Wall clock time and date at job start Tue Mar 31 2020 18:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86799 * 119.99877 * 2 1 4 4 H 1.48501 * 109.47129 * 240.00316 * 3 2 1 5 5 H 1.48498 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47057 * 119.99983 * 3 2 1 7 7 C 1.38942 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00087 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00302 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00072 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 C 1.52996 * 109.47059 * 179.72339 * 17 16 14 19 19 H 1.09008 * 109.47304 * 304.99667 * 18 17 16 20 20 O 1.42902 * 109.47328 * 64.99617 * 18 17 16 21 21 C 1.53003 * 109.47530 * 184.99929 * 18 17 16 22 22 C 1.53000 * 109.47505 * 174.99849 * 21 18 17 23 23 C 1.50700 * 109.47108 * 179.97438 * 22 21 18 24 24 C 1.38224 * 120.00062 * 269.72750 * 23 22 21 25 25 C 1.38235 * 119.99979 * 179.76593 * 24 23 22 26 26 C 1.38239 * 119.99916 * 0.50904 * 25 24 23 27 27 C 1.38232 * 120.00014 * 359.74225 * 26 25 24 28 28 C 1.38236 * 119.99640 * 90.00016 * 23 22 21 29 29 H 0.96997 * 119.99818 * 0.02562 * 1 2 3 30 30 H 0.97002 * 119.99872 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47088 * 59.99268 * 12 10 9 32 32 H 1.09006 * 109.46998 * 299.99468 * 12 10 9 33 33 H 0.97000 * 120.00386 * 0.02562 * 13 12 10 34 34 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 35 35 H 1.09004 * 109.46963 * 299.72135 * 17 16 14 36 36 H 1.08994 * 109.47567 * 59.72287 * 17 16 14 37 37 H 0.96696 * 113.99765 * 60.00422 * 20 18 17 38 38 H 1.08998 * 109.46886 * 295.00118 * 21 18 17 39 39 H 1.09002 * 109.46923 * 54.99368 * 21 18 17 40 40 H 1.08994 * 109.46562 * 299.99961 * 22 21 18 41 41 H 1.08996 * 109.46750 * 59.99836 * 22 21 18 42 42 H 1.08002 * 120.00139 * 0.02562 * 24 23 22 43 43 H 1.08003 * 120.00149 * 180.23124 * 25 24 23 44 44 H 1.08001 * 119.99711 * 179.72984 * 26 25 24 45 45 H 1.07992 * 120.00032 * 179.97438 * 27 26 25 46 46 H 1.07996 * 120.00344 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1959 -5.9764 0.0004 14 6 1.7466 -7.2471 0.0013 15 8 0.5512 -7.4693 0.0022 16 7 2.6225 -8.2715 0.0011 17 6 2.1341 -9.6527 -0.0041 18 6 3.3241 -10.6143 -0.0101 19 1 3.9759 -10.3806 -0.8520 20 8 4.0544 -10.4761 1.2104 21 6 2.8174 -12.0520 -0.1413 22 6 4.0090 -13.0028 -0.2727 23 6 3.5099 -14.4189 -0.4013 24 6 3.3215 -15.1907 0.7299 25 6 2.8590 -16.4881 0.6123 26 6 2.5950 -17.0171 -0.6373 27 6 2.7883 -16.2470 -1.7688 28 6 3.2458 -14.9479 -1.6508 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6167 -4.9208 -0.8885 32 1 0.6176 -4.9205 0.8915 33 1 3.1495 -5.7992 0.0000 34 1 3.5761 -8.0942 0.0000 35 1 1.5299 -9.8278 0.8861 36 1 1.5272 -9.8202 -0.8939 37 1 3.5356 -10.6692 2.0031 38 1 2.2384 -12.3153 0.7438 39 1 2.1865 -12.1356 -1.0263 40 1 4.5879 -12.7394 -1.1578 41 1 4.6397 -12.9191 0.6122 42 1 3.5316 -14.7787 1.7059 43 1 2.7083 -17.0899 1.4963 44 1 2.2379 -18.0322 -0.7294 45 1 2.5825 -16.6605 -2.7450 46 1 3.3976 -14.3465 -2.5349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358279181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:07 Heat of formation + Delta-G solvation = -109.351670 kcal Electronic energy + Delta-G solvation = -26690.528261 eV Core-core repulsion = 22579.332683 eV Total energy + Delta-G solvation = -4111.195578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.01146 -39.68444 -38.45822 -37.93692 -34.50294 -34.32010 -34.19961 -33.61786 -31.37259 -31.27931 -30.92089 -28.51210 -26.98148 -24.67805 -23.87172 -22.96908 -22.04965 -21.31050 -20.58056 -19.56550 -18.42186 -17.98926 -17.17971 -16.97142 -16.61745 -15.85398 -15.68472 -15.61828 -15.39673 -15.22251 -14.71491 -14.35298 -14.29278 -14.13933 -13.83313 -13.82358 -13.49644 -13.45057 -13.41694 -13.01518 -12.62158 -12.36212 -12.15961 -11.85192 -11.63274 -11.61588 -11.49110 -11.22885 -11.16657 -11.09283 -10.49743 -10.46278 -10.30347 -10.02883 -9.61193 -9.31773 -9.17688 -9.07076 -8.60814 -8.58885 -8.08403 -6.49893 -3.91992 0.95515 1.00429 2.78921 3.14854 3.22523 3.26526 3.38084 3.40489 3.76894 3.96494 4.10841 4.19300 4.38958 4.41313 4.50895 4.61966 4.63923 4.72093 4.84526 4.92024 4.92503 5.06876 5.14270 5.16283 5.18780 5.30620 5.41614 5.50295 5.61179 5.65268 5.76361 5.80652 5.93053 6.02195 6.07437 6.09923 6.12711 6.24788 6.47722 6.61596 6.77079 7.10683 7.25559 7.47209 7.93755 8.25244 8.46920 8.80362 9.06090 9.41079 9.89159 10.66938 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.043575 B = 0.001379 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.416306 B =20297.635986 C =20514.448373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.724 5.724 14 C 0.704 3.296 15 O -0.601 6.601 16 N -0.745 5.745 17 C 0.110 3.890 18 C 0.095 3.905 19 H 0.107 0.893 20 O -0.557 6.557 21 C -0.142 4.142 22 C -0.077 4.077 23 C -0.080 4.080 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.119 4.119 28 C -0.119 4.119 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.407 0.593 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.377 0.623 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.811 -31.195 -0.451 31.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.484 6.484 12 C 0.000 4.000 13 N -0.381 5.381 14 C 0.403 3.597 15 O -0.480 6.480 16 N -0.402 5.402 17 C -0.016 4.016 18 C 0.036 3.964 19 H 0.125 0.875 20 O -0.362 6.362 21 C -0.180 4.180 22 C -0.114 4.114 23 C -0.080 4.080 24 C -0.136 4.136 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.137 4.137 28 C -0.137 4.137 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.245 0.755 34 H 0.235 0.765 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.225 0.775 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.830 -31.021 -0.860 31.407 hybrid contribution 0.040 0.789 0.300 0.845 sum 4.870 -30.232 -0.560 30.627 Atomic orbital electron populations 1.69611 1.05998 1.28601 1.49298 1.25315 0.95657 0.99894 0.96788 0.85873 0.78771 0.80175 0.79139 1.19795 1.20861 1.19793 1.19683 0.93442 0.82039 1.48371 0.87742 1.41776 1.09478 1.04427 1.62696 1.19771 0.88304 0.85022 0.85504 1.90492 1.13750 1.86864 1.57326 1.20780 0.91217 0.84873 1.03097 1.44767 1.11267 1.03316 1.78771 1.15866 0.85165 0.80628 0.78004 1.90904 1.14112 1.84345 1.58633 1.44907 1.09318 1.04707 1.81236 1.21850 0.96328 0.80378 1.03016 1.22228 0.92949 0.92804 0.88433 0.87537 1.86601 1.41644 1.92370 1.15611 1.22198 0.98217 0.93894 1.03692 1.20547 0.97358 0.89967 1.03576 1.19947 0.98868 0.96016 0.93207 1.21087 0.99943 0.94280 0.98282 1.21173 0.99295 0.95672 0.97563 1.21164 1.00667 0.99935 0.92766 1.21171 0.99407 0.94444 0.98652 1.21102 0.99819 0.95631 0.97112 0.91556 0.77015 0.90051 0.90052 0.75547 0.76514 0.91428 0.90849 0.77534 0.90963 0.90382 0.90824 0.90106 0.86058 0.86139 0.86237 0.86126 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.95 13.05 55.50 0.72 -23.22 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.59 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.31 -8.35 9.68 -14.94 -0.14 -8.49 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.69 5.29 -10.96 -0.06 -13.75 16 10 C 0.43 9.92 7.85 -10.98 -0.09 9.83 16 11 O -0.60 -15.39 15.24 5.55 0.08 -15.30 16 12 C 0.13 2.43 6.15 -5.19 -0.03 2.40 16 13 N -0.72 -12.37 5.53 -66.41 -0.37 -12.74 16 14 C 0.70 11.52 8.57 -86.92 -0.74 10.78 16 15 O -0.60 -11.82 16.34 5.28 0.09 -11.73 16 16 N -0.74 -8.85 5.51 -65.23 -0.36 -9.21 16 17 C 0.11 1.03 5.31 -4.04 -0.02 1.00 16 18 C 0.10 0.63 3.00 -26.73 -0.08 0.55 16 19 H 0.11 0.70 8.14 -51.92 -0.42 0.28 16 20 O -0.56 -4.07 12.82 -35.23 -0.45 -4.52 16 21 C -0.14 -0.79 4.88 -26.73 -0.13 -0.92 16 22 C -0.08 -0.45 5.24 -27.88 -0.15 -0.59 16 23 C -0.08 -0.55 5.13 -104.63 -0.54 -1.09 16 24 C -0.12 -0.79 9.70 -39.59 -0.38 -1.18 16 25 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 26 C -0.13 -0.81 10.05 -39.58 -0.40 -1.21 16 27 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 28 C -0.12 -0.81 9.70 -39.58 -0.38 -1.19 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.41 6.79 7.45 -40.82 -0.30 6.49 16 34 H 0.40 4.12 8.49 -40.82 -0.35 3.78 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.38 1.78 9.04 45.56 0.41 2.20 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 41 H 0.08 0.49 7.76 -51.93 -0.40 0.08 16 42 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 43 H 0.12 0.56 8.06 -52.48 -0.42 0.14 16 44 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 396.99 15.07 5.98 5.98 Total: -1.00 -33.58 396.99 -9.33 -42.91 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -5.97 Total: 17.87 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -3.98 Total: 8.16 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.06 Total: -58.93 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.28 Total: -31.56 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.58 -9.33 -42.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358279181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.445 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds