Wall clock time and date at job start Tue Mar 31 2020 18:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86799 * 119.99877 * 2 1 4 4 H 1.48501 * 109.47129 * 240.00316 * 3 2 1 5 5 H 1.48498 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47057 * 119.99983 * 3 2 1 7 7 C 1.38942 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00087 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00302 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00072 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 C 1.52996 * 109.47059 * 179.72339 * 17 16 14 19 19 H 1.09008 * 109.47304 * 304.99667 * 18 17 16 20 20 O 1.42902 * 109.47328 * 64.99617 * 18 17 16 21 21 C 1.53003 * 109.47530 * 184.99929 * 18 17 16 22 22 C 1.53000 * 109.47505 * 174.99849 * 21 18 17 23 23 C 1.50700 * 109.47108 * 179.97438 * 22 21 18 24 24 C 1.38224 * 120.00062 * 269.72750 * 23 22 21 25 25 C 1.38235 * 119.99979 * 179.76593 * 24 23 22 26 26 C 1.38239 * 119.99916 * 0.50904 * 25 24 23 27 27 C 1.38232 * 120.00014 * 359.74225 * 26 25 24 28 28 C 1.38236 * 119.99640 * 90.00016 * 23 22 21 29 29 H 0.96997 * 119.99818 * 0.02562 * 1 2 3 30 30 H 0.97002 * 119.99872 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47088 * 59.99268 * 12 10 9 32 32 H 1.09006 * 109.46998 * 299.99468 * 12 10 9 33 33 H 0.97000 * 120.00386 * 0.02562 * 13 12 10 34 34 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 35 35 H 1.09004 * 109.46963 * 299.72135 * 17 16 14 36 36 H 1.08994 * 109.47567 * 59.72287 * 17 16 14 37 37 H 0.96696 * 113.99765 * 60.00422 * 20 18 17 38 38 H 1.08998 * 109.46886 * 295.00118 * 21 18 17 39 39 H 1.09002 * 109.46923 * 54.99368 * 21 18 17 40 40 H 1.08994 * 109.46562 * 299.99961 * 22 21 18 41 41 H 1.08996 * 109.46750 * 59.99836 * 22 21 18 42 42 H 1.08002 * 120.00139 * 0.02562 * 24 23 22 43 43 H 1.08003 * 120.00149 * 180.23124 * 25 24 23 44 44 H 1.08001 * 119.99711 * 179.72984 * 26 25 24 45 45 H 1.07992 * 120.00032 * 179.97438 * 27 26 25 46 46 H 1.07996 * 120.00344 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1959 -5.9764 0.0004 14 6 1.7466 -7.2471 0.0013 15 8 0.5512 -7.4693 0.0022 16 7 2.6225 -8.2715 0.0011 17 6 2.1341 -9.6527 -0.0041 18 6 3.3241 -10.6143 -0.0101 19 1 3.9759 -10.3806 -0.8520 20 8 4.0544 -10.4761 1.2104 21 6 2.8174 -12.0520 -0.1413 22 6 4.0090 -13.0028 -0.2727 23 6 3.5099 -14.4189 -0.4013 24 6 3.3215 -15.1907 0.7299 25 6 2.8590 -16.4881 0.6123 26 6 2.5950 -17.0171 -0.6373 27 6 2.7883 -16.2470 -1.7688 28 6 3.2458 -14.9479 -1.6508 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6167 -4.9208 -0.8885 32 1 0.6176 -4.9205 0.8915 33 1 3.1495 -5.7992 0.0000 34 1 3.5761 -8.0942 0.0000 35 1 1.5299 -9.8278 0.8861 36 1 1.5272 -9.8202 -0.8939 37 1 3.5356 -10.6692 2.0031 38 1 2.2384 -12.3153 0.7438 39 1 2.1865 -12.1356 -1.0263 40 1 4.5879 -12.7394 -1.1578 41 1 4.6397 -12.9191 0.6122 42 1 3.5316 -14.7787 1.7059 43 1 2.7083 -17.0899 1.4963 44 1 2.2379 -18.0322 -0.7294 45 1 2.5825 -16.6605 -2.7450 46 1 3.3976 -14.3465 -2.5349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358279181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:07 Heat of formation + Delta-G solvation = -134.869140 kcal Electronic energy + Delta-G solvation = -26691.634782 eV Core-core repulsion = 22579.332683 eV Total energy + Delta-G solvation = -4112.302099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.23507 -40.27196 -40.01374 -38.82912 -36.24320 -35.33794 -35.25345 -34.76849 -33.36001 -31.72983 -31.55610 -29.63577 -28.15803 -26.33721 -24.72336 -23.42463 -22.65636 -22.04133 -21.57727 -21.35105 -20.10201 -19.56783 -17.89584 -17.61578 -17.41602 -17.31223 -16.80844 -16.68028 -16.47017 -16.09364 -15.99645 -15.87087 -15.56317 -15.24923 -15.05078 -14.72001 -14.32971 -14.11565 -14.01244 -13.93283 -13.68037 -13.53351 -13.52343 -13.18676 -12.88354 -12.84830 -12.45920 -12.12838 -12.07129 -11.95726 -11.77162 -11.61139 -11.55227 -11.49419 -10.97098 -10.54564 -10.43639 -10.09218 -9.80935 -9.78883 -9.54496 -8.49796 -6.00189 0.48328 0.53231 1.39094 1.43311 1.53388 1.62524 1.90957 2.11937 2.29714 2.89678 3.04976 3.17423 3.29337 3.54021 3.64532 3.87526 3.96257 4.11563 4.19507 4.22428 4.29043 4.36707 4.38445 4.43753 4.47127 4.57074 4.66200 4.69805 4.73182 4.85030 4.91638 5.15509 5.19357 5.26976 5.31653 5.35313 5.39458 5.48034 5.61729 5.66739 5.77848 5.91811 5.96048 6.17169 6.49296 6.81621 7.03257 7.04467 7.43658 7.53746 7.95657 8.66837 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.043575 B = 0.001379 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.416306 B =20297.635986 C =20514.448373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.086 0.914 9 N -0.558 5.558 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.725 5.725 14 C 0.703 3.297 15 O -0.634 6.634 16 N -0.728 5.728 17 C 0.107 3.893 18 C 0.111 3.889 19 H 0.111 0.889 20 O -0.568 6.568 21 C -0.133 4.133 22 C -0.071 4.071 23 C -0.090 4.090 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.138 4.138 27 C -0.130 4.130 28 C -0.133 4.133 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.410 0.590 34 H 0.410 0.590 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.388 0.612 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.200 -31.900 -0.424 32.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.104 0.896 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.512 6.512 12 C 0.014 3.986 13 N -0.382 5.382 14 C 0.402 3.598 15 O -0.516 6.516 16 N -0.384 5.384 17 C -0.018 4.018 18 C 0.051 3.949 19 H 0.129 0.871 20 O -0.375 6.375 21 C -0.171 4.171 22 C -0.108 4.108 23 C -0.090 4.090 24 C -0.149 4.149 25 C -0.148 4.148 26 C -0.156 4.156 27 C -0.148 4.148 28 C -0.151 4.151 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.247 0.753 34 H 0.247 0.753 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.238 0.762 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.149 0.851 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.152 0.848 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.235 -31.771 -0.825 32.210 hybrid contribution -0.073 0.894 0.303 0.947 sum 5.162 -30.877 -0.522 31.310 Atomic orbital electron populations 1.69679 1.07003 1.29685 1.49200 1.26115 0.96516 1.02631 0.95722 0.84931 0.77720 0.76260 0.79088 1.19496 1.19622 1.19512 1.19715 0.93002 0.83582 1.50565 0.89556 1.41820 1.09581 1.04556 1.63436 1.20426 0.88127 0.85920 0.83541 1.90469 1.15173 1.87554 1.58014 1.20576 0.90991 0.83086 1.03996 1.44699 1.10998 1.03330 1.79215 1.15985 0.85149 0.80852 0.77788 1.90881 1.15697 1.84764 1.60272 1.44867 1.09315 1.04737 1.79519 1.22061 0.97591 0.79339 1.02772 1.22092 0.91753 0.92542 0.88511 0.87113 1.86583 1.42216 1.92427 1.16272 1.22107 0.98155 0.92939 1.03940 1.20487 0.97251 0.89489 1.03613 1.20101 0.99061 0.96497 0.93352 1.21319 1.00125 0.94608 0.98829 1.21450 0.99126 0.95901 0.98294 1.21450 1.00593 1.00791 0.92792 1.21443 0.99307 0.94548 0.99504 1.21332 1.00069 0.96075 0.97582 0.91071 0.76691 0.89073 0.89108 0.75253 0.75349 0.91641 0.91174 0.76225 0.90593 0.90294 0.90573 0.90245 0.85071 0.84696 0.84712 0.84756 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.66 13.05 21.66 0.28 -48.38 16 2 C -0.01 -0.47 5.50 84.92 0.47 -0.01 16 3 Si 1.00 41.71 29.55 68.60 2.03 43.73 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.34 -18.73 9.68 84.04 0.81 -17.92 16 8 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 9 N -0.56 -28.14 5.29 -306.99 -1.62 -29.76 16 10 C 0.43 20.09 7.85 87.66 0.69 20.78 16 11 O -0.62 -32.31 15.24 -3.07 -0.05 -32.36 16 12 C 0.14 5.28 6.15 85.63 0.53 5.81 16 13 N -0.72 -24.18 5.53 -482.28 -2.67 -26.84 16 14 C 0.70 22.29 8.57 179.05 1.53 23.82 16 15 O -0.63 -24.45 16.34 -4.01 -0.07 -24.51 16 16 N -0.73 -16.30 5.51 -478.54 -2.64 -18.93 16 17 C 0.11 1.85 5.31 86.38 0.46 2.31 16 18 C 0.11 1.27 3.00 30.59 0.09 1.36 16 19 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 20 O -0.57 -7.24 12.82 -148.98 -1.91 -9.15 16 21 C -0.13 -1.27 4.88 30.60 0.15 -1.12 16 22 C -0.07 -0.73 5.24 29.85 0.16 -0.57 16 23 C -0.09 -1.14 5.13 -19.87 -0.10 -1.24 16 24 C -0.13 -1.63 9.70 22.27 0.22 -1.42 16 25 C -0.13 -1.55 10.05 22.27 0.22 -1.33 16 26 C -0.14 -1.63 10.05 22.27 0.22 -1.41 16 27 C -0.13 -1.58 10.05 22.27 0.22 -1.36 16 28 C -0.13 -1.69 9.70 22.27 0.22 -1.47 16 29 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 30 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 31 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 33 H 0.41 13.36 7.45 -92.71 -0.69 12.67 16 34 H 0.41 7.76 8.49 -92.71 -0.79 6.97 16 35 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.39 2.96 9.04 -74.06 -0.67 2.29 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 41 H 0.08 0.84 7.76 -2.39 -0.02 0.82 16 42 H 0.13 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 44 H 0.13 1.06 8.06 -2.91 -0.02 1.03 16 45 H 0.13 1.13 8.06 -2.91 -0.02 1.11 16 46 H 0.13 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -70.76 396.99 -2.59 -73.36 By element: Atomic # 1 Polarization: 48.43 SS G_CDS: -1.84 Total: 46.59 kcal Atomic # 6 Polarization: 20.36 SS G_CDS: 5.89 Total: 26.25 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -6.64 Total: -123.91 kcal Atomic # 8 Polarization: -63.99 SS G_CDS: -2.02 Total: -66.02 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -70.76 -2.59 -73.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358279181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.512 kcal (2) G-P(sol) polarization free energy of solvation -70.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds