Wall clock time and date at job start Tue Mar 31 2020 18:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99934 * 2 1 4 4 H 1.48503 * 109.46739 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47293 * 299.99977 * 3 2 1 6 6 H 1.48502 * 109.47200 * 60.00215 * 3 2 1 7 7 C 1.38813 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00150 * 163.06899 * 7 2 1 9 9 N 1.36941 * 119.99737 * 343.07158 * 7 2 1 10 10 C 1.46928 * 120.63084 * 331.84397 * 9 7 2 11 11 C 1.53184 * 108.77766 * 233.58741 * 10 9 7 12 12 C 1.53045 * 109.31413 * 305.36966 * 11 10 9 13 13 C 1.53001 * 109.45722 * 181.38631 * 12 11 10 14 14 N 1.46501 * 109.46663 * 174.97306 * 13 12 11 15 15 C 1.34784 * 119.99986 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99409 * 359.97438 * 15 14 13 17 17 C 1.50690 * 120.00013 * 179.97438 * 15 14 13 18 18 N 1.46503 * 109.46991 * 179.97438 * 17 15 14 19 19 C 1.34784 * 119.99964 * 180.02562 * 18 17 15 20 20 O 1.21696 * 119.99790 * 0.02562 * 19 18 17 21 21 C 1.46654 * 120.00003 * 180.02562 * 19 18 17 22 22 C 1.36543 * 125.98717 * 179.97438 * 21 19 18 23 23 C 1.40365 * 106.70757 * 180.02562 * 22 21 19 24 24 C 1.35131 * 107.11390 * 359.97438 * 23 22 21 25 25 O 1.33933 * 108.76871 * 0.02562 * 24 23 22 26 26 C 1.53039 * 109.52695 * 61.36849 * 12 11 10 27 27 C 1.46927 * 120.62746 * 151.82776 * 9 7 2 28 28 H 0.97003 * 119.99747 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.58146 * 113.80151 * 10 9 7 30 30 H 1.08993 * 109.70439 * 353.45184 * 10 9 7 31 31 H 1.08997 * 109.50117 * 185.41364 * 11 10 9 32 32 H 1.09004 * 109.52198 * 65.33716 * 11 10 9 33 33 H 1.08998 * 109.45435 * 301.35532 * 12 11 10 34 34 H 1.08989 * 109.47590 * 54.97161 * 13 12 11 35 35 H 1.09004 * 109.47146 * 294.96605 * 13 12 11 36 36 H 0.96997 * 120.00557 * 0.02562 * 14 13 12 37 37 H 1.09002 * 109.47530 * 60.00376 * 17 15 14 38 38 H 1.08999 * 109.47795 * 300.00133 * 17 15 14 39 39 H 0.96994 * 120.00061 * 0.02562 * 18 17 15 40 40 H 1.07993 * 126.64593 * 0.02562 * 22 21 19 41 41 H 1.07996 * 126.44269 * 179.97438 * 23 22 21 42 42 H 1.08004 * 125.61764 * 180.26323 * 24 23 22 43 43 H 1.09007 * 109.49803 * 58.58242 * 26 12 11 44 44 H 1.09001 * 109.49747 * 178.67307 * 26 12 11 45 45 H 1.09003 * 109.58215 * 246.19307 * 27 9 7 46 46 H 1.08994 * 109.58927 * 6.48074 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2226 -0.2718 9 7 1.3701 -2.3622 0.3464 10 6 0.2261 -2.3398 1.2681 11 6 0.4974 -3.3187 2.4147 12 6 0.8120 -4.7005 1.8368 13 6 1.0496 -5.6891 2.9801 14 7 1.2320 -7.0352 2.4316 15 6 1.4573 -8.0752 3.2588 16 8 1.5095 -7.8964 4.4573 17 6 1.6443 -9.4599 2.6947 18 7 1.8732 -10.4064 3.7893 19 6 2.0681 -11.7128 3.5210 20 8 2.0545 -12.1060 2.3694 21 6 2.2967 -12.6603 4.6167 22 6 2.5064 -14.0031 4.4857 23 6 2.6768 -14.5134 5.7821 24 6 2.5656 -13.4727 6.6369 25 8 2.3364 -12.3578 5.9309 26 6 2.0675 -4.6169 0.9657 27 6 1.8139 -3.6529 -0.1976 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6770 -2.6404 0.7370 30 1 0.0967 -1.3345 1.6688 31 1 -0.3831 -3.3835 3.0539 32 1 1.3470 -2.9673 3.0004 33 1 -0.0281 -5.0406 1.2313 34 1 0.1901 -5.6831 3.6502 35 1 1.9430 -5.3978 3.5325 36 1 1.1913 -7.1781 1.4730 37 1 2.5035 -9.4661 2.0240 38 1 0.7506 -9.7513 2.1429 39 1 1.8844 -10.0929 4.7071 40 1 2.5355 -14.5640 3.5632 41 1 2.8619 -15.5439 6.0468 42 1 2.6516 -13.5298 7.7120 43 1 2.9024 -4.2529 1.5646 44 1 2.3046 -5.6058 0.5734 45 1 1.0401 -4.0607 -0.8482 46 1 2.7332 -3.5132 -0.7662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359851545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:12 Heat of formation + Delta-G solvation = -64.798426 kcal Electronic energy + Delta-G solvation = -27692.170369 eV Core-core repulsion = 23582.906764 eV Total energy + Delta-G solvation = -4109.263605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.65324 -41.28950 -40.27649 -39.31987 -36.53764 -35.71003 -34.53736 -34.03354 -32.61894 -31.51852 -31.27213 -29.46421 -27.83370 -25.67424 -24.17163 -23.76061 -22.74541 -22.59352 -21.68732 -21.43705 -20.69282 -19.89644 -18.69573 -17.92709 -17.67551 -17.49179 -17.02941 -16.91304 -16.80947 -16.32742 -15.88380 -15.64891 -15.32886 -15.29370 -15.03839 -14.77479 -14.35020 -14.12795 -14.02105 -13.93069 -13.87888 -13.76699 -13.55798 -13.31454 -13.00366 -12.79954 -12.58837 -12.23786 -11.99377 -11.83419 -11.65792 -11.60457 -11.32996 -11.10601 -11.05473 -11.01708 -10.53681 -10.48886 -10.13234 -9.67210 -8.65828 -7.87147 -5.31838 -0.00865 1.41122 1.45051 1.45363 1.47622 1.50529 1.57496 1.93282 2.03490 2.37448 2.51317 3.27503 3.53865 3.72412 3.72857 3.85698 3.95578 3.95825 4.09599 4.11370 4.27576 4.32234 4.53227 4.55829 4.61744 4.70859 4.74421 4.81236 4.90161 4.94897 4.95317 5.01248 5.04478 5.15411 5.29620 5.30806 5.35321 5.39344 5.45016 5.56706 5.67106 5.80354 5.81102 6.27504 6.40473 6.42192 6.85083 7.07931 7.16636 7.89292 8.39326 9.18938 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.038419 B = 0.001640 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.633929 B =17069.641442 C =17299.403523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.261 4.261 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.177 3.823 11 C -0.122 4.122 12 C -0.079 4.079 13 C 0.137 3.863 14 N -0.706 5.706 15 C 0.511 3.489 16 O -0.576 6.576 17 C 0.101 3.899 18 N -0.706 5.706 19 C 0.606 3.394 20 O -0.552 6.552 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.234 4.234 24 C 0.009 3.991 25 O -0.175 6.175 26 C -0.115 4.115 27 C 0.138 3.862 28 H 0.249 0.751 29 H -0.002 1.002 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.418 0.582 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.417 0.583 40 H 0.163 0.837 41 H 0.185 0.815 42 H 0.252 0.748 43 H 0.050 0.950 44 H 0.087 0.913 45 H 0.018 0.982 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.859 -28.627 11.913 31.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.336 5.336 10 C 0.051 3.949 11 C -0.162 4.162 12 C -0.098 4.098 13 C 0.013 3.987 14 N -0.358 5.358 15 C 0.298 3.702 16 O -0.456 6.456 17 C -0.025 4.025 18 N -0.359 5.359 19 C 0.394 3.606 20 O -0.433 6.433 21 C -0.166 4.166 22 C -0.140 4.140 23 C -0.253 4.253 24 C -0.060 4.060 25 O -0.071 6.071 26 C -0.154 4.154 27 C 0.013 3.987 28 H 0.058 0.942 29 H 0.016 0.984 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.256 0.744 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.255 0.745 40 H 0.181 0.819 41 H 0.202 0.798 42 H 0.268 0.732 43 H 0.069 0.931 44 H 0.106 0.894 45 H 0.036 0.964 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.750 -28.271 12.008 30.944 hybrid contribution 0.120 1.340 -0.283 1.375 sum 3.869 -26.931 11.725 29.627 Atomic orbital electron populations 1.70181 1.06589 1.25680 1.55636 1.25759 0.96023 1.01380 1.01461 0.85269 0.78657 0.80147 0.76750 1.19202 1.21944 1.21764 1.19540 0.92775 0.86238 1.40573 0.91799 1.44339 1.35972 1.02431 1.50848 1.20566 0.87809 0.97523 0.89022 1.21974 1.00907 0.95114 0.98192 1.21157 0.98821 0.93993 0.95807 1.21310 1.01365 0.80281 0.95739 1.45822 1.71648 1.07062 1.11314 1.20670 0.75850 0.87157 0.86564 1.90707 1.52626 1.85651 1.16644 1.21239 1.06178 0.84981 0.90100 1.45603 1.71914 1.06549 1.11867 1.16626 0.76421 0.81159 0.86371 1.90872 1.53590 1.78577 1.20228 1.21801 1.16926 0.95692 0.82218 1.22285 0.98730 0.92240 1.00782 1.22245 1.09238 1.02537 0.91231 1.25403 0.98732 0.82010 0.99871 1.84094 1.69372 1.36857 1.16784 1.21940 0.96858 0.99467 0.97120 1.21091 0.97252 0.86004 0.94364 0.94179 0.98357 0.93199 0.91237 0.93141 0.90288 0.91567 0.92223 0.74403 0.86191 0.86124 0.74476 0.81900 0.79813 0.73179 0.93110 0.89433 0.96371 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.07 11.19 21.65 0.24 -54.83 16 2 C -0.05 -2.84 4.92 84.86 0.42 -2.42 16 3 Si 0.96 44.85 29.59 68.60 2.03 46.88 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.26 -14.25 9.58 84.03 0.81 -13.44 16 8 H 0.06 3.42 7.89 -2.91 -0.02 3.40 16 9 N -0.61 -29.89 2.99 -699.11 -2.09 -31.98 16 10 C 0.18 8.24 5.30 86.36 0.46 8.70 16 11 C -0.12 -4.25 5.36 30.67 0.16 -4.09 16 12 C -0.08 -2.14 2.19 -10.77 -0.02 -2.17 16 13 C 0.14 3.18 5.06 86.38 0.44 3.62 16 14 N -0.71 -12.73 5.27 -463.06 -2.44 -15.17 16 15 C 0.51 10.30 7.90 87.65 0.69 10.99 16 16 O -0.58 -15.97 15.67 -3.05 -0.05 -16.02 16 17 C 0.10 1.60 6.15 85.63 0.53 2.13 16 18 N -0.71 -13.49 5.52 -470.84 -2.60 -16.09 16 19 C 0.61 13.11 7.79 86.44 0.67 13.78 16 20 O -0.55 -14.48 16.86 -4.34 -0.07 -14.55 16 21 C -0.11 -2.17 7.13 24.07 0.17 -2.00 16 22 C -0.12 -1.87 10.62 22.39 0.24 -1.63 16 23 C -0.23 -2.27 10.87 22.07 0.24 -2.03 16 24 C 0.01 0.08 12.08 67.10 0.81 0.89 16 25 O -0.18 -2.80 10.40 -5.03 -0.05 -2.86 16 26 C -0.11 -3.28 5.25 30.67 0.16 -3.12 16 27 C 0.14 5.31 6.52 86.36 0.56 5.87 16 28 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 29 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 30 H 0.05 2.69 6.07 -2.39 -0.01 2.68 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.42 5.35 7.65 -92.71 -0.71 4.64 16 37 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.42 8.24 7.19 -92.71 -0.67 7.57 16 40 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 41 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 42 H 0.25 -0.24 8.06 -2.91 -0.02 -0.26 16 43 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.09 1.83 7.15 -2.39 -0.02 1.82 16 45 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 Total: -1.00 -74.85 383.32 0.93 -73.91 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -0.36 Total: 15.63 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 6.33 Total: 15.08 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -6.89 Total: -118.08 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -0.17 Total: -33.43 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -74.85 0.93 -73.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359851545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.115 kcal (2) G-P(sol) polarization free energy of solvation -74.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds