Wall clock time and date at job start Tue Mar 31 2020 18:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 120.00457 * 2 1 4 4 H 1.48502 * 109.47072 * 240.00357 * 3 2 1 5 5 H 1.48498 * 109.46796 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47076 * 120.00354 * 3 2 1 7 7 C 1.38955 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99652 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99796 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00226 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99993 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47487 * 179.97438 * 12 10 9 14 14 C 1.34773 * 120.00262 * 179.97438 * 13 12 10 15 15 O 1.21585 * 120.00106 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99972 * 179.97438 * 14 13 12 17 17 C 1.46501 * 120.00250 * 0.02562 * 16 14 13 18 18 C 1.52995 * 109.47129 * 270.00180 * 17 16 14 19 19 C 1.53005 * 109.47475 * 180.02562 * 18 17 16 20 20 O 1.42887 * 109.47293 * 179.97438 * 19 18 17 21 21 C 1.46497 * 119.99954 * 179.97438 * 16 14 13 22 22 C 1.50707 * 109.47012 * 90.00156 * 21 16 14 23 23 C 1.38238 * 119.99792 * 90.00154 * 22 21 16 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00220 * 359.97124 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00179 * 269.98090 * 22 21 16 28 28 H 0.97003 * 119.99866 * 359.97438 * 1 2 3 29 29 H 0.96993 * 119.99832 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.46837 * 59.99248 * 12 10 9 31 31 H 1.08997 * 109.46907 * 299.99889 * 12 10 9 32 32 H 0.97010 * 119.99828 * 0.02562 * 13 12 10 33 33 H 1.09001 * 109.46912 * 29.99983 * 17 16 14 34 34 H 1.08999 * 109.47052 * 149.99633 * 17 16 14 35 35 H 1.09008 * 109.46673 * 299.99648 * 18 17 16 36 36 H 1.08992 * 109.47456 * 59.99400 * 18 17 16 37 37 H 1.09001 * 109.46708 * 299.99890 * 19 18 17 38 38 H 1.08999 * 109.46910 * 59.99328 * 19 18 17 39 39 H 0.96701 * 114.00122 * 179.97438 * 20 19 18 40 40 H 1.09005 * 109.47643 * 330.00617 * 21 16 14 41 41 H 1.09000 * 109.47513 * 209.99781 * 21 16 14 42 42 H 1.08005 * 120.00068 * 359.97438 * 23 22 21 43 43 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 46 46 H 1.07999 * 119.99968 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6962 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2100 -3.5579 -0.0010 12 6 1.2435 -4.8630 0.0000 13 7 2.1954 -5.9765 -0.0007 14 6 1.7461 -7.2472 0.0002 15 8 0.5507 -7.4693 0.0020 16 7 2.6219 -8.2716 -0.0010 17 6 4.0623 -8.0040 -0.0027 18 6 4.5619 -7.9106 -1.4457 19 6 6.0663 -7.6318 -1.4476 20 8 6.5331 -7.5451 -2.7953 21 6 2.1335 -9.6528 0.0005 22 6 1.9634 -10.1270 -1.4199 23 6 3.0141 -10.7436 -2.0732 24 6 2.8579 -11.1791 -3.3758 25 6 1.6509 -10.9985 -4.0250 26 6 0.6020 -10.3771 -3.3735 27 6 0.7566 -9.9458 -2.0693 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3906 0.0002 30 1 0.6164 -4.9208 -0.8896 31 1 0.6172 -4.9205 0.8903 32 1 3.1492 -5.7993 -0.0011 33 1 4.2575 -7.0627 0.5110 34 1 4.5826 -8.8127 0.5104 35 1 4.3667 -8.8520 -1.9595 36 1 4.0415 -7.1020 -1.9589 37 1 6.2620 -6.6906 -0.9337 38 1 6.5864 -8.4408 -0.9346 39 1 7.4808 -7.3691 -2.8728 40 1 1.1742 -9.6985 0.5161 41 1 2.8524 -10.2919 0.5132 42 1 3.9570 -10.8851 -1.5658 43 1 3.6789 -11.6604 -3.8863 44 1 1.5288 -11.3391 -5.0426 45 1 -0.3397 -10.2320 -3.8821 46 1 -0.0644 -9.4647 -1.5586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358299018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:11 Heat of formation + Delta-G solvation = -88.890652 kcal Electronic energy + Delta-G solvation = -28948.819412 eV Core-core repulsion = 24838.511090 eV Total energy + Delta-G solvation = -4110.308322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.43225 -39.07803 -38.19083 -37.29390 -35.82991 -34.52254 -33.75965 -32.45281 -31.38992 -31.14207 -30.84446 -27.87841 -26.30098 -25.25694 -24.15924 -22.62842 -21.91098 -21.50320 -19.72704 -19.60075 -18.37809 -17.89441 -17.38300 -17.01926 -16.37033 -15.75455 -15.61436 -15.41083 -15.07494 -15.05892 -14.62314 -14.46418 -14.23489 -14.05671 -13.58833 -13.48638 -13.42222 -13.20720 -13.12239 -12.71978 -12.54913 -12.16521 -12.03854 -11.85226 -11.62278 -11.34897 -11.24309 -11.12574 -11.09843 -11.02449 -10.50396 -10.30718 -10.10549 -9.98881 -9.61721 -9.00478 -8.93515 -8.82429 -8.61344 -8.49645 -8.08972 -6.50376 -3.92356 1.20101 1.35770 2.72960 3.14127 3.21825 3.25561 3.35887 3.75775 3.76586 3.90650 4.11945 4.27106 4.66950 4.72723 4.73634 4.90130 4.93284 4.99688 5.03328 5.08119 5.15122 5.18166 5.19915 5.36602 5.40579 5.42388 5.57853 5.60691 5.89547 5.90279 5.92700 6.00311 6.02249 6.09265 6.14046 6.37445 6.42264 6.46539 6.57466 6.76778 6.94458 7.00947 7.46626 7.47660 7.93195 8.15227 8.46374 8.77785 9.05532 9.40663 9.88629 10.66516 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.002699 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.165667 B =10370.425379 C =11305.442374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.127 3.873 13 N -0.723 5.723 14 C 0.709 3.291 15 O -0.592 6.592 16 N -0.624 5.624 17 C 0.113 3.887 18 C -0.148 4.148 19 C 0.078 3.922 20 O -0.573 6.573 21 C 0.173 3.827 22 C -0.106 4.106 23 C -0.106 4.106 24 C -0.126 4.126 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.091 4.091 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.406 0.594 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.378 0.622 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.249 -21.735 -2.497 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.122 0.878 9 N -0.183 5.183 10 C 0.215 3.785 11 O -0.485 6.485 12 C -0.001 4.001 13 N -0.382 5.382 14 C 0.410 3.590 15 O -0.470 6.470 16 N -0.360 5.360 17 C -0.011 4.011 18 C -0.187 4.187 19 C 0.000 4.000 20 O -0.378 6.378 21 C 0.050 3.950 22 C -0.108 4.108 23 C -0.124 4.124 24 C -0.144 4.144 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.110 4.110 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.246 0.754 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.225 0.775 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.378 -21.777 -2.579 22.838 hybrid contribution 0.900 1.148 -0.044 1.459 sum 7.278 -20.630 -2.623 22.033 Atomic orbital electron populations 1.69606 1.06003 1.28611 1.49274 1.25319 0.95658 0.99900 0.96810 0.85879 0.78786 0.80203 0.79132 1.19778 1.20853 1.19802 1.19672 0.93408 0.82021 1.48359 0.87765 1.41772 1.09481 1.04431 1.62664 1.19755 0.88289 0.85005 0.85479 1.90480 1.13764 1.86875 1.57396 1.20793 0.91291 0.84948 1.03108 1.44949 1.11310 1.03353 1.78586 1.15774 0.84907 0.80549 0.77762 1.90874 1.13739 1.83961 1.58472 1.47035 1.05205 1.04979 1.78773 1.21426 0.80807 1.02654 0.96168 1.22116 0.94443 1.04403 0.97697 1.22080 0.94727 0.99784 0.83440 1.86494 1.29071 1.95315 1.26894 1.20216 1.01609 0.80589 0.92553 1.20299 0.94109 0.99049 0.97313 1.20983 0.97961 0.98499 0.94995 1.21080 0.97486 1.00806 0.95049 1.21152 0.93560 0.99300 0.99698 1.21194 0.99056 0.98897 0.95109 1.21268 0.97641 0.97437 0.94643 0.91542 0.77020 0.90068 0.90003 0.75443 0.90068 0.89982 0.90082 0.90643 0.93066 0.93811 0.77488 0.88748 0.89853 0.86364 0.86336 0.86399 0.86206 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.99 13.05 55.50 0.72 -23.27 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.60 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.31 -8.32 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 9 N -0.55 -13.69 5.29 -10.96 -0.06 -13.75 16 10 C 0.43 9.93 7.85 -10.98 -0.09 9.84 16 11 O -0.60 -15.30 15.24 5.55 0.08 -15.22 16 12 C 0.13 2.41 6.15 -5.19 -0.03 2.38 16 13 N -0.72 -12.53 5.39 -66.42 -0.36 -12.89 16 14 C 0.71 11.66 8.28 -86.92 -0.72 10.94 16 15 O -0.59 -11.21 15.45 5.29 0.08 -11.13 16 16 N -0.62 -7.80 2.46 -180.80 -0.44 -8.25 16 17 C 0.11 1.15 5.22 -4.04 -0.02 1.13 16 18 C -0.15 -1.66 5.91 -26.73 -0.16 -1.82 16 19 C 0.08 0.75 7.05 37.16 0.26 1.02 16 20 O -0.57 -6.28 13.66 -35.23 -0.48 -6.76 16 21 C 0.17 1.85 5.58 -5.19 -0.03 1.82 16 22 C -0.11 -1.20 5.39 -104.62 -0.56 -1.77 16 23 C -0.11 -1.05 7.55 -39.58 -0.30 -1.35 16 24 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 25 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 26 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 27 C -0.09 -1.14 9.70 -39.58 -0.38 -1.53 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.40 9.53 7.90 -40.82 -0.32 9.21 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.41 6.95 5.17 -40.82 -0.21 6.73 16 33 H 0.08 0.88 6.36 -51.93 -0.33 0.55 16 34 H 0.08 0.59 7.89 -51.93 -0.41 0.18 16 35 H 0.08 0.92 5.27 -51.92 -0.27 0.64 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.38 2.35 9.12 45.56 0.42 2.77 16 40 H 0.09 1.10 7.36 -51.93 -0.38 0.72 16 41 H 0.08 0.64 7.84 -51.93 -0.41 0.23 16 42 H 0.12 0.95 7.73 -52.48 -0.41 0.54 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 45 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.13 1.77 7.58 -52.49 -0.40 1.37 16 LS Contribution 387.96 15.07 5.85 5.85 Total: -1.00 -33.54 387.96 -8.71 -42.25 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -5.62 Total: 19.86 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -3.46 Total: 7.73 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.14 Total: -58.16 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.31 Total: -33.10 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.54 -8.71 -42.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358299018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.636 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds