Wall clock time and date at job start Tue Mar 31 2020 18:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99995 * 2 1 4 4 H 1.48495 * 109.47164 * 269.99825 * 3 2 1 5 5 H 1.48505 * 109.47192 * 30.00171 * 3 2 1 6 6 H 1.48500 * 109.46785 * 149.99919 * 3 2 1 7 7 C 1.37870 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00391 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47292 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99612 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00116 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00037 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47316 * 180.02562 * 14 13 11 16 16 H 1.08999 * 110.33077 * 57.74767 * 15 14 13 17 17 C 1.54477 * 110.37308 * 180.02562 * 15 14 13 18 18 C 1.54507 * 104.06510 * 142.80822 * 17 15 14 19 19 C 1.54483 * 104.06211 * 359.97438 * 18 17 15 20 20 H 1.09002 * 110.37322 * 94.85326 * 19 18 17 21 21 C 1.50699 * 110.37332 * 217.08025 * 19 18 17 22 22 N 1.31133 * 126.55131 * 253.45102 * 21 19 18 23 23 C 1.34490 * 105.61459 * 180.02562 * 22 21 19 24 24 C 1.50702 * 126.28740 * 179.97438 * 23 22 21 25 25 C 1.53004 * 117.50027 * 188.74179 * 24 23 22 26 26 C 1.53005 * 117.49859 * 120.07972 * 24 23 22 27 27 N 1.29946 * 107.42874 * 359.97438 * 23 22 21 28 28 O 1.21308 * 110.24531 * 359.71508 * 27 23 22 29 29 O 1.44428 * 104.89902 * 335.96812 * 19 18 17 30 30 H 0.96997 * 119.99939 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46904 * 60.00425 * 9 7 2 32 32 H 1.08997 * 109.46966 * 300.00013 * 9 7 2 33 33 H 1.09000 * 109.47082 * 60.00064 * 10 9 7 34 34 H 1.08997 * 109.47216 * 299.99970 * 10 9 7 35 35 H 0.96998 * 119.99809 * 0.02562 * 13 11 10 36 36 H 1.09000 * 109.47057 * 60.00168 * 14 13 11 37 37 H 1.09008 * 109.47505 * 300.00671 * 14 13 11 38 38 H 1.09000 * 110.51486 * 24.16264 * 17 15 14 39 39 H 1.09006 * 110.51115 * 261.45247 * 17 15 14 40 40 H 1.09005 * 110.51421 * 241.35469 * 18 17 15 41 41 H 1.09001 * 110.51335 * 118.64380 * 18 17 15 42 42 H 1.08998 * 115.54987 * 334.41472 * 24 23 22 43 43 H 1.09001 * 117.49374 * 359.97438 * 25 24 23 44 44 H 1.08992 * 117.50169 * 145.02313 * 25 24 23 45 45 H 1.08998 * 117.50069 * 214.98168 * 26 24 23 46 46 H 1.09005 * 117.49716 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 -0.0001 12 8 0.2788 -4.9671 -0.0010 13 7 2.1656 -6.1344 -0.0007 14 6 1.4331 -7.4031 -0.0019 15 6 2.4272 -8.5661 -0.0018 16 1 3.0873 -8.4999 0.8631 17 6 1.6759 -9.9158 -0.0037 18 6 2.5375 -10.8238 -0.9095 19 6 3.7071 -9.9150 -1.3483 20 1 4.5649 -10.0566 -0.6908 21 6 4.0891 -10.2046 -2.7770 22 7 5.1607 -10.8407 -3.1853 23 6 5.0808 -10.8598 -4.5277 24 6 6.0789 -11.4790 -5.4719 25 6 5.8983 -11.2097 -6.9671 26 6 5.5814 -12.5936 -6.3945 27 7 3.9848 -10.2464 -4.8612 28 8 3.3975 -9.8675 -3.8697 29 8 3.1974 -8.5692 -1.2270 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8898 32 1 0.6240 -2.5566 0.8903 33 1 2.8718 -3.6044 0.8905 34 1 2.8718 -3.6044 -0.8894 35 1 3.1355 -6.1344 -0.0004 36 1 0.8067 -7.4602 -0.8922 37 1 0.8060 -7.4615 0.8878 38 1 0.6768 -9.7962 -0.4225 39 1 1.6217 -10.3242 1.0055 40 1 1.9643 -11.1531 -1.7762 41 1 2.9092 -11.6811 -0.3481 42 1 7.0984 -11.5561 -5.0939 43 1 5.0572 -10.5850 -7.2679 44 1 6.7988 -11.1099 -7.5730 45 1 6.2737 -13.4036 -6.6239 46 1 4.5320 -12.8786 -6.3189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360627867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:59 Heat of formation + Delta-G solvation = -23.116969 kcal Electronic energy + Delta-G solvation = -27680.417527 eV Core-core repulsion = 23572.961366 eV Total energy + Delta-G solvation = -4107.456161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.79150 -41.08113 -40.30308 -38.73382 -36.60714 -35.94616 -35.50429 -33.81688 -33.32583 -32.93465 -31.03561 -28.20437 -26.87089 -26.38187 -24.70715 -23.77930 -23.40506 -22.98978 -22.35737 -21.36645 -21.01554 -19.29986 -18.91833 -18.76244 -17.90353 -17.60610 -17.09096 -16.80711 -16.75622 -16.63328 -16.36317 -16.29794 -15.50988 -14.83881 -14.80675 -14.60085 -14.20898 -14.00956 -13.69973 -13.63589 -13.41542 -13.23117 -13.20666 -13.01276 -12.81646 -12.76422 -12.55921 -12.54622 -12.38884 -12.31516 -11.91183 -11.85438 -11.66647 -11.62400 -11.57934 -11.30130 -11.06761 -10.78720 -10.71120 -10.56754 -10.05848 -8.17682 -6.31700 -0.11096 0.91575 1.41890 1.44872 1.55770 1.59188 1.73498 2.07061 2.26372 2.45097 2.67085 2.75181 3.08742 3.15053 3.36446 3.50021 3.72751 3.77832 3.84871 3.89624 4.05348 4.09117 4.10876 4.17636 4.33367 4.42761 4.49715 4.52893 4.56821 4.63814 4.65010 4.74299 4.84793 4.88874 4.90125 4.97518 4.98128 5.08549 5.10078 5.14083 5.45706 5.52182 5.61825 5.64304 5.86104 6.18385 6.62030 6.86701 6.96699 7.36076 7.38783 8.94981 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.001955 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.088227 B =14318.048830 C =15826.552724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.041 3.959 10 C -0.121 4.121 11 C 0.511 3.489 12 O -0.590 6.590 13 N -0.717 5.717 14 C 0.121 3.879 15 C 0.070 3.930 16 H 0.117 0.883 17 C -0.139 4.139 18 C -0.137 4.137 19 C 0.167 3.833 20 H 0.147 0.853 21 C 0.194 3.806 22 N -0.482 5.482 23 C 0.198 3.802 24 C -0.100 4.100 25 C -0.156 4.156 26 C -0.142 4.142 27 N -0.406 5.406 28 O 0.072 5.928 29 O -0.379 6.379 30 H 0.263 0.737 31 H -0.020 1.020 32 H -0.015 1.015 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.416 0.584 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.124 0.876 42 H 0.153 0.847 43 H 0.085 0.915 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.964 -32.721 -4.248 36.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.582 4.582 8 H 0.093 0.907 9 C 0.004 3.996 10 C -0.160 4.160 11 C 0.299 3.701 12 O -0.470 6.470 13 N -0.370 5.370 14 C -0.003 4.003 15 C 0.013 3.987 16 H 0.135 0.865 17 C -0.177 4.177 18 C -0.176 4.176 19 C 0.108 3.892 20 H 0.164 0.836 21 C -0.027 4.027 22 N -0.217 5.217 23 C -0.074 4.074 24 C -0.119 4.119 25 C -0.194 4.194 26 C -0.180 4.180 27 N -0.116 5.116 28 O 0.016 5.984 29 O -0.299 6.299 30 H 0.071 0.929 31 H -0.002 1.002 32 H 0.004 0.996 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.253 0.747 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.139 0.861 40 H 0.091 0.909 41 H 0.142 0.858 42 H 0.170 0.830 43 H 0.103 0.897 44 H 0.151 0.849 45 H 0.155 0.845 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.100 -32.540 -5.152 35.835 hybrid contribution -0.092 1.210 -0.045 1.214 sum 14.008 -31.330 -5.197 34.710 Atomic orbital electron populations 1.70182 1.08276 1.27785 1.51475 1.26151 0.95764 1.03967 0.94661 0.85308 0.78693 0.77701 0.78454 1.19874 1.21039 1.17867 1.21725 0.93988 0.91676 1.50766 0.90676 1.18695 0.93734 0.92472 0.94726 1.21632 0.99338 0.90356 1.04699 1.21277 0.87778 0.86811 0.74218 1.90652 1.16606 1.88431 1.51308 1.45839 1.11040 1.04713 1.75433 1.21537 0.94448 0.81661 1.02611 1.23539 0.92643 0.94842 0.87642 0.86503 1.22964 0.99639 0.92203 1.02870 1.23038 0.94437 0.99130 1.00979 1.21689 1.00605 0.84634 0.82295 0.83562 1.28973 0.86712 0.92762 0.94227 1.71785 1.20155 1.20659 1.09072 1.25435 0.94388 0.97797 0.89818 1.20386 0.96769 1.05419 0.89376 1.23175 1.04829 0.99314 0.92073 1.23194 1.02802 0.92616 0.99371 1.74631 1.10714 1.17469 1.08806 1.85332 1.43179 1.58240 1.11628 1.89350 1.69386 1.27091 1.44041 0.92862 1.00181 0.99613 0.87502 0.88359 0.74700 0.92892 0.89322 0.90071 0.86071 0.90858 0.85799 0.82986 0.89655 0.84885 0.84462 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.31 13.29 21.45 0.28 -60.03 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.25 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.54 -31.59 9.11 25.60 0.23 -31.35 16 8 H 0.08 3.98 7.74 -2.91 -0.02 3.95 16 9 C 0.04 2.36 4.26 29.85 0.13 2.49 16 10 C -0.12 -4.98 5.64 29.85 0.17 -4.81 16 11 C 0.51 20.11 7.83 87.66 0.69 20.80 16 12 O -0.59 -29.31 15.98 -3.04 -0.05 -29.36 16 13 N -0.72 -19.32 5.52 -463.06 -2.56 -21.88 16 14 C 0.12 2.65 5.29 86.38 0.46 3.11 16 15 C 0.07 0.90 3.33 31.10 0.10 1.00 16 16 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 17 C -0.14 -1.08 6.63 31.61 0.21 -0.87 16 18 C -0.14 -1.08 6.62 31.61 0.21 -0.87 16 19 C 0.17 2.15 3.84 30.35 0.12 2.27 16 20 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 21 C 0.19 3.89 7.35 88.38 0.65 4.54 16 22 N -0.48 -10.26 11.55 -303.20 -3.50 -13.76 16 23 C 0.20 4.32 7.74 138.46 1.07 5.39 16 24 C -0.10 -1.45 6.33 -11.54 -0.07 -1.52 16 25 C -0.16 -1.86 10.15 30.62 0.31 -1.55 16 26 C -0.14 -1.46 10.24 30.62 0.31 -1.15 16 27 N -0.41 -10.38 11.77 -60.32 -0.71 -11.09 16 28 O 0.07 1.81 11.31 74.87 0.85 2.65 16 29 O -0.38 -6.79 11.00 -148.97 -1.64 -8.43 16 30 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 31 H -0.02 -1.31 8.10 -2.39 -0.02 -1.33 16 32 H -0.01 -0.93 8.10 -2.39 -0.02 -0.95 16 33 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 34 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 35 H 0.42 8.66 8.47 -92.71 -0.79 7.87 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.08 0.81 7.87 -2.39 -0.02 0.79 16 39 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 40 H 0.07 0.76 7.87 -2.38 -0.02 0.75 16 41 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.08 1.37 7.91 -2.39 -0.02 1.35 16 44 H 0.13 0.91 8.14 -2.39 -0.02 0.90 16 45 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -86.42 393.17 -0.04 -86.46 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.21 Total: 10.95 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 5.05 Total: -2.56 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -6.48 Total: -106.76 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.84 Total: -35.14 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -86.42 -0.04 -86.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360627867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.338 kcal (2) G-P(sol) polarization free energy of solvation -86.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds