Wall clock time and date at job start Tue Mar 31 2020 18:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86802 * 120.00362 * 2 1 4 4 H 1.48498 * 109.47054 * 269.99986 * 3 2 1 5 5 H 1.48502 * 109.46841 * 30.00045 * 3 2 1 6 6 H 1.48498 * 109.47090 * 149.99610 * 3 2 1 7 7 C 1.38951 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99890 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00446 * 0.02562 * 7 2 1 10 10 C 1.34769 * 120.00107 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00254 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99843 * 179.97438 * 10 9 7 13 13 N 1.46502 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34776 * 120.00189 * 180.02562 * 13 12 10 15 15 O 1.21584 * 119.99861 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00425 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00522 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47442 * 180.02562 * 17 16 14 19 19 H 1.09001 * 109.47166 * 59.99206 * 18 17 16 20 20 O 1.42902 * 109.46684 * 300.00117 * 18 17 16 21 21 C 1.52992 * 109.47448 * 179.97438 * 18 17 16 22 22 C 1.52997 * 109.47482 * 184.99813 * 21 18 17 23 23 C 1.50701 * 109.47212 * 179.97438 * 22 21 18 24 24 C 1.38233 * 120.00099 * 269.72808 * 23 22 21 25 25 C 1.38239 * 119.99655 * 179.76882 * 24 23 22 26 26 C 1.38230 * 120.00228 * 0.50243 * 25 24 23 27 27 C 1.38238 * 119.99995 * 359.75228 * 26 25 24 28 28 C 1.38238 * 120.00072 * 359.97438 * 27 26 25 29 29 H 0.97000 * 119.99557 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99771 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47201 * 59.99917 * 12 10 9 32 32 H 1.08998 * 109.47088 * 299.99775 * 12 10 9 33 33 H 0.97002 * 119.99754 * 359.97438 * 13 12 10 34 34 H 0.97002 * 119.99518 * 359.97438 * 16 14 13 35 35 H 1.09000 * 109.46874 * 59.99847 * 17 16 14 36 36 H 1.09007 * 109.46588 * 299.99839 * 17 16 14 37 37 H 0.96702 * 114.00205 * 299.99242 * 20 18 17 38 38 H 1.09002 * 109.47103 * 64.99566 * 21 18 17 39 39 H 1.08998 * 109.46862 * 305.00378 * 21 18 17 40 40 H 1.09002 * 109.47153 * 59.99783 * 22 21 18 41 41 H 1.09001 * 109.46832 * 299.99974 * 22 21 18 42 42 H 1.08003 * 119.99927 * 359.97438 * 24 23 22 43 43 H 1.08000 * 119.99431 * 180.23215 * 25 24 23 44 44 H 1.07997 * 120.00220 * 179.73036 * 26 25 24 45 45 H 1.08002 * 119.99952 * 179.97438 * 27 26 25 46 46 H 1.07991 * 120.00062 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5578 0.0016 11 8 3.2100 -3.5579 0.0030 12 6 1.2435 -4.8629 0.0022 13 7 2.1954 -5.9765 0.0039 14 6 1.7461 -7.2472 0.0042 15 8 0.5508 -7.4693 0.0034 16 7 2.6219 -8.2717 0.0052 17 6 2.1335 -9.6529 0.0061 18 6 3.3234 -10.6146 0.0079 19 1 3.9284 -10.4425 0.8981 20 8 4.1182 -10.3910 -1.1585 21 6 2.8134 -12.0570 0.0094 22 6 3.9981 -13.0168 0.1369 23 6 3.4957 -14.4375 0.1390 24 6 3.1720 -15.0544 1.3330 25 6 2.7065 -16.3561 1.3344 26 6 2.5747 -17.0443 0.1429 27 6 2.9034 -16.4292 -1.0506 28 6 3.3634 -15.1256 -1.0527 29 1 -0.4849 0.8401 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6172 -4.9212 -0.8880 32 1 0.6165 -4.9200 0.8920 33 1 3.1491 -5.7993 0.0041 34 1 3.5755 -8.0944 0.0054 35 1 1.5283 -9.8248 -0.8840 36 1 1.5276 -9.8234 0.8961 37 1 3.6433 -10.5263 -1.9900 38 1 2.2832 -12.2559 -0.9220 39 1 2.1362 -12.2020 0.8510 40 1 4.5283 -12.8178 1.0682 41 1 4.6753 -12.8717 -0.7048 42 1 3.2795 -14.5182 2.2643 43 1 2.4501 -16.8367 2.2670 44 1 2.2152 -18.0627 0.1445 45 1 2.8007 -16.9671 -1.9815 46 1 3.6206 -14.6453 -1.9850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358279178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:04 Heat of formation + Delta-G solvation = -109.434362 kcal Electronic energy + Delta-G solvation = -26697.499435 eV Core-core repulsion = 22586.300271 eV Total energy + Delta-G solvation = -4111.199164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.01317 -39.68365 -38.46118 -37.93600 -34.49841 -34.32560 -34.18022 -33.61815 -31.37443 -31.27939 -30.93086 -28.51244 -26.98529 -24.67819 -23.86924 -22.96932 -22.03439 -21.30906 -20.57922 -19.56554 -18.42139 -17.98964 -17.17888 -16.98063 -16.60977 -15.85346 -15.68704 -15.62032 -15.39767 -15.22545 -14.71865 -14.34913 -14.28420 -14.14267 -13.83525 -13.81989 -13.49882 -13.44179 -13.42237 -13.01208 -12.61840 -12.36577 -12.16140 -11.85408 -11.63262 -11.61885 -11.49142 -11.22391 -11.16525 -11.11438 -10.46191 -10.44825 -10.30867 -10.03162 -9.62230 -9.31801 -9.17442 -9.07066 -8.60825 -8.58706 -8.08516 -6.50118 -3.92063 0.95478 1.00393 2.78829 3.12738 3.23043 3.28546 3.38060 3.40681 3.76850 3.96908 4.11081 4.18969 4.39335 4.41341 4.51494 4.61979 4.63744 4.72094 4.84283 4.91995 4.92762 5.07072 5.14258 5.16362 5.18736 5.30526 5.41742 5.50563 5.61178 5.65242 5.76486 5.80725 5.93077 6.02214 6.07401 6.09929 6.12677 6.24745 6.47976 6.61562 6.77197 7.11312 7.25425 7.47333 7.93935 8.25652 8.46842 8.80608 9.06144 9.41102 9.89131 10.66825 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.044710 B = 0.001379 C = 0.001363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.109340 B =20298.709476 C =20542.534613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.597 6.597 12 C 0.129 3.871 13 N -0.724 5.724 14 C 0.704 3.296 15 O -0.601 6.601 16 N -0.745 5.745 17 C 0.109 3.891 18 C 0.096 3.904 19 H 0.107 0.893 20 O -0.557 6.557 21 C -0.142 4.142 22 C -0.077 4.077 23 C -0.080 4.080 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.119 4.119 28 C -0.118 4.118 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.407 0.593 34 H 0.401 0.599 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.377 0.623 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.831 -31.219 -0.112 31.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.484 6.484 12 C 0.000 4.000 13 N -0.381 5.381 14 C 0.403 3.597 15 O -0.480 6.480 16 N -0.402 5.402 17 C -0.016 4.016 18 C 0.036 3.964 19 H 0.124 0.876 20 O -0.362 6.362 21 C -0.180 4.180 22 C -0.114 4.114 23 C -0.080 4.080 24 C -0.137 4.137 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.137 4.137 28 C -0.136 4.136 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.245 0.755 34 H 0.236 0.764 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.225 0.775 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.834 -31.079 0.343 31.454 hybrid contribution 0.042 0.812 -0.360 0.889 sum 4.875 -30.266 -0.017 30.656 Atomic orbital electron populations 1.69616 1.06009 1.28489 1.49381 1.25317 0.95655 0.99899 0.96809 0.85815 0.79226 0.80518 0.78475 1.20280 1.20810 1.19331 1.19733 0.93466 0.82025 1.48250 0.87690 1.41781 1.09482 1.04438 1.62711 1.19770 0.88304 0.85023 0.85482 1.90492 1.13751 1.86862 1.57301 1.20779 0.91220 0.84874 1.03097 1.44768 1.11268 1.03313 1.78776 1.15861 0.85159 0.80630 0.78012 1.90901 1.14123 1.84346 1.58636 1.44891 1.09374 1.04673 1.81219 1.21841 0.96337 0.80411 1.03031 1.22227 0.91929 0.92442 0.89803 0.87551 1.86597 1.41181 1.92505 1.15935 1.22195 0.98268 0.93819 1.03721 1.20548 0.97435 0.89830 1.03631 1.19951 0.98827 0.96053 0.93208 1.21102 0.99658 0.95171 0.97739 1.21171 0.99478 0.94869 0.98158 1.21162 1.00615 1.00005 0.92750 1.21173 0.99188 0.95215 0.98124 1.21091 1.00057 0.94719 0.97723 0.91612 0.77022 0.90053 0.90051 0.75543 0.76445 0.91454 0.90851 0.77514 0.90968 0.90384 0.90832 0.90099 0.86051 0.86129 0.86237 0.86139 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.95 13.05 55.50 0.72 -23.23 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.31 -8.33 9.68 -14.93 -0.14 -8.48 16 8 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.70 5.29 -10.96 -0.06 -13.76 16 10 C 0.43 9.92 7.85 -10.99 -0.09 9.83 16 11 O -0.60 -15.38 15.24 5.55 0.08 -15.30 16 12 C 0.13 2.43 6.15 -5.19 -0.03 2.40 16 13 N -0.72 -12.37 5.53 -66.42 -0.37 -12.74 16 14 C 0.70 11.52 8.57 -86.92 -0.74 10.77 16 15 O -0.60 -11.82 16.34 5.29 0.09 -11.73 16 16 N -0.74 -8.84 5.45 -65.23 -0.36 -9.20 16 17 C 0.11 1.02 5.34 -4.04 -0.02 1.00 16 18 C 0.10 0.63 3.05 -26.74 -0.08 0.55 16 19 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 20 O -0.56 -4.05 12.62 -35.23 -0.44 -4.50 16 21 C -0.14 -0.79 4.88 -26.74 -0.13 -0.92 16 22 C -0.08 -0.45 5.24 -27.88 -0.15 -0.59 16 23 C -0.08 -0.55 5.13 -104.62 -0.54 -1.09 16 24 C -0.12 -0.80 9.70 -39.58 -0.38 -1.19 16 25 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 26 C -0.13 -0.81 10.05 -39.58 -0.40 -1.21 16 27 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 28 C -0.12 -0.79 9.70 -39.58 -0.38 -1.18 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 30 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.41 6.80 7.45 -40.82 -0.30 6.49 16 34 H 0.40 4.15 8.36 -40.82 -0.34 3.81 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.38 1.81 9.05 45.56 0.41 2.22 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 41 H 0.08 0.49 7.77 -51.93 -0.40 0.08 16 42 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 43 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 46 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 396.69 15.07 5.98 5.98 Total: -1.00 -33.54 396.69 -9.32 -42.86 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -5.96 Total: 17.89 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -3.98 Total: 8.16 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.06 Total: -58.92 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.27 Total: -31.53 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.54 -9.32 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358279178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.572 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds