Wall clock time and date at job start Tue Mar 31 2020 18:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99995 * 2 1 4 4 H 1.48495 * 109.47164 * 269.99825 * 3 2 1 5 5 H 1.48505 * 109.47192 * 30.00171 * 3 2 1 6 6 H 1.48500 * 109.46785 * 149.99919 * 3 2 1 7 7 C 1.37870 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00391 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47292 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99612 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00116 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00037 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47316 * 180.02562 * 14 13 11 16 16 H 1.08999 * 110.33077 * 57.74767 * 15 14 13 17 17 C 1.54477 * 110.37308 * 180.02562 * 15 14 13 18 18 C 1.54507 * 104.06510 * 142.80822 * 17 15 14 19 19 C 1.54483 * 104.06211 * 359.97438 * 18 17 15 20 20 H 1.09002 * 110.37322 * 94.85326 * 19 18 17 21 21 C 1.50699 * 110.37332 * 217.08025 * 19 18 17 22 22 N 1.31133 * 126.55131 * 253.45102 * 21 19 18 23 23 C 1.34490 * 105.61459 * 180.02562 * 22 21 19 24 24 C 1.50702 * 126.28740 * 179.97438 * 23 22 21 25 25 C 1.53004 * 117.50027 * 188.74179 * 24 23 22 26 26 C 1.53005 * 117.49859 * 120.07972 * 24 23 22 27 27 N 1.29946 * 107.42874 * 359.97438 * 23 22 21 28 28 O 1.21308 * 110.24531 * 359.71508 * 27 23 22 29 29 O 1.44428 * 104.89902 * 335.96812 * 19 18 17 30 30 H 0.96997 * 119.99939 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46904 * 60.00425 * 9 7 2 32 32 H 1.08997 * 109.46966 * 300.00013 * 9 7 2 33 33 H 1.09000 * 109.47082 * 60.00064 * 10 9 7 34 34 H 1.08997 * 109.47216 * 299.99970 * 10 9 7 35 35 H 0.96998 * 119.99809 * 0.02562 * 13 11 10 36 36 H 1.09000 * 109.47057 * 60.00168 * 14 13 11 37 37 H 1.09008 * 109.47505 * 300.00671 * 14 13 11 38 38 H 1.09000 * 110.51486 * 24.16264 * 17 15 14 39 39 H 1.09006 * 110.51115 * 261.45247 * 17 15 14 40 40 H 1.09005 * 110.51421 * 241.35469 * 18 17 15 41 41 H 1.09001 * 110.51335 * 118.64380 * 18 17 15 42 42 H 1.08998 * 115.54987 * 334.41472 * 24 23 22 43 43 H 1.09001 * 117.49374 * 359.97438 * 25 24 23 44 44 H 1.08992 * 117.50169 * 145.02313 * 25 24 23 45 45 H 1.08998 * 117.50069 * 214.98168 * 26 24 23 46 46 H 1.09005 * 117.49716 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 -0.0001 12 8 0.2788 -4.9671 -0.0010 13 7 2.1656 -6.1344 -0.0007 14 6 1.4331 -7.4031 -0.0019 15 6 2.4272 -8.5661 -0.0018 16 1 3.0873 -8.4999 0.8631 17 6 1.6759 -9.9158 -0.0037 18 6 2.5375 -10.8238 -0.9095 19 6 3.7071 -9.9150 -1.3483 20 1 4.5649 -10.0566 -0.6908 21 6 4.0891 -10.2046 -2.7770 22 7 5.1607 -10.8407 -3.1853 23 6 5.0808 -10.8598 -4.5277 24 6 6.0789 -11.4790 -5.4719 25 6 5.8983 -11.2097 -6.9671 26 6 5.5814 -12.5936 -6.3945 27 7 3.9848 -10.2464 -4.8612 28 8 3.3975 -9.8675 -3.8697 29 8 3.1974 -8.5692 -1.2270 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8898 32 1 0.6240 -2.5566 0.8903 33 1 2.8718 -3.6044 0.8905 34 1 2.8718 -3.6044 -0.8894 35 1 3.1355 -6.1344 -0.0004 36 1 0.8067 -7.4602 -0.8922 37 1 0.8060 -7.4615 0.8878 38 1 0.6768 -9.7962 -0.4225 39 1 1.6217 -10.3242 1.0055 40 1 1.9643 -11.1531 -1.7762 41 1 2.9092 -11.6811 -0.3481 42 1 7.0984 -11.5561 -5.0939 43 1 5.0572 -10.5850 -7.2679 44 1 6.7988 -11.1099 -7.5730 45 1 6.2737 -13.4036 -6.6239 46 1 4.5320 -12.8786 -6.3189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360627867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:00 Heat of formation + Delta-G solvation = 4.877197 kcal Electronic energy + Delta-G solvation = -27679.203609 eV Core-core repulsion = 23572.961366 eV Total energy + Delta-G solvation = -4106.242243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.97916 -40.31247 -38.90656 -38.15567 -35.83164 -34.71481 -33.40471 -33.04981 -32.61213 -31.09499 -30.04537 -26.86827 -25.74334 -25.27158 -23.84871 -22.93511 -22.83530 -21.72136 -21.37620 -20.69781 -19.53016 -18.49167 -18.10084 -17.23292 -16.97954 -16.45302 -16.15066 -16.07664 -15.55034 -15.49918 -14.93541 -14.84739 -14.39361 -14.35215 -13.47079 -13.27448 -13.16438 -12.84236 -12.68312 -12.58497 -12.46546 -12.33669 -12.18548 -12.08605 -11.84522 -11.78948 -11.53188 -11.31926 -11.13848 -11.11408 -11.06080 -10.89935 -10.56798 -10.45213 -10.07741 -9.91286 -9.62892 -9.14644 -8.97849 -8.76845 -8.28551 -5.92834 -3.96974 0.67776 1.67462 2.28107 2.76906 3.24974 3.27606 3.32707 3.35896 3.41535 3.44126 3.52873 3.75455 3.92061 4.07972 4.25662 4.27035 4.38701 4.40363 4.50633 4.60930 4.65181 4.80084 4.89269 4.97122 5.07364 5.15165 5.23608 5.32004 5.35800 5.42032 5.43197 5.47058 5.52033 5.55936 5.57621 5.61003 5.88772 6.16899 6.28091 6.30465 6.72563 6.94392 7.77201 7.78082 7.90661 7.92169 8.11023 8.42576 8.81910 9.11716 9.66327 11.18140 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.001955 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.088227 B =14318.048830 C =15826.552724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.511 3.489 12 O -0.536 6.536 13 N -0.742 5.742 14 C 0.127 3.873 15 C 0.064 3.936 16 H 0.088 0.912 17 C -0.145 4.145 18 C -0.145 4.145 19 C 0.169 3.831 20 H 0.121 0.879 21 C 0.191 3.809 22 N -0.469 5.469 23 C 0.200 3.800 24 C -0.081 4.081 25 C -0.158 4.158 26 C -0.156 4.156 27 N -0.379 5.379 28 O 0.097 5.903 29 O -0.350 6.350 30 H 0.260 0.740 31 H 0.023 0.977 32 H 0.024 0.976 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.400 0.600 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.137 0.863 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.801 -31.206 -5.084 33.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.299 3.701 12 O -0.412 6.412 13 N -0.396 5.396 14 C 0.002 3.998 15 C 0.006 3.994 16 H 0.106 0.894 17 C -0.183 4.183 18 C -0.183 4.183 19 C 0.109 3.891 20 H 0.139 0.861 21 C -0.030 4.030 22 N -0.204 5.204 23 C -0.072 4.072 24 C -0.100 4.100 25 C -0.196 4.196 26 C -0.195 4.195 27 N -0.084 5.084 28 O 0.037 5.963 29 O -0.269 6.269 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.234 0.766 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.155 0.845 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.891 -30.979 -6.008 33.383 hybrid contribution 0.905 0.815 0.236 1.240 sum 11.796 -30.164 -5.772 32.898 Atomic orbital electron populations 1.70003 1.06034 1.26526 1.50300 1.25028 0.94836 0.99217 0.95362 0.86588 0.79752 0.83528 0.78052 1.20695 1.21242 1.19914 1.21235 0.92944 0.91044 1.51237 0.92608 1.18902 0.93198 0.89385 0.98618 1.21860 1.00713 0.91910 1.02508 1.21555 0.88616 0.85629 0.74289 1.90668 1.14474 1.87659 1.48374 1.46109 1.10230 1.05227 1.78052 1.21332 0.93442 0.81723 1.03274 1.23479 0.92886 0.95623 0.87374 0.89450 1.22946 1.00504 0.93643 1.01214 1.23014 0.95494 0.98724 1.01109 1.21281 0.98916 0.85146 0.83745 0.86139 1.28266 0.87276 0.93880 0.93543 1.71769 1.19773 1.19856 1.08993 1.24788 0.94436 0.98749 0.89205 1.20088 0.96699 1.04016 0.89238 1.23119 1.04520 0.99164 0.92749 1.23104 1.02818 0.92343 1.01192 1.74635 1.09645 1.15914 1.08245 1.85375 1.42453 1.57432 1.11021 1.89385 1.68892 1.25631 1.42964 0.92990 0.95825 0.95801 0.90252 0.90226 0.76587 0.90745 0.89963 0.89191 0.89079 0.89769 0.88721 0.84531 0.87683 0.87240 0.87232 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.74 13.29 55.43 0.74 -27.01 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 11 C 0.51 9.92 7.83 -10.98 -0.09 9.84 16 12 O -0.54 -12.72 15.98 5.55 0.09 -12.63 16 13 N -0.74 -10.38 5.52 -60.30 -0.33 -10.71 16 14 C 0.13 1.44 5.29 -4.05 -0.02 1.42 16 15 C 0.06 0.49 3.33 -25.96 -0.09 0.40 16 16 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 17 C -0.14 -0.76 6.63 -25.17 -0.17 -0.93 16 18 C -0.14 -0.75 6.62 -25.16 -0.17 -0.92 16 19 C 0.17 1.26 3.84 -27.11 -0.10 1.16 16 20 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 21 C 0.19 1.96 7.35 -13.05 -0.10 1.87 16 22 N -0.47 -5.15 11.55 -9.87 -0.11 -5.26 16 23 C 0.20 2.19 7.74 -156.38 -1.21 0.98 16 24 C -0.08 -0.63 6.33 -91.77 -0.58 -1.21 16 25 C -0.16 -1.01 10.15 -26.69 -0.27 -1.29 16 26 C -0.16 -0.92 10.24 -26.69 -0.27 -1.19 16 27 N -0.38 -4.67 11.77 30.90 0.36 -4.31 16 28 O 0.10 1.18 11.31 18.10 0.20 1.39 16 29 O -0.35 -3.41 11.00 -35.24 -0.39 -3.80 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.02 0.71 8.10 -51.93 -0.42 0.28 16 32 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 35 H 0.40 4.62 8.47 -40.82 -0.35 4.27 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.09 0.51 7.87 -51.93 -0.41 0.10 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.49 7.87 -51.93 -0.41 0.08 16 41 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.10 0.82 7.91 -51.93 -0.41 0.41 16 44 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 393.17 15.07 5.93 5.93 Total: -1.00 -37.17 393.17 -9.32 -46.49 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.03 Total: -1.29 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -3.75 Total: -5.72 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.65 Total: -47.29 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.09 Total: -15.04 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.17 -9.32 -46.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360627867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.368 kcal (2) G-P(sol) polarization free energy of solvation -37.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds