Wall clock time and date at job start Tue Mar 31 2020 18:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99934 * 2 1 4 4 H 1.48503 * 109.46739 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47293 * 299.99977 * 3 2 1 6 6 H 1.48502 * 109.47200 * 60.00215 * 3 2 1 7 7 C 1.38813 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00150 * 163.06899 * 7 2 1 9 9 N 1.36941 * 119.99737 * 343.07158 * 7 2 1 10 10 C 1.46928 * 120.63084 * 331.84397 * 9 7 2 11 11 C 1.53184 * 108.77766 * 233.58741 * 10 9 7 12 12 C 1.53045 * 109.31413 * 305.36966 * 11 10 9 13 13 C 1.53001 * 109.45722 * 181.38631 * 12 11 10 14 14 N 1.46501 * 109.46663 * 174.97306 * 13 12 11 15 15 C 1.34784 * 119.99986 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99409 * 359.97438 * 15 14 13 17 17 C 1.50690 * 120.00013 * 179.97438 * 15 14 13 18 18 N 1.46503 * 109.46991 * 179.97438 * 17 15 14 19 19 C 1.34784 * 119.99964 * 180.02562 * 18 17 15 20 20 O 1.21696 * 119.99790 * 0.02562 * 19 18 17 21 21 C 1.46654 * 120.00003 * 180.02562 * 19 18 17 22 22 C 1.36543 * 125.98717 * 179.97438 * 21 19 18 23 23 C 1.40365 * 106.70757 * 180.02562 * 22 21 19 24 24 C 1.35131 * 107.11390 * 359.97438 * 23 22 21 25 25 O 1.33933 * 108.76871 * 0.02562 * 24 23 22 26 26 C 1.53039 * 109.52695 * 61.36849 * 12 11 10 27 27 C 1.46927 * 120.62746 * 151.82776 * 9 7 2 28 28 H 0.97003 * 119.99747 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.58146 * 113.80151 * 10 9 7 30 30 H 1.08993 * 109.70439 * 353.45184 * 10 9 7 31 31 H 1.08997 * 109.50117 * 185.41364 * 11 10 9 32 32 H 1.09004 * 109.52198 * 65.33716 * 11 10 9 33 33 H 1.08998 * 109.45435 * 301.35532 * 12 11 10 34 34 H 1.08989 * 109.47590 * 54.97161 * 13 12 11 35 35 H 1.09004 * 109.47146 * 294.96605 * 13 12 11 36 36 H 0.96997 * 120.00557 * 0.02562 * 14 13 12 37 37 H 1.09002 * 109.47530 * 60.00376 * 17 15 14 38 38 H 1.08999 * 109.47795 * 300.00133 * 17 15 14 39 39 H 0.96994 * 120.00061 * 0.02562 * 18 17 15 40 40 H 1.07993 * 126.64593 * 0.02562 * 22 21 19 41 41 H 1.07996 * 126.44269 * 179.97438 * 23 22 21 42 42 H 1.08004 * 125.61764 * 180.26323 * 24 23 22 43 43 H 1.09007 * 109.49803 * 58.58242 * 26 12 11 44 44 H 1.09001 * 109.49747 * 178.67307 * 26 12 11 45 45 H 1.09003 * 109.58215 * 246.19307 * 27 9 7 46 46 H 1.08994 * 109.58927 * 6.48074 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2226 -0.2718 9 7 1.3701 -2.3622 0.3464 10 6 0.2261 -2.3398 1.2681 11 6 0.4974 -3.3187 2.4147 12 6 0.8120 -4.7005 1.8368 13 6 1.0496 -5.6891 2.9801 14 7 1.2320 -7.0352 2.4316 15 6 1.4573 -8.0752 3.2588 16 8 1.5095 -7.8964 4.4573 17 6 1.6443 -9.4599 2.6947 18 7 1.8732 -10.4064 3.7893 19 6 2.0681 -11.7128 3.5210 20 8 2.0545 -12.1060 2.3694 21 6 2.2967 -12.6603 4.6167 22 6 2.5064 -14.0031 4.4857 23 6 2.6768 -14.5134 5.7821 24 6 2.5656 -13.4727 6.6369 25 8 2.3364 -12.3578 5.9309 26 6 2.0675 -4.6169 0.9657 27 6 1.8139 -3.6529 -0.1976 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6770 -2.6404 0.7370 30 1 0.0967 -1.3345 1.6688 31 1 -0.3831 -3.3835 3.0539 32 1 1.3470 -2.9673 3.0004 33 1 -0.0281 -5.0406 1.2313 34 1 0.1901 -5.6831 3.6502 35 1 1.9430 -5.3978 3.5325 36 1 1.1913 -7.1781 1.4730 37 1 2.5035 -9.4661 2.0240 38 1 0.7506 -9.7513 2.1429 39 1 1.8844 -10.0929 4.7071 40 1 2.5355 -14.5640 3.5632 41 1 2.8619 -15.5439 6.0468 42 1 2.6516 -13.5298 7.7120 43 1 2.9024 -4.2529 1.5646 44 1 2.3046 -5.6058 0.5734 45 1 1.0401 -4.0607 -0.8482 46 1 2.7332 -3.5132 -0.7662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359851545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:13 Heat of formation + Delta-G solvation = -40.843358 kcal Electronic energy + Delta-G solvation = -27691.131599 eV Core-core repulsion = 23582.906764 eV Total energy + Delta-G solvation = -4108.224835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.10612 -40.40984 -39.37123 -37.89926 -35.29063 -34.81675 -33.48256 -32.98244 -31.04931 -30.64470 -29.81050 -28.49032 -26.47324 -24.13088 -23.34136 -22.29833 -22.16836 -21.15262 -20.80973 -20.69953 -19.36180 -19.02943 -17.27220 -16.84964 -16.82712 -16.74783 -16.26794 -16.09230 -15.50379 -14.97901 -14.84090 -14.49484 -14.10880 -13.78578 -13.58844 -13.53853 -13.45635 -13.36592 -13.26121 -13.10981 -12.86849 -12.41201 -12.37492 -11.91883 -11.38447 -11.02554 -10.81217 -10.75845 -10.55158 -10.51660 -10.34521 -10.25504 -10.19509 -9.93052 -9.71216 -9.60147 -9.48484 -9.18496 -9.11457 -8.49587 -6.69509 -5.81402 -3.23896 0.61763 1.90594 2.16770 2.31893 2.59509 2.75936 3.17355 3.35503 3.43763 3.45782 4.21355 4.40007 4.44830 4.47795 4.58923 4.92470 4.96131 5.02921 5.15745 5.17488 5.31577 5.31858 5.38155 5.44213 5.55322 5.74934 5.79135 5.85298 5.85440 5.97549 6.06426 6.26607 6.27901 6.35823 6.39941 6.55668 6.63295 6.71405 6.77028 6.93873 7.02192 7.24808 7.34399 7.62443 7.62960 7.77834 7.92035 8.42965 9.19271 9.82674 10.39090 11.27133 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.038419 B = 0.001640 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.633929 B =17069.641442 C =17299.403523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.091 4.091 13 C 0.123 3.877 14 N -0.716 5.716 15 C 0.506 3.494 16 O -0.541 6.541 17 C 0.098 3.902 18 N -0.707 5.707 19 C 0.606 3.394 20 O -0.521 6.521 21 C -0.080 4.080 22 C -0.117 4.117 23 C -0.227 4.227 24 C -0.003 4.003 25 O -0.162 6.162 26 C -0.128 4.128 27 C 0.145 3.855 28 H 0.253 0.747 29 H 0.018 0.982 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.405 0.595 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.418 0.582 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.212 0.788 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.016 0.984 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.949 -26.363 10.867 28.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.173 4.173 12 C -0.110 4.110 13 C 0.000 4.000 14 N -0.368 5.368 15 C 0.291 3.709 16 O -0.419 6.419 17 C -0.029 4.029 18 N -0.361 5.361 19 C 0.393 3.607 20 O -0.399 6.399 21 C -0.132 4.132 22 C -0.138 4.138 23 C -0.246 4.246 24 C -0.073 4.073 25 O -0.057 6.057 26 C -0.167 4.167 27 C 0.018 3.982 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.240 0.760 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.256 0.744 40 H 0.179 0.821 41 H 0.175 0.825 42 H 0.228 0.772 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.034 0.966 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.824 -25.984 10.982 28.351 hybrid contribution 0.395 0.718 0.012 0.819 sum 3.219 -25.266 10.994 27.742 Atomic orbital electron populations 1.70038 1.05266 1.25402 1.54035 1.25046 0.95285 0.98424 1.00894 0.86241 0.79386 0.83971 0.77280 1.20265 1.21731 1.21553 1.19228 0.92564 0.84841 1.41556 0.91693 1.44056 1.35894 1.01523 1.50036 1.20758 0.88625 0.98165 0.87889 1.22180 1.00377 0.94578 1.00123 1.21328 0.98881 0.95392 0.95355 1.21655 1.01741 0.79722 0.96874 1.46001 1.72066 1.08109 1.10581 1.20391 0.76877 0.86493 0.87152 1.90714 1.51044 1.85098 1.15032 1.21154 1.04739 0.86695 0.90318 1.45576 1.72307 1.06575 1.11666 1.16470 0.77008 0.80915 0.86333 1.90905 1.51836 1.78065 1.19049 1.21940 1.14031 0.95418 0.81804 1.22001 0.99792 0.92499 0.99488 1.21893 1.09314 1.01050 0.92351 1.24485 1.01440 0.83056 0.98300 1.84102 1.68962 1.35513 1.17116 1.22085 0.96958 0.98777 0.98879 1.20890 0.97588 0.87027 0.92672 0.93682 0.96429 0.89390 0.93044 0.92371 0.91173 0.91535 0.91352 0.76027 0.87730 0.87764 0.74352 0.82075 0.82451 0.77195 0.92140 0.93429 0.96569 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.82 11.19 55.49 0.62 -25.20 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.32 2.99 -172.32 -0.52 -14.84 16 10 C 0.17 3.92 5.30 -3.71 -0.02 3.90 16 11 C -0.13 -2.35 5.36 -26.61 -0.14 -2.49 16 12 C -0.09 -1.33 2.19 -90.58 -0.20 -1.53 16 13 C 0.12 1.58 5.06 -4.04 -0.02 1.56 16 14 N -0.72 -7.48 5.27 -60.30 -0.32 -7.79 16 15 C 0.51 5.62 7.90 -10.99 -0.09 5.53 16 16 O -0.54 -7.86 15.67 5.55 0.09 -7.77 16 17 C 0.10 0.87 6.15 -5.20 -0.03 0.84 16 18 N -0.71 -7.06 5.52 -62.81 -0.35 -7.40 16 19 C 0.61 6.65 7.79 -12.86 -0.10 6.55 16 20 O -0.52 -6.89 16.86 5.19 0.09 -6.80 16 21 C -0.08 -0.78 7.13 -36.80 -0.26 -1.04 16 22 C -0.12 -0.97 10.62 -39.39 -0.42 -1.39 16 23 C -0.23 -1.36 10.87 -39.89 -0.43 -1.80 16 24 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 25 O -0.16 -1.39 10.40 5.00 0.05 -1.34 16 26 C -0.13 -1.97 5.25 -26.61 -0.14 -2.11 16 27 C 0.14 2.85 6.52 -3.71 -0.02 2.83 16 28 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 2.29 6.07 -51.93 -0.31 1.97 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.88 8.14 -51.94 -0.42 0.46 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.40 3.34 7.65 -40.82 -0.31 3.02 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.42 4.24 7.19 -40.82 -0.29 3.95 16 40 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.21 0.32 8.06 -52.48 -0.42 -0.10 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.59 7.15 -51.93 -0.37 0.22 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -33.36 383.32 -8.09 -41.45 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.75 Total: 3.29 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -1.75 Total: 4.22 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.56 Total: -55.24 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.23 Total: -15.92 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.36 -8.09 -41.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359851545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.605 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds