0.600 3.400 20 O -0.560 6.560 21 C -0.111 4.111 22 C -0.122 4.122 23 C -0.232 4.232 24 C 0.001 3.999 25 O -0.164 6.164 26 C 0.098 3.902 27 C -0.137 4.137 28 H 0.265 0.735 29 H 0.008 0.992 30 H 0.008 0.992 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.406 0.594 34 H 0.410 0.590 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.159 0.841 41 H 0.181 0.819 42 H 0.249 0.751 43 H 0.121 0.879 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 -28.744 7.555 29.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.014 4.014 10 C 0.037 3.963 11 N -0.389 5.389 12 C 0.399 3.601 13 O -0.518 6.518 14 N -0.385 5.385 15 C 0.058 3.942 16 C -0.167 4.167 17 C -0.008 4.008 18 N -0.331 5.331 19 C 0.389 3.611 20 O -0.441 6.441 21 C -0.162 4.162 22 C -0.143 4.143 23 C -0.251 4.251 24 C -0.068 4.068 25 O -0.061 6.061 26 C -0.024 4.024 27 C -0.176 4.176 28 H 0.074 0.926 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.241 0.759 34 H 0.246 0.754 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.177 0.823 41 H 0.198 0.802 42 H 0.265 0.735 43 H 0.138 0.862 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.533 -28.758 7.065 29.958 hybrid contribution -0.694 0.969 0.089 1.195 sum 3.839 -27.789 7.154 28.951 Atomic orbital electron populations 1.70050 1.07517 1.28015 1.50994 1.25874 0.95808 1.03087 0.94471 0.85503 0.78295 0.78148 0.79130 1.19380 1.20670 1.19306 1.21445 0.93620 0.91909 1.51525 0.92246 1.19125 0.94260 0.91714 0.96306 1.21047 0.94549 0.81130 0.99567 1.45244 1.10379 1.04513 1.78804 1.16155 0.85203 0.81194 0.77537 1.90859 1.13550 1.87254 1.60105 1.45036 1.10165 1.03435 1.79839 1.20821 0.95644 0.81477 0.96240 1.22126 0.98555 0.92657 1.03376 1.21732 0.99778 0.97333 0.81934 1.48126 1.53447 1.14444 1.17033 1.16912 0.78558 0.82159 0.83422 1.90840 1.44569 1.45518 1.63220 1.21857 1.05508 0.94955 0.93851 1.22242 1.00243 0.97705 0.94075 1.22195 1.03500 1.00199 0.99198 1.25492 1.00333 0.94268 0.86700 1.84164 1.55269 1.43225 1.23396 1.22263 0.94138 0.86423 0.99572 1.22168 1.01177 0.96845 0.97443 0.92584 0.97363 0.97346 0.93823 0.93880 0.75867 0.75404 0.90727 0.88036 0.90132 0.89519 0.88465 0.82315 0.80164 0.73494 0.86234 0.90056 0.91328 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.01 13.29 21.45 0.28 -53.72 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.55 -30.36 9.11 25.60 0.23 -30.12 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.02 1.17 5.09 29.85 0.15 1.33 16 10 C 0.16 6.91 5.61 86.38 0.48 7.40 16 11 N -0.73 -25.03 5.56 -478.54 -2.66 -27.69 16 12 C 0.70 22.95 8.53 179.05 1.53 24.47 16 13 O -0.64 -26.07 16.01 -3.99 -0.06 -26.14 16 14 N -0.73 -16.26 5.08 -457.67 -2.33 -18.59 16 15 C 0.16 3.18 2.42 45.01 0.11 3.29 16 16 C -0.13 -1.78 5.55 30.67 0.17 -1.61 16 17 C 0.11 1.76 6.43 86.36 0.56 2.31 16 18 N -0.60 -10.87 2.98 -824.44 -2.46 -13.32 16 19 C 0.60 13.17 7.66 86.44 0.66 13.84 16 20 O -0.56 -15.38 16.30 -4.34 -0.07 -15.45 16 21 C -0.11 -2.07 6.85 24.07 0.16 -1.91 16 22 C -0.12 -1.96 10.63 22.39 0.24 -1.72 16 23 C -0.23 -2.36 10.88 22.07 0.24 -2.12 16 24 C 0.00 0.00 12.08 67.10 0.81 0.81 16 25 O -0.16 -2.41 7.07 -5.06 -0.04 -2.44 16 26 C 0.10 1.62 6.28 86.22 0.54 2.16 16 27 C -0.14 -2.57 5.63 30.53 0.17 -2.40 16 28 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.41 11.69 8.49 -92.70 -0.79 10.90 16 34 H 0.41 6.78 8.62 -92.71 -0.80 5.98 16 35 H 0.07 1.75 7.58 -2.39 -0.02 1.74 16 36 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.10 1.61 7.02 -2.38 -0.02 1.60 16 40 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 41 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 42 H 0.25 -0.09 8.06 -2.91 -0.02 -0.12 16 43 H 0.12 1.89 3.77 -56.83 -0.21 1.67 16 44 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -75.29 382.45 0.45 -74.84 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -0.77 Total: 20.59 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 6.52 Total: 16.54 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -7.16 Total: -113.32 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -0.17 Total: -44.03 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -75.29 0.45 -74.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343611974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.073 kcal (2) G-P(sol) polarization free energy of solvation -75.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds