Wall clock time and date at job start Tue Mar 31 2020 18:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86802 * 120.00362 * 2 1 4 4 H 1.48498 * 109.47054 * 269.99986 * 3 2 1 5 5 H 1.48502 * 109.46841 * 30.00045 * 3 2 1 6 6 H 1.48498 * 109.47090 * 149.99610 * 3 2 1 7 7 C 1.38951 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99890 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00446 * 0.02562 * 7 2 1 10 10 C 1.34769 * 120.00107 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00254 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99843 * 179.97438 * 10 9 7 13 13 N 1.46502 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34776 * 120.00189 * 180.02562 * 13 12 10 15 15 O 1.21584 * 119.99861 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00425 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00522 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47442 * 180.02562 * 17 16 14 19 19 H 1.09001 * 109.47166 * 59.99206 * 18 17 16 20 20 O 1.42902 * 109.46684 * 300.00117 * 18 17 16 21 21 C 1.52992 * 109.47448 * 179.97438 * 18 17 16 22 22 C 1.52997 * 109.47482 * 184.99813 * 21 18 17 23 23 C 1.50701 * 109.47212 * 179.97438 * 22 21 18 24 24 C 1.38233 * 120.00099 * 269.72808 * 23 22 21 25 25 C 1.38239 * 119.99655 * 179.76882 * 24 23 22 26 26 C 1.38230 * 120.00228 * 0.50243 * 25 24 23 27 27 C 1.38238 * 119.99995 * 359.75228 * 26 25 24 28 28 C 1.38238 * 120.00072 * 359.97438 * 27 26 25 29 29 H 0.97000 * 119.99557 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99771 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47201 * 59.99917 * 12 10 9 32 32 H 1.08998 * 109.47088 * 299.99775 * 12 10 9 33 33 H 0.97002 * 119.99754 * 359.97438 * 13 12 10 34 34 H 0.97002 * 119.99518 * 359.97438 * 16 14 13 35 35 H 1.09000 * 109.46874 * 59.99847 * 17 16 14 36 36 H 1.09007 * 109.46588 * 299.99839 * 17 16 14 37 37 H 0.96702 * 114.00205 * 299.99242 * 20 18 17 38 38 H 1.09002 * 109.47103 * 64.99566 * 21 18 17 39 39 H 1.08998 * 109.46862 * 305.00378 * 21 18 17 40 40 H 1.09002 * 109.47153 * 59.99783 * 22 21 18 41 41 H 1.09001 * 109.46832 * 299.99974 * 22 21 18 42 42 H 1.08003 * 119.99927 * 359.97438 * 24 23 22 43 43 H 1.08000 * 119.99431 * 180.23215 * 25 24 23 44 44 H 1.07997 * 120.00220 * 179.73036 * 26 25 24 45 45 H 1.08002 * 119.99952 * 179.97438 * 27 26 25 46 46 H 1.07991 * 120.00062 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5578 0.0016 11 8 3.2100 -3.5579 0.0030 12 6 1.2435 -4.8629 0.0022 13 7 2.1954 -5.9765 0.0039 14 6 1.7461 -7.2472 0.0042 15 8 0.5508 -7.4693 0.0034 16 7 2.6219 -8.2717 0.0052 17 6 2.1335 -9.6529 0.0061 18 6 3.3234 -10.6146 0.0079 19 1 3.9284 -10.4425 0.8981 20 8 4.1182 -10.3910 -1.1585 21 6 2.8134 -12.0570 0.0094 22 6 3.9981 -13.0168 0.1369 23 6 3.4957 -14.4375 0.1390 24 6 3.1720 -15.0544 1.3330 25 6 2.7065 -16.3561 1.3344 26 6 2.5747 -17.0443 0.1429 27 6 2.9034 -16.4292 -1.0506 28 6 3.3634 -15.1256 -1.0527 29 1 -0.4849 0.8401 -0.0004 30 1 0.3533 -2.3906 0.0005 31 1 0.6172 -4.9212 -0.8880 32 1 0.6165 -4.9200 0.8920 33 1 3.1491 -5.7993 0.0041 34 1 3.5755 -8.0944 0.0054 35 1 1.5283 -9.8248 -0.8840 36 1 1.5276 -9.8234 0.8961 37 1 3.6433 -10.5263 -1.9900 38 1 2.2832 -12.2559 -0.9220 39 1 2.1362 -12.2020 0.8510 40 1 4.5283 -12.8178 1.0682 41 1 4.6753 -12.8717 -0.7048 42 1 3.2795 -14.5182 2.2643 43 1 2.4501 -16.8367 2.2670 44 1 2.2152 -18.0627 0.1445 45 1 2.8007 -16.9671 -1.9815 46 1 3.6206 -14.6453 -1.9850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358279178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:04 Heat of formation + Delta-G solvation = -134.858528 kcal Electronic energy + Delta-G solvation = -26698.601910 eV Core-core repulsion = 22586.300271 eV Total energy + Delta-G solvation = -4112.301639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.23595 -40.27184 -40.01520 -38.83037 -36.24399 -35.32080 -35.25330 -34.76614 -33.36224 -31.72949 -31.56516 -29.63553 -28.16129 -26.33934 -24.71930 -23.42456 -22.63892 -22.03795 -21.57893 -21.35132 -20.10276 -19.56867 -17.89769 -17.61738 -17.41058 -17.31238 -16.80853 -16.68351 -16.47528 -16.09205 -15.99909 -15.86568 -15.56393 -15.25312 -15.05141 -14.70879 -14.33444 -14.11460 -14.01032 -13.93398 -13.67913 -13.53605 -13.52614 -13.18606 -12.89152 -12.85103 -12.44652 -12.11932 -12.07064 -11.95604 -11.76629 -11.61051 -11.56082 -11.49072 -10.97533 -10.54596 -10.43465 -10.09264 -9.80696 -9.78875 -9.54449 -8.50105 -6.00314 0.48328 0.53229 1.37352 1.43362 1.54834 1.62799 1.90786 2.12122 2.29604 2.89672 3.04840 3.17261 3.29064 3.55811 3.64204 3.87724 3.96266 4.11235 4.19559 4.22446 4.29152 4.36281 4.39147 4.43828 4.47195 4.57386 4.66257 4.69784 4.73324 4.84961 4.91820 5.15683 5.19427 5.27234 5.31765 5.35391 5.39604 5.48022 5.61730 5.66740 5.77843 5.91979 5.96393 6.17172 6.49211 6.81033 7.03650 7.04520 7.43686 7.53973 7.95645 8.66818 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.044710 B = 0.001379 C = 0.001363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.109340 B =20298.709476 C =20542.534613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.725 5.725 14 C 0.703 3.297 15 O -0.634 6.634 16 N -0.728 5.728 17 C 0.106 3.894 18 C 0.111 3.889 19 H 0.111 0.889 20 O -0.567 6.567 21 C -0.133 4.133 22 C -0.071 4.071 23 C -0.090 4.090 24 C -0.133 4.133 25 C -0.130 4.130 26 C -0.138 4.138 27 C -0.130 4.130 28 C -0.131 4.131 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.410 0.590 34 H 0.411 0.589 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.388 0.612 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.204 -31.911 -0.156 32.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.104 0.896 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.512 6.512 12 C 0.014 3.986 13 N -0.382 5.382 14 C 0.402 3.598 15 O -0.516 6.516 16 N -0.384 5.384 17 C -0.018 4.018 18 C 0.051 3.949 19 H 0.129 0.871 20 O -0.375 6.375 21 C -0.171 4.171 22 C -0.108 4.108 23 C -0.090 4.090 24 C -0.150 4.150 25 C -0.148 4.148 26 C -0.156 4.156 27 C -0.148 4.148 28 C -0.149 4.149 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.247 0.753 34 H 0.247 0.753 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.238 0.762 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.149 0.851 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.222 -31.815 0.290 32.242 hybrid contribution -0.067 0.917 -0.359 0.987 sum 5.155 -30.899 -0.069 31.326 Atomic orbital electron populations 1.69681 1.07012 1.29617 1.49274 1.26115 0.96514 1.02631 0.95742 0.84870 0.77915 0.76503 0.78704 1.19563 1.19653 1.19463 1.19749 0.92988 0.83574 1.50465 0.89572 1.41823 1.09583 1.04563 1.63449 1.20425 0.88126 0.85922 0.83521 1.90469 1.15180 1.87554 1.57996 1.20575 0.90992 0.83084 1.03998 1.44699 1.10995 1.03329 1.79220 1.15980 0.85141 0.80852 0.77797 1.90879 1.15705 1.84764 1.60275 1.44846 1.09349 1.04708 1.79502 1.22051 0.97604 0.79368 1.02782 1.22093 0.90718 0.92151 0.89918 0.87112 1.86579 1.41678 1.92546 1.16651 1.22104 0.98199 0.92858 1.03985 1.20487 0.97309 0.89339 1.03699 1.20106 0.99019 0.96534 0.93353 1.21335 0.99882 0.95578 0.98251 1.21445 0.99384 0.95009 0.98956 1.21448 1.00546 1.00870 0.92764 1.21449 0.99027 0.95391 0.98915 1.21321 1.00267 0.95086 0.98222 0.91079 0.76693 0.89093 0.89083 0.75257 0.75313 0.91665 0.91188 0.76245 0.90640 0.90267 0.90552 0.90260 0.85106 0.84740 0.84714 0.84715 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.66 13.05 21.66 0.28 -48.38 16 2 C -0.01 -0.48 5.50 84.93 0.47 -0.02 16 3 Si 1.00 41.73 29.55 68.60 2.03 43.76 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.34 -18.69 9.68 84.04 0.81 -17.87 16 8 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -28.15 5.29 -306.99 -1.62 -29.77 16 10 C 0.43 20.10 7.85 87.66 0.69 20.79 16 11 O -0.62 -32.33 15.24 -3.06 -0.05 -32.37 16 12 C 0.14 5.28 6.15 85.63 0.53 5.81 16 13 N -0.72 -24.17 5.53 -482.30 -2.67 -26.84 16 14 C 0.70 22.28 8.57 179.06 1.53 23.82 16 15 O -0.63 -24.44 16.34 -3.98 -0.07 -24.51 16 16 N -0.73 -16.28 5.45 -478.54 -2.61 -18.89 16 17 C 0.11 1.84 5.34 86.38 0.46 2.30 16 18 C 0.11 1.27 3.05 30.59 0.09 1.36 16 19 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 20 O -0.57 -7.20 12.62 -148.98 -1.88 -9.08 16 21 C -0.13 -1.27 4.88 30.59 0.15 -1.12 16 22 C -0.07 -0.72 5.24 29.85 0.16 -0.57 16 23 C -0.09 -1.14 5.13 -19.86 -0.10 -1.24 16 24 C -0.13 -1.68 9.70 22.27 0.22 -1.46 16 25 C -0.13 -1.57 10.05 22.27 0.22 -1.35 16 26 C -0.14 -1.63 10.05 22.27 0.22 -1.41 16 27 C -0.13 -1.56 10.05 22.27 0.22 -1.33 16 28 C -0.13 -1.64 9.70 22.27 0.22 -1.43 16 29 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 30 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 31 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.09 3.24 8.14 -2.39 -0.02 3.23 16 33 H 0.41 13.37 7.45 -92.71 -0.69 12.68 16 34 H 0.41 7.81 8.36 -92.71 -0.78 7.04 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.39 3.01 9.05 -74.06 -0.67 2.34 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.73 8.08 -2.39 -0.02 0.72 16 41 H 0.08 0.84 7.77 -2.39 -0.02 0.82 16 42 H 0.13 1.29 8.06 -2.91 -0.02 1.26 16 43 H 0.13 1.12 8.06 -2.91 -0.02 1.10 16 44 H 0.13 1.05 8.06 -2.91 -0.02 1.03 16 45 H 0.13 1.10 8.06 -2.91 -0.02 1.08 16 46 H 0.13 1.27 8.06 -2.92 -0.02 1.25 16 Total: -1.00 -70.71 396.69 -2.52 -73.23 By element: Atomic # 1 Polarization: 48.41 SS G_CDS: -1.83 Total: 46.58 kcal Atomic # 6 Polarization: 20.39 SS G_CDS: 5.89 Total: 26.28 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -6.62 Total: -123.88 kcal Atomic # 8 Polarization: -63.97 SS G_CDS: -1.99 Total: -65.96 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -70.71 -2.52 -73.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358279178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.631 kcal (2) G-P(sol) polarization free energy of solvation -70.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds