Wall clock time and date at job start Tue Mar 31 2020 18:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48499 * 109.46761 * 269.99524 * 3 2 1 5 5 H 1.48497 * 109.47109 * 29.99600 * 3 2 1 6 6 H 1.48494 * 109.47041 * 149.99505 * 3 2 1 7 7 C 1.38814 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99738 * 163.07828 * 7 2 1 9 9 N 1.36934 * 120.00215 * 343.08557 * 7 2 1 10 10 C 1.46920 * 120.63251 * 331.82044 * 9 7 2 11 11 C 1.53187 * 108.78015 * 233.61488 * 10 9 7 12 12 C 1.53041 * 109.31014 * 305.36180 * 11 10 9 13 13 C 1.53043 * 109.53764 * 61.36638 * 12 11 10 14 14 H 1.09004 * 109.49617 * 58.61938 * 13 12 11 15 15 C 1.52999 * 109.50149 * 178.68247 * 13 12 11 16 16 N 1.46494 * 109.47472 * 185.00230 * 15 13 12 17 17 C 1.34779 * 120.00225 * 180.02562 * 16 15 13 18 18 O 1.21281 * 119.99609 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99874 * 179.97438 * 17 16 15 20 20 N 1.46504 * 109.46910 * 179.97438 * 19 17 16 21 21 C 1.34777 * 119.99741 * 179.97438 * 20 19 17 22 22 O 1.21688 * 120.00231 * 359.72730 * 21 20 19 23 23 C 1.46656 * 119.99762 * 180.02562 * 21 20 19 24 24 C 1.36537 * 125.99031 * 179.73030 * 23 21 20 25 25 C 1.40367 * 106.71395 * 179.97438 * 24 23 21 26 26 C 1.35131 * 107.10983 * 359.97438 * 25 24 23 27 27 O 1.33932 * 108.76833 * 359.77213 * 26 25 24 28 28 C 1.46933 * 120.63113 * 151.82648 * 9 7 2 29 29 H 0.96999 * 120.00219 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.58906 * 113.82031 * 10 9 7 31 31 H 1.09000 * 109.58820 * 353.40428 * 10 9 7 32 32 H 1.08999 * 109.49963 * 185.41924 * 11 10 9 33 33 H 1.08992 * 109.50231 * 65.31211 * 11 10 9 34 34 H 1.08996 * 109.46664 * 301.34546 * 12 11 10 35 35 H 1.09005 * 109.45006 * 181.37790 * 12 11 10 36 36 H 1.09000 * 109.46792 * 64.99755 * 15 13 12 37 37 H 1.09007 * 109.46769 * 305.00261 * 15 13 12 38 38 H 0.97004 * 119.99947 * 359.97438 * 16 15 13 39 39 H 1.09000 * 109.47551 * 59.99985 * 19 17 16 40 40 H 1.09004 * 109.47022 * 299.99321 * 19 17 16 41 41 H 0.97001 * 120.00125 * 0.02562 * 20 19 17 42 42 H 1.08004 * 126.64520 * 359.95812 * 24 23 21 43 43 H 1.07998 * 126.44690 * 180.02562 * 25 24 23 44 44 H 1.08004 * 125.61625 * 180.02562 * 26 25 24 45 45 H 1.09004 * 109.58409 * 6.60231 * 28 9 7 46 46 H 1.08997 * 109.58691 * 246.17434 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2717 9 7 1.3699 -2.3623 0.3461 10 6 0.2262 -2.3401 1.2680 11 6 0.4979 -3.3189 2.4145 12 6 0.8124 -4.7006 1.8366 13 6 2.0677 -4.6172 0.9650 14 1 2.9029 -4.2538 1.5639 15 6 2.4002 -6.0053 0.4142 16 7 3.6662 -5.9486 -0.3208 17 6 4.1607 -7.0616 -0.8980 18 8 3.5579 -8.1102 -0.8085 19 6 5.4627 -7.0031 -1.6546 20 7 5.7812 -8.3324 -2.1820 21 6 6.9073 -8.5212 -2.8980 22 8 7.6571 -7.5866 -3.1106 23 6 7.2258 -9.8517 -3.4263 24 6 8.3248 -10.1786 -4.1677 25 6 8.2250 -11.5490 -4.4548 26 6 7.0840 -11.9929 -3.8829 27 8 6.4875 -10.9685 -3.2596 28 6 1.8138 -3.6530 -0.1980 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6771 -2.6408 0.7370 31 1 0.0992 -1.3343 1.6685 32 1 -0.3826 -3.3839 3.0537 33 1 1.3476 -2.9673 2.9995 34 1 -0.0277 -5.0411 1.2314 35 1 0.9821 -5.4048 2.6512 36 1 1.6048 -6.3301 -0.2566 37 1 2.4906 -6.7116 1.2395 38 1 4.1482 -5.1099 -0.3927 39 1 6.2584 -6.6785 -0.9841 40 1 5.3720 -6.2967 -2.4798 41 1 5.1812 -9.0764 -2.0164 42 1 9.1173 -9.5119 -4.4741 43 1 8.9282 -12.1379 -5.0249 44 1 6.7160 -13.0077 -3.9186 45 1 2.7345 -3.5135 -0.7646 46 1 1.0401 -4.0608 -0.8485 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359391084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:23 Heat of formation + Delta-G solvation = -41.287786 kcal Electronic energy + Delta-G solvation = -27926.100422 eV Core-core repulsion = 23817.856315 eV Total energy + Delta-G solvation = -4108.244107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.05614 -40.32797 -39.29482 -37.87139 -35.18281 -34.71367 -33.43156 -33.08996 -30.97334 -30.49121 -30.35901 -28.15574 -25.42106 -25.15167 -23.35705 -22.19155 -22.11041 -21.07118 -20.73428 -20.62295 -19.33955 -18.94316 -17.21626 -16.82312 -16.78054 -16.60826 -16.18452 -16.03580 -15.42624 -14.99259 -14.84314 -14.43686 -14.30065 -13.80279 -13.52103 -13.48722 -13.40381 -13.29430 -13.06280 -12.98622 -12.82203 -12.39973 -12.23414 -12.19387 -11.34940 -11.05423 -10.75952 -10.71951 -10.55569 -10.46850 -10.30373 -10.24191 -10.15859 -9.94868 -9.63633 -9.62289 -9.47336 -9.11803 -9.05592 -8.50311 -6.71333 -5.82984 -3.26179 0.67352 1.95441 2.22710 2.40254 2.66226 2.82549 3.25861 3.34532 3.42009 3.43631 4.27180 4.44217 4.48812 4.49704 4.64589 5.01383 5.03333 5.07578 5.22744 5.23977 5.36318 5.37646 5.40616 5.49126 5.56569 5.76228 5.80858 5.87964 5.90152 5.93717 6.16834 6.24046 6.31503 6.35854 6.41118 6.53843 6.64720 6.71349 6.80600 6.90294 7.09439 7.34517 7.36133 7.63330 7.70013 7.74819 8.00323 8.40496 9.16690 9.80082 10.36765 11.25314 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.001991 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.066177 B =14056.504527 C =15310.223715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.074 0.926 15 C 0.127 3.873 16 N -0.715 5.715 17 C 0.508 3.492 18 O -0.544 6.544 19 C 0.097 3.903 20 N -0.706 5.706 21 C 0.606 3.394 22 O -0.520 6.520 23 C -0.079 4.079 24 C -0.118 4.118 25 C -0.227 4.227 26 C -0.004 4.004 27 O -0.162 6.162 28 C 0.153 3.847 29 H 0.254 0.746 30 H 0.017 0.983 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.407 0.593 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.417 0.583 42 H 0.162 0.838 43 H 0.158 0.842 44 H 0.211 0.789 45 H 0.051 0.949 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.995 -21.813 -3.610 25.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.093 0.907 15 C 0.004 3.996 16 N -0.366 5.366 17 C 0.293 3.707 18 O -0.422 6.422 19 C -0.030 4.030 20 N -0.361 5.361 21 C 0.392 3.608 22 O -0.397 6.397 23 C -0.131 4.131 24 C -0.139 4.139 25 C -0.246 4.246 26 C -0.074 4.074 27 O -0.057 6.057 28 C 0.026 3.974 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.243 0.757 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.256 0.744 42 H 0.179 0.821 43 H 0.175 0.825 44 H 0.228 0.772 45 H 0.069 0.931 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.658 -21.685 -3.502 24.868 hybrid contribution 0.466 0.822 -0.107 0.951 sum 12.124 -20.863 -3.609 24.399 Atomic orbital electron populations 1.70034 1.05293 1.25561 1.53628 1.25056 0.95282 0.98466 1.00789 0.86315 0.79165 0.83655 0.77739 1.21369 1.21558 1.20470 1.19136 0.92478 0.84789 1.42052 0.91742 1.44027 1.35919 1.01298 1.50081 1.20796 0.88547 0.98310 0.88019 1.22173 1.00143 0.95937 0.99865 1.21339 0.96678 0.97802 0.97937 1.21974 0.98976 0.93451 0.99509 0.90743 1.21525 0.84373 0.98286 0.95461 1.45976 1.24980 1.11556 1.54100 1.20369 0.86602 0.84266 0.79499 1.90698 1.60780 1.29849 1.60880 1.21168 0.95894 0.86049 0.99877 1.45570 1.24151 1.12376 1.53979 1.16469 0.81238 0.84976 0.78139 1.90910 1.49695 1.40129 1.59002 1.21961 0.95637 0.86826 1.08634 1.22003 0.97915 0.96084 0.97870 1.21890 1.00319 0.95385 1.07001 1.24471 0.94126 0.92511 0.96286 1.84101 1.45775 1.16481 1.59335 1.20909 0.97524 0.86905 0.92048 0.93597 0.96441 0.89564 0.93154 0.92721 0.92456 0.93431 0.91329 0.91741 0.75710 0.87751 0.87562 0.74402 0.82077 0.82478 0.77226 0.93096 0.96343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.68 11.20 55.49 0.62 -25.06 16 2 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.26 -6.73 9.58 -15.06 -0.14 -6.87 16 8 H 0.06 1.65 7.89 -52.49 -0.41 1.24 16 9 N -0.59 -14.09 2.99 -172.32 -0.52 -14.61 16 10 C 0.17 3.89 5.30 -3.72 -0.02 3.87 16 11 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 12 C -0.10 -1.55 5.17 -26.69 -0.14 -1.69 16 13 C -0.12 -1.82 2.37 -90.50 -0.21 -2.03 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 15 C 0.13 1.68 5.07 -4.05 -0.02 1.66 16 16 N -0.71 -8.33 5.33 -60.30 -0.32 -8.65 16 17 C 0.51 6.09 7.90 -10.98 -0.09 6.01 16 18 O -0.54 -8.16 15.67 5.56 0.09 -8.07 16 19 C 0.10 0.97 6.15 -5.19 -0.03 0.94 16 20 N -0.71 -7.63 5.52 -62.80 -0.35 -7.97 16 21 C 0.61 7.14 7.79 -12.86 -0.10 7.04 16 22 O -0.52 -7.38 16.86 5.20 0.09 -7.30 16 23 C -0.08 -0.81 7.13 -36.80 -0.26 -1.07 16 24 C -0.12 -1.05 10.62 -39.39 -0.42 -1.47 16 25 C -0.23 -1.48 10.88 -39.89 -0.43 -1.91 16 26 C 0.00 -0.02 12.08 29.63 0.36 0.33 16 27 O -0.16 -1.47 10.40 4.99 0.05 -1.42 16 28 C 0.15 2.93 5.60 -3.71 -0.02 2.91 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 2.24 6.06 -51.93 -0.31 1.93 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.41 4.17 7.71 -40.82 -0.31 3.86 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.42 4.50 7.19 -40.82 -0.29 4.20 16 42 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.16 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.21 0.40 8.06 -52.48 -0.42 -0.03 16 45 H 0.05 0.92 7.14 -51.93 -0.37 0.55 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 383.55 15.07 5.78 5.78 Total: -1.00 -32.98 383.55 -8.13 -41.10 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.76 Total: 5.03 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -1.78 Total: 4.97 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.56 Total: -56.29 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.23 Total: -16.79 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.98 -8.13 -41.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359391084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.183 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds