Wall clock time and date at job start Tue Mar 31 2020 18:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 120.00457 * 2 1 4 4 H 1.48502 * 109.47072 * 240.00357 * 3 2 1 5 5 H 1.48498 * 109.46796 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47076 * 120.00354 * 3 2 1 7 7 C 1.38955 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99652 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99796 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00226 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99993 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47487 * 179.97438 * 12 10 9 14 14 C 1.34773 * 120.00262 * 179.97438 * 13 12 10 15 15 O 1.21585 * 120.00106 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99972 * 179.97438 * 14 13 12 17 17 C 1.46501 * 120.00250 * 0.02562 * 16 14 13 18 18 C 1.52995 * 109.47129 * 270.00180 * 17 16 14 19 19 C 1.53005 * 109.47475 * 180.02562 * 18 17 16 20 20 O 1.42887 * 109.47293 * 179.97438 * 19 18 17 21 21 C 1.46497 * 119.99954 * 179.97438 * 16 14 13 22 22 C 1.50707 * 109.47012 * 90.00156 * 21 16 14 23 23 C 1.38238 * 119.99792 * 90.00154 * 22 21 16 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00220 * 359.97124 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00179 * 269.98090 * 22 21 16 28 28 H 0.97003 * 119.99866 * 359.97438 * 1 2 3 29 29 H 0.96993 * 119.99832 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.46837 * 59.99248 * 12 10 9 31 31 H 1.08997 * 109.46907 * 299.99889 * 12 10 9 32 32 H 0.97010 * 119.99828 * 0.02562 * 13 12 10 33 33 H 1.09001 * 109.46912 * 29.99983 * 17 16 14 34 34 H 1.08999 * 109.47052 * 149.99633 * 17 16 14 35 35 H 1.09008 * 109.46673 * 299.99648 * 18 17 16 36 36 H 1.08992 * 109.47456 * 59.99400 * 18 17 16 37 37 H 1.09001 * 109.46708 * 299.99890 * 19 18 17 38 38 H 1.08999 * 109.46910 * 59.99328 * 19 18 17 39 39 H 0.96701 * 114.00122 * 179.97438 * 20 19 18 40 40 H 1.09005 * 109.47643 * 330.00617 * 21 16 14 41 41 H 1.09000 * 109.47513 * 209.99781 * 21 16 14 42 42 H 1.08005 * 120.00068 * 359.97438 * 23 22 21 43 43 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 46 46 H 1.07999 * 119.99968 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6962 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2100 -3.5579 -0.0010 12 6 1.2435 -4.8630 0.0000 13 7 2.1954 -5.9765 -0.0007 14 6 1.7461 -7.2472 0.0002 15 8 0.5507 -7.4693 0.0020 16 7 2.6219 -8.2716 -0.0010 17 6 4.0623 -8.0040 -0.0027 18 6 4.5619 -7.9106 -1.4457 19 6 6.0663 -7.6318 -1.4476 20 8 6.5331 -7.5451 -2.7953 21 6 2.1335 -9.6528 0.0005 22 6 1.9634 -10.1270 -1.4199 23 6 3.0141 -10.7436 -2.0732 24 6 2.8579 -11.1791 -3.3758 25 6 1.6509 -10.9985 -4.0250 26 6 0.6020 -10.3771 -3.3735 27 6 0.7566 -9.9458 -2.0693 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3906 0.0002 30 1 0.6164 -4.9208 -0.8896 31 1 0.6172 -4.9205 0.8903 32 1 3.1492 -5.7993 -0.0011 33 1 4.2575 -7.0627 0.5110 34 1 4.5826 -8.8127 0.5104 35 1 4.3667 -8.8520 -1.9595 36 1 4.0415 -7.1020 -1.9589 37 1 6.2620 -6.6906 -0.9337 38 1 6.5864 -8.4408 -0.9346 39 1 7.4808 -7.3691 -2.8728 40 1 1.1742 -9.6985 0.5161 41 1 2.8524 -10.2919 0.5132 42 1 3.9570 -10.8851 -1.5658 43 1 3.6789 -11.6604 -3.8863 44 1 1.5288 -11.3391 -5.0426 45 1 -0.3397 -10.2320 -3.8821 46 1 -0.0644 -9.4647 -1.5586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358299018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:10 Heat of formation + Delta-G solvation = -113.477815 kcal Electronic energy + Delta-G solvation = -28949.885592 eV Core-core repulsion = 24838.511090 eV Total energy + Delta-G solvation = -4111.374501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.60693 -40.29905 -39.73037 -38.14490 -36.85689 -36.27535 -35.39345 -33.44144 -33.30648 -32.07098 -31.67989 -29.38261 -27.30762 -26.59947 -25.63271 -23.43937 -22.81085 -22.36689 -21.39884 -20.94563 -20.12134 -19.32768 -18.26025 -17.90052 -17.56775 -17.24141 -16.90015 -16.61796 -16.33977 -16.14185 -15.96578 -15.87995 -15.55177 -15.33578 -15.11962 -14.50036 -14.27554 -14.23159 -14.11364 -13.80478 -13.66218 -13.54382 -13.45769 -13.33915 -12.90598 -12.85040 -12.47554 -12.21165 -12.13864 -12.06569 -11.94096 -11.82181 -11.56721 -11.30466 -10.84388 -10.56550 -10.30424 -10.10398 -9.77018 -9.75764 -9.55164 -8.51281 -6.01675 0.37059 0.53171 1.37562 1.41749 1.52296 1.61143 1.88790 2.09324 2.27486 2.74454 2.98872 3.14616 3.15830 3.44890 3.85247 3.92191 3.94668 4.16075 4.17927 4.23261 4.30639 4.31706 4.38342 4.41001 4.41809 4.44351 4.60387 4.62417 4.64690 4.77384 4.78871 5.04574 5.12305 5.17342 5.24918 5.31252 5.38019 5.47302 5.58235 5.64542 5.70537 5.87731 5.91503 6.14541 6.47200 6.87467 6.94164 7.02567 7.40932 7.50368 7.93297 8.65529 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.002699 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.165667 B =10370.425379 C =11305.442374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.338 4.338 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.434 3.566 11 O -0.623 6.623 12 C 0.140 3.860 13 N -0.726 5.726 14 C 0.704 3.296 15 O -0.622 6.622 16 N -0.614 5.614 17 C 0.112 3.888 18 C -0.141 4.141 19 C 0.078 3.922 20 O -0.598 6.598 21 C 0.171 3.829 22 C -0.115 4.115 23 C -0.104 4.104 24 C -0.130 4.130 25 C -0.125 4.125 26 C -0.140 4.140 27 C -0.117 4.117 28 H 0.280 0.720 29 H 0.398 0.602 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.408 0.592 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.032 0.968 37 H 0.045 0.955 38 H 0.080 0.920 39 H 0.397 0.603 40 H 0.078 0.922 41 H 0.125 0.875 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.138 0.862 45 H 0.126 0.874 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.308 -23.081 -2.386 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.467 4.467 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.221 3.779 11 O -0.511 6.511 12 C 0.012 3.988 13 N -0.385 5.385 14 C 0.406 3.594 15 O -0.503 6.503 16 N -0.349 5.349 17 C -0.011 4.011 18 C -0.180 4.180 19 C 0.000 4.000 20 O -0.407 6.407 21 C 0.049 3.951 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.148 4.148 25 C -0.143 4.143 26 C -0.158 4.158 27 C -0.136 4.136 28 H 0.089 0.911 29 H 0.232 0.768 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.247 0.753 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.102 0.898 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.247 0.753 40 H 0.096 0.904 41 H 0.143 0.857 42 H 0.164 0.836 43 H 0.161 0.839 44 H 0.156 0.844 45 H 0.144 0.856 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.463 -23.162 -2.468 24.783 hybrid contribution 0.284 1.467 -0.130 1.500 sum 8.748 -21.696 -2.598 23.537 Atomic orbital electron populations 1.69678 1.07053 1.29715 1.49211 1.26144 0.96534 1.02710 0.95744 0.84926 0.77730 0.76185 0.79142 1.19512 1.19624 1.19334 1.19708 0.92977 0.83498 1.50501 0.89510 1.41821 1.09562 1.04581 1.63423 1.20369 0.88127 0.85839 0.83583 1.90454 1.15083 1.87528 1.58003 1.20575 0.91100 0.83352 1.03800 1.44894 1.10966 1.03446 1.79200 1.15957 0.85072 0.80819 0.77602 1.90855 1.15256 1.84373 1.59798 1.47101 1.05813 1.04721 1.77266 1.21643 0.79407 1.04124 0.95924 1.22040 0.95439 1.02777 0.97777 1.22122 0.93747 1.00881 0.83232 1.86437 1.31044 1.95469 1.27753 1.20431 1.02166 0.79880 0.92622 1.20388 0.94095 0.99547 0.97637 1.21271 0.98389 0.97403 0.95122 1.21466 0.97923 1.00223 0.95186 1.21456 0.93424 0.98739 1.00676 1.21372 1.00060 0.99419 0.94930 1.21262 0.97983 0.98802 0.95513 0.91052 0.76757 0.89656 0.88911 0.75282 0.90833 0.85479 0.89840 0.94902 0.93646 0.90203 0.75303 0.90366 0.85705 0.83620 0.83874 0.84382 0.85633 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.23 13.05 21.66 0.28 -48.95 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 1.00 41.96 29.55 68.60 2.03 43.99 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.34 -18.77 9.68 84.04 0.81 -17.95 16 8 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.56 -28.56 5.29 -306.98 -1.62 -30.18 16 10 C 0.43 20.52 7.85 87.66 0.69 21.21 16 11 O -0.62 -32.52 15.24 -3.06 -0.05 -32.57 16 12 C 0.14 5.43 6.15 85.64 0.53 5.96 16 13 N -0.73 -25.50 5.39 -482.31 -2.60 -28.10 16 14 C 0.70 23.33 8.28 179.06 1.48 24.82 16 15 O -0.62 -24.18 15.45 -3.98 -0.06 -24.24 16 16 N -0.61 -14.66 2.46 -844.20 -2.07 -16.74 16 17 C 0.11 2.01 5.22 86.38 0.45 2.46 16 18 C -0.14 -2.96 5.91 30.59 0.18 -2.77 16 19 C 0.08 1.33 7.05 71.98 0.51 1.84 16 20 O -0.60 -12.07 13.66 -148.98 -2.03 -14.11 16 21 C 0.17 3.38 5.58 85.64 0.48 3.86 16 22 C -0.12 -2.49 5.39 -19.86 -0.11 -2.60 16 23 C -0.10 -1.78 7.55 22.27 0.17 -1.62 16 24 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 25 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 26 C -0.14 -3.18 10.05 22.27 0.22 -2.96 16 27 C -0.12 -3.01 9.70 22.27 0.22 -2.80 16 28 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.40 19.67 7.90 -92.71 -0.73 18.94 16 30 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 31 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 32 H 0.41 14.12 5.17 -92.70 -0.48 13.64 16 33 H 0.07 1.48 6.36 -2.39 -0.02 1.47 16 34 H 0.13 1.20 7.89 -2.39 -0.02 1.19 16 35 H 0.08 1.68 5.27 -2.38 -0.01 1.67 16 36 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.40 4.18 9.12 -74.06 -0.68 3.50 16 40 H 0.08 1.82 7.36 -2.38 -0.02 1.80 16 41 H 0.13 1.42 7.84 -2.39 -0.02 1.40 16 42 H 0.15 1.67 7.73 -2.91 -0.02 1.64 16 43 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 44 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 45 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 46 H 0.11 3.16 7.58 -2.91 -0.02 3.13 16 Total: -1.00 -74.23 387.96 -0.44 -74.67 By element: Atomic # 1 Polarization: 51.89 SS G_CDS: -0.85 Total: 51.04 kcal Atomic # 6 Polarization: 18.64 SS G_CDS: 6.54 Total: 25.18 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -6.01 Total: -123.97 kcal Atomic # 8 Polarization: -68.78 SS G_CDS: -2.14 Total: -70.92 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -74.23 -0.44 -74.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358299018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.804 kcal (2) G-P(sol) polarization free energy of solvation -74.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds