Wall clock time and date at job start Tue Mar 31 2020 18:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48499 * 109.46761 * 269.99524 * 3 2 1 5 5 H 1.48497 * 109.47109 * 29.99600 * 3 2 1 6 6 H 1.48494 * 109.47041 * 149.99505 * 3 2 1 7 7 C 1.38814 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99738 * 163.07828 * 7 2 1 9 9 N 1.36934 * 120.00215 * 343.08557 * 7 2 1 10 10 C 1.46920 * 120.63251 * 331.82044 * 9 7 2 11 11 C 1.53187 * 108.78015 * 233.61488 * 10 9 7 12 12 C 1.53041 * 109.31014 * 305.36180 * 11 10 9 13 13 C 1.53043 * 109.53764 * 61.36638 * 12 11 10 14 14 H 1.09004 * 109.49617 * 58.61938 * 13 12 11 15 15 C 1.52999 * 109.50149 * 178.68247 * 13 12 11 16 16 N 1.46494 * 109.47472 * 185.00230 * 15 13 12 17 17 C 1.34779 * 120.00225 * 180.02562 * 16 15 13 18 18 O 1.21281 * 119.99609 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99874 * 179.97438 * 17 16 15 20 20 N 1.46504 * 109.46910 * 179.97438 * 19 17 16 21 21 C 1.34777 * 119.99741 * 179.97438 * 20 19 17 22 22 O 1.21688 * 120.00231 * 359.72730 * 21 20 19 23 23 C 1.46656 * 119.99762 * 180.02562 * 21 20 19 24 24 C 1.36537 * 125.99031 * 179.73030 * 23 21 20 25 25 C 1.40367 * 106.71395 * 179.97438 * 24 23 21 26 26 C 1.35131 * 107.10983 * 359.97438 * 25 24 23 27 27 O 1.33932 * 108.76833 * 359.77213 * 26 25 24 28 28 C 1.46933 * 120.63113 * 151.82648 * 9 7 2 29 29 H 0.96999 * 120.00219 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.58906 * 113.82031 * 10 9 7 31 31 H 1.09000 * 109.58820 * 353.40428 * 10 9 7 32 32 H 1.08999 * 109.49963 * 185.41924 * 11 10 9 33 33 H 1.08992 * 109.50231 * 65.31211 * 11 10 9 34 34 H 1.08996 * 109.46664 * 301.34546 * 12 11 10 35 35 H 1.09005 * 109.45006 * 181.37790 * 12 11 10 36 36 H 1.09000 * 109.46792 * 64.99755 * 15 13 12 37 37 H 1.09007 * 109.46769 * 305.00261 * 15 13 12 38 38 H 0.97004 * 119.99947 * 359.97438 * 16 15 13 39 39 H 1.09000 * 109.47551 * 59.99985 * 19 17 16 40 40 H 1.09004 * 109.47022 * 299.99321 * 19 17 16 41 41 H 0.97001 * 120.00125 * 0.02562 * 20 19 17 42 42 H 1.08004 * 126.64520 * 359.95812 * 24 23 21 43 43 H 1.07998 * 126.44690 * 180.02562 * 25 24 23 44 44 H 1.08004 * 125.61625 * 180.02562 * 26 25 24 45 45 H 1.09004 * 109.58409 * 6.60231 * 28 9 7 46 46 H 1.08997 * 109.58691 * 246.17434 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2717 9 7 1.3699 -2.3623 0.3461 10 6 0.2262 -2.3401 1.2680 11 6 0.4979 -3.3189 2.4145 12 6 0.8124 -4.7006 1.8366 13 6 2.0677 -4.6172 0.9650 14 1 2.9029 -4.2538 1.5639 15 6 2.4002 -6.0053 0.4142 16 7 3.6662 -5.9486 -0.3208 17 6 4.1607 -7.0616 -0.8980 18 8 3.5579 -8.1102 -0.8085 19 6 5.4627 -7.0031 -1.6546 20 7 5.7812 -8.3324 -2.1820 21 6 6.9073 -8.5212 -2.8980 22 8 7.6571 -7.5866 -3.1106 23 6 7.2258 -9.8517 -3.4263 24 6 8.3248 -10.1786 -4.1677 25 6 8.2250 -11.5490 -4.4548 26 6 7.0840 -11.9929 -3.8829 27 8 6.4875 -10.9685 -3.2596 28 6 1.8138 -3.6530 -0.1980 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6771 -2.6408 0.7370 31 1 0.0992 -1.3343 1.6685 32 1 -0.3826 -3.3839 3.0537 33 1 1.3476 -2.9673 2.9995 34 1 -0.0277 -5.0411 1.2314 35 1 0.9821 -5.4048 2.6512 36 1 1.6048 -6.3301 -0.2566 37 1 2.4906 -6.7116 1.2395 38 1 4.1482 -5.1099 -0.3927 39 1 6.2584 -6.6785 -0.9841 40 1 5.3720 -6.2967 -2.4798 41 1 5.1812 -9.0764 -2.0164 42 1 9.1173 -9.5119 -4.4741 43 1 8.9282 -12.1379 -5.0249 44 1 6.7160 -13.0077 -3.9186 45 1 2.7345 -3.5135 -0.7646 46 1 1.0401 -4.0608 -0.8485 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359391084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:23 Heat of formation + Delta-G solvation = -64.791528 kcal Electronic energy + Delta-G solvation = -27927.119621 eV Core-core repulsion = 23817.856315 eV Total energy + Delta-G solvation = -4109.263306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.65439 -41.28662 -40.27699 -39.32142 -36.41176 -35.70383 -34.70382 -34.03531 -32.30860 -32.16849 -31.26113 -29.07581 -27.23505 -26.42048 -24.15545 -23.78489 -22.73166 -22.49978 -21.69337 -21.44646 -20.64771 -19.86313 -18.67744 -17.89369 -17.66293 -17.49745 -17.04742 -16.94560 -16.75848 -16.34761 -16.07068 -15.69274 -15.39412 -15.26047 -15.02692 -14.52265 -14.31205 -14.12796 -14.01219 -13.99491 -13.93101 -13.73875 -13.55805 -13.35702 -12.99954 -12.87314 -12.49390 -12.26911 -11.97652 -11.80963 -11.65598 -11.56917 -11.39970 -11.11213 -11.05685 -11.00714 -10.52662 -10.49648 -10.12620 -9.67435 -8.66083 -7.86135 -5.31606 -0.01154 1.40912 1.44751 1.47112 1.49034 1.50096 1.57990 1.93351 2.02983 2.37950 2.51763 3.29021 3.52588 3.61708 3.73142 3.95530 4.00179 4.02584 4.08169 4.11179 4.25960 4.31740 4.42458 4.58459 4.61344 4.62452 4.78104 4.89433 4.90194 4.91599 4.94728 5.00067 5.03286 5.12478 5.22226 5.34205 5.37412 5.39318 5.46704 5.58672 5.68299 5.79893 5.80759 6.27591 6.38861 6.41885 6.84864 7.05362 7.16201 7.87959 8.39557 9.20047 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.001991 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.066177 B =14056.504527 C =15310.223715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.054 4.054 3 Si 0.965 3.035 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.259 4.259 8 H 0.071 0.929 9 N -0.609 5.609 10 C 0.173 3.827 11 C -0.131 4.131 12 C -0.097 4.097 13 C -0.101 4.101 14 H 0.079 0.921 15 C 0.138 3.862 16 N -0.710 5.710 17 C 0.513 3.487 18 O -0.573 6.573 19 C 0.100 3.900 20 N -0.704 5.704 21 C 0.605 3.395 22 O -0.554 6.554 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.234 4.234 26 C 0.010 3.990 27 O -0.175 6.175 28 C 0.150 3.850 29 H 0.248 0.752 30 H -0.008 1.008 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.416 0.584 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.418 0.582 42 H 0.162 0.838 43 H 0.185 0.815 44 H 0.254 0.746 45 H 0.059 0.941 46 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.615 -24.094 -3.339 27.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.249 4.249 3 Si 0.793 3.207 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.389 4.389 8 H 0.089 0.911 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.170 4.170 12 C -0.135 4.135 13 C -0.121 4.121 14 H 0.097 0.903 15 C 0.014 3.986 16 N -0.362 5.362 17 C 0.300 3.700 18 O -0.453 6.453 19 C -0.027 4.027 20 N -0.358 5.358 21 C 0.393 3.607 22 O -0.434 6.434 23 C -0.166 4.166 24 C -0.141 4.141 25 C -0.253 4.253 26 C -0.059 4.059 27 O -0.070 6.070 28 C 0.024 3.976 29 H 0.057 0.943 30 H 0.010 0.990 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.253 0.747 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.256 0.744 42 H 0.180 0.820 43 H 0.202 0.798 44 H 0.270 0.730 45 H 0.078 0.922 46 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 13.296 -23.984 -3.222 27.611 hybrid contribution -0.042 1.407 -0.259 1.431 sum 13.253 -22.577 -3.481 26.410 Atomic orbital electron populations 1.70195 1.06737 1.25719 1.55607 1.25810 0.95997 1.01572 1.01540 0.85318 0.78173 0.79731 0.77472 1.21333 1.22232 1.19279 1.19528 0.92933 0.85887 1.40561 0.91088 1.44302 1.35859 1.02302 1.50772 1.20625 0.87694 0.97736 0.89259 1.22000 1.00935 0.96038 0.97990 1.21338 0.96596 0.96678 0.98908 1.21727 0.99129 0.93494 0.97776 0.90302 1.21314 0.84768 0.96795 0.95718 1.45898 1.24519 1.11970 1.53773 1.20583 0.86799 0.83664 0.78988 1.90688 1.61732 1.30929 1.61998 1.21224 0.95184 0.86037 1.00216 1.45580 1.23897 1.12608 1.53693 1.16659 0.80888 0.85412 0.77722 1.90875 1.50698 1.41368 1.60477 1.21761 0.96988 0.86922 1.10908 1.22287 0.97329 0.97506 0.96976 1.22245 1.01196 0.94391 1.07422 1.25420 0.93394 0.93209 0.93875 1.84093 1.46163 1.16749 1.60007 1.21066 0.97230 0.85732 0.93531 0.94266 0.99022 0.93170 0.91366 0.92794 0.92671 0.90068 0.92192 0.90507 0.74745 0.86180 0.86718 0.74382 0.82004 0.79769 0.73037 0.92250 0.97617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.14 11.20 21.65 0.24 -54.90 16 2 C -0.05 -2.97 4.92 84.86 0.42 -2.56 16 3 Si 0.96 44.22 29.59 68.60 2.03 46.25 16 4 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.26 -13.73 9.58 84.03 0.81 -12.92 16 8 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 9 N -0.61 -29.26 2.99 -699.10 -2.09 -31.35 16 10 C 0.17 8.13 5.30 86.36 0.46 8.59 16 11 C -0.13 -4.59 6.08 30.67 0.19 -4.40 16 12 C -0.10 -2.80 5.17 30.62 0.16 -2.64 16 13 C -0.10 -2.89 2.37 -10.72 -0.03 -2.91 16 14 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 15 C 0.14 3.34 5.07 86.38 0.44 3.78 16 16 N -0.71 -15.17 5.33 -463.06 -2.47 -17.64 16 17 C 0.51 11.58 7.90 87.66 0.69 12.28 16 18 O -0.57 -16.51 15.67 -3.03 -0.05 -16.56 16 19 C 0.10 1.89 6.15 85.63 0.53 2.42 16 20 N -0.70 -14.93 5.52 -470.83 -2.60 -17.53 16 21 C 0.61 14.33 7.79 86.44 0.67 15.00 16 22 O -0.55 -15.93 16.86 -4.31 -0.07 -16.00 16 23 C -0.11 -2.33 7.13 24.07 0.17 -2.16 16 24 C -0.12 -2.04 10.62 22.39 0.24 -1.80 16 25 C -0.23 -2.49 10.88 22.07 0.24 -2.25 16 26 C 0.01 0.10 12.08 67.10 0.81 0.91 16 27 O -0.17 -2.95 10.40 -5.07 -0.05 -3.01 16 28 C 0.15 5.65 5.60 86.36 0.48 6.13 16 29 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 30 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 31 H 0.05 2.71 6.06 -2.39 -0.01 2.69 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.42 7.65 7.71 -92.71 -0.71 6.93 16 39 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.42 8.87 7.19 -92.71 -0.67 8.20 16 42 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 43 H 0.18 0.84 8.06 -2.91 -0.02 0.81 16 44 H 0.25 -0.12 8.06 -2.91 -0.02 -0.15 16 45 H 0.06 2.09 7.14 -2.38 -0.02 2.08 16 46 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 Total: -1.00 -73.53 383.55 0.84 -72.69 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -0.37 Total: 20.58 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 6.27 Total: 17.46 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -6.92 Total: -121.42 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -0.17 Total: -35.57 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -73.53 0.84 -72.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359391084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.902 kcal (2) G-P(sol) polarization free energy of solvation -73.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds