Wall clock time and date at job start Tue Mar 31 2020 18:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35983 * 116.99537 * 179.97438 * 11 10 9 13 13 C 1.38781 * 120.49767 * 0.02562 * 12 11 10 14 14 C 1.38794 * 118.44752 * 179.97438 * 13 12 11 15 15 C 1.38075 * 119.35183 * 359.97438 * 14 13 12 16 16 N 1.31963 * 120.95403 * 359.97438 * 15 14 13 17 17 C 1.32266 * 121.69068 * 359.72759 * 16 15 14 18 18 N 1.39594 * 119.72727 * 180.26509 * 17 16 15 19 19 C 1.34774 * 119.99891 * 0.26464 * 18 17 16 20 20 O 1.21589 * 119.99929 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00006 * 179.97438 * 19 18 17 22 22 C 1.46496 * 119.99986 * 180.02562 * 21 19 18 23 23 C 1.53004 * 109.46728 * 179.97438 * 22 21 19 24 24 O 1.42898 * 112.85010 * 53.80550 * 23 22 21 25 25 C 1.53773 * 113.61579 * 282.49282 * 23 22 21 26 26 C 1.53781 * 87.08345 * 220.02257 * 25 23 22 27 27 C 1.53776 * 87.08198 * 25.43180 * 26 25 23 28 28 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 30 30 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 31 31 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 32 32 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 33 33 H 1.07993 * 120.77611 * 359.94975 * 13 12 11 34 34 H 1.07997 * 120.32400 * 180.02562 * 14 13 12 35 35 H 1.08000 * 119.51826 * 179.97438 * 15 14 13 36 36 H 0.97000 * 119.99898 * 180.26996 * 18 17 16 37 37 H 0.97000 * 119.99782 * 0.02562 * 21 19 18 38 38 H 1.08998 * 109.47109 * 299.99543 * 22 21 19 39 39 H 1.09003 * 109.47550 * 60.00165 * 22 21 19 40 40 H 0.96701 * 113.99948 * 309.66513 * 24 23 22 41 41 H 1.09005 * 113.61671 * 334.57196 * 25 23 22 42 42 H 1.09004 * 113.61564 * 105.47424 * 25 23 22 43 43 H 1.09005 * 113.61562 * 270.88204 * 26 25 23 44 44 H 1.08998 * 113.61577 * 139.98472 * 26 25 23 45 45 H 1.08996 * 113.61852 * 220.01727 * 27 26 25 46 46 H 1.09008 * 113.61203 * 89.11619 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 8 5.4506 -2.6365 -0.0011 12 6 6.0679 -3.8482 -0.0006 13 6 5.3221 -5.0186 0.0004 14 6 5.9960 -6.2319 0.0004 15 6 7.3767 -6.2393 -0.0013 16 7 8.0615 -5.1112 -0.0032 17 6 7.4599 -3.9333 -0.0091 18 7 8.2248 -2.7655 -0.0166 19 6 9.5704 -2.8413 -0.0232 20 8 10.1181 -3.9269 -0.0232 21 7 10.3088 -1.7139 -0.0310 22 6 11.7714 -1.7963 -0.0388 23 6 12.3616 -0.3847 -0.0473 24 8 11.8641 0.4312 1.0151 25 6 12.3105 0.2960 -1.4252 26 6 13.7138 0.8452 -1.1186 27 6 13.8937 -0.3584 -0.1786 28 1 -0.4850 0.8401 0.0004 29 1 3.8753 -0.6796 0.8894 30 1 3.8746 -0.6807 -0.8905 31 1 3.6585 -3.1502 0.8903 32 1 3.6578 -3.1505 -0.8897 33 1 4.2426 -4.9860 0.0017 34 1 5.4457 -7.1612 0.0007 35 1 7.9038 -7.1819 -0.0009 36 1 7.7877 -1.8995 -0.0170 37 1 9.8718 -0.8479 -0.0314 38 1 12.1102 -2.3268 0.8511 39 1 12.1005 -2.3327 -0.9288 40 1 10.8999 0.4371 1.0881 41 1 12.2888 -0.4061 -2.2587 42 1 11.5462 1.0694 -1.5020 43 1 13.7039 1.8050 -0.6021 44 1 14.3848 0.8326 -1.9775 45 1 14.4075 -0.1136 0.7510 46 1 14.3049 -1.2396 -0.6712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361814896.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:21 Heat of formation + Delta-G solvation = -44.443488 kcal Electronic energy + Delta-G solvation = -28275.067735 eV Core-core repulsion = 24166.686787 eV Total energy + Delta-G solvation = -4108.380948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.06726 -40.35458 -39.29986 -37.89289 -35.25433 -34.95188 -34.41347 -33.46846 -31.69684 -30.96551 -29.52241 -28.03393 -26.18922 -25.66260 -23.94322 -22.96073 -22.65958 -21.15642 -20.57533 -20.15190 -19.02980 -18.36907 -17.74109 -16.80097 -16.61713 -16.14972 -16.02100 -15.85670 -15.60275 -15.34263 -15.20412 -14.66867 -14.28159 -14.24715 -14.13780 -14.00663 -13.49153 -13.37050 -13.10718 -12.77616 -12.59185 -12.28389 -12.17090 -12.08178 -11.65617 -11.31537 -11.27501 -11.01249 -10.80568 -10.76370 -10.52100 -10.33698 -10.18311 -10.15770 -9.96168 -9.47181 -9.40525 -9.21438 -9.15365 -8.72033 -7.72568 -6.22575 -4.24431 1.20633 1.39842 2.27245 3.09976 3.19835 3.27946 3.30256 3.41057 3.52165 3.72101 3.98854 4.04395 4.20212 4.28562 4.29405 4.40182 4.60386 4.90911 4.94692 5.00986 5.11128 5.15579 5.18324 5.25462 5.31653 5.40072 5.42602 5.49930 5.58126 5.74019 5.74614 5.76745 5.90181 5.98493 6.11623 6.12680 6.26220 6.34697 6.45150 6.66513 6.92483 7.08898 7.12854 7.47047 7.55103 7.65213 8.16072 8.28431 8.50152 8.77701 9.36930 10.89854 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008901 B = 0.002901 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.985267 B = 9648.934304 C =12559.393259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.007 4.007 10 C 0.074 3.926 11 O -0.321 6.321 12 C 0.064 3.936 13 C -0.144 4.144 14 C -0.161 4.161 15 C 0.078 3.922 16 N -0.442 5.442 17 C 0.346 3.654 18 N -0.661 5.661 19 C 0.698 3.302 20 O -0.531 6.531 21 N -0.747 5.747 22 C 0.124 3.876 23 C 0.094 3.906 24 O -0.536 6.536 25 C -0.166 4.166 26 C -0.135 4.135 27 C -0.122 4.122 28 H 0.267 0.733 29 H 0.028 0.972 30 H 0.023 0.977 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.147 0.853 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.419 0.581 37 H 0.392 0.608 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.378 0.622 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.743 -3.517 -1.510 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.045 4.045 10 C 0.000 4.000 11 O -0.234 6.234 12 C 0.012 3.988 13 C -0.171 4.171 14 C -0.183 4.183 15 C -0.078 4.078 16 N -0.157 5.157 17 C 0.112 3.888 18 N -0.311 5.311 19 C 0.397 3.603 20 O -0.402 6.402 21 N -0.406 5.406 22 C 0.000 4.000 23 C 0.052 3.948 24 O -0.342 6.342 25 C -0.203 4.203 26 C -0.172 4.172 27 C -0.160 4.160 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.256 0.744 37 H 0.226 0.774 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.226 0.774 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 25.785 -4.081 -1.410 26.144 hybrid contribution -2.017 1.497 -0.111 2.514 sum 23.769 -2.584 -1.521 23.957 Atomic orbital electron populations 1.69886 1.06294 1.27316 1.49828 1.24939 0.94767 0.99224 0.94060 0.86749 0.80392 0.83319 0.78716 1.20066 1.21134 1.18827 1.20810 0.88228 0.94983 1.52703 0.90714 1.19579 0.97047 0.89985 0.97845 1.23139 0.73974 1.02231 1.00702 1.86040 1.24557 1.24809 1.87981 1.19484 0.90824 0.87017 1.01443 1.21620 1.01248 0.91345 1.02865 1.21911 0.95524 0.98262 1.02574 1.22434 0.91104 0.95570 0.98722 1.67620 1.38338 0.96226 1.13483 1.17461 0.84084 0.86624 1.00582 1.42459 1.04899 1.08029 1.75700 1.15892 0.81010 0.84676 0.78685 1.91042 1.70167 1.25685 1.53354 1.45020 1.06744 1.07438 1.81360 1.21805 0.78203 0.96543 1.03472 1.22570 0.96100 0.88464 0.87649 1.86534 1.26542 1.69148 1.51982 1.23651 0.98597 1.00876 0.97215 1.22755 0.96750 0.98271 0.99428 1.22988 0.92572 0.99516 1.00883 0.92352 0.95400 0.95857 0.92296 0.92339 0.83573 0.84670 0.82562 0.74399 0.77374 0.90607 0.90270 0.77374 0.89019 0.90693 0.89689 0.91100 0.90139 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.31 13.96 55.43 0.77 -25.54 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 20.47 27.47 -169.99 -4.67 15.81 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 7 C -0.53 -14.13 9.66 -34.44 -0.33 -14.46 16 8 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 9 C -0.01 -0.16 4.41 -27.88 -0.12 -0.28 16 10 C 0.07 1.36 4.70 37.16 0.17 1.53 16 11 O -0.32 -5.44 9.39 -19.69 -0.18 -5.62 16 12 C 0.06 1.01 6.72 -38.92 -0.26 0.74 16 13 C -0.14 -2.01 9.14 -39.17 -0.36 -2.37 16 14 C -0.16 -1.94 10.10 -39.44 -0.40 -2.34 16 15 C 0.08 1.04 11.17 -17.56 -0.20 0.84 16 16 N -0.44 -7.22 7.87 -12.22 -0.10 -7.32 16 17 C 0.35 5.49 7.45 -154.43 -1.15 4.34 16 18 N -0.66 -9.01 5.40 -15.67 -0.08 -9.10 16 19 C 0.70 9.58 8.53 -86.92 -0.74 8.84 16 20 O -0.53 -9.32 14.59 5.29 0.08 -9.24 16 21 N -0.75 -6.97 5.34 -65.23 -0.35 -7.31 16 22 C 0.12 1.08 5.26 -4.04 -0.02 1.06 16 23 C 0.09 0.68 1.41 -89.81 -0.13 0.55 16 24 O -0.54 -4.39 13.41 -35.23 -0.47 -4.86 16 25 C -0.17 -1.07 7.47 -25.92 -0.19 -1.26 16 26 C -0.13 -0.84 8.02 -25.92 -0.21 -1.05 16 27 C -0.12 -0.79 7.47 -25.92 -0.19 -0.98 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 30 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 31 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 32 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 33 H 0.15 1.90 6.44 -52.49 -0.34 1.56 16 34 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.42 4.82 8.06 -40.82 -0.33 4.49 16 37 H 0.39 2.58 7.34 -40.82 -0.30 2.28 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.71 8.05 -51.93 -0.42 0.29 16 40 H 0.38 2.09 7.62 45.56 0.35 2.44 16 41 H 0.09 0.57 8.03 -51.93 -0.42 0.15 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.10 0.51 8.10 -51.92 -0.42 0.09 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -34.21 382.09 -9.46 -43.67 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.99 Total: 6.68 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -4.23 Total: -2.92 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.24 Total: -49.27 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.58 Total: -19.72 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.81 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.21 -9.46 -43.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361814896.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.775 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds