Wall clock time and date at job start Tue Mar 31 2020 18:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35983 * 116.99537 * 179.97438 * 11 10 9 13 13 C 1.38781 * 120.49767 * 0.02562 * 12 11 10 14 14 C 1.38794 * 118.44752 * 179.97438 * 13 12 11 15 15 C 1.38075 * 119.35183 * 359.97438 * 14 13 12 16 16 N 1.31963 * 120.95403 * 359.97438 * 15 14 13 17 17 C 1.32266 * 121.69068 * 359.72759 * 16 15 14 18 18 N 1.39594 * 119.72727 * 180.26509 * 17 16 15 19 19 C 1.34774 * 119.99891 * 0.26464 * 18 17 16 20 20 O 1.21589 * 119.99929 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00006 * 179.97438 * 19 18 17 22 22 C 1.46496 * 119.99986 * 180.02562 * 21 19 18 23 23 C 1.53004 * 109.46728 * 179.97438 * 22 21 19 24 24 O 1.42898 * 112.85010 * 53.80550 * 23 22 21 25 25 C 1.53773 * 113.61579 * 282.49282 * 23 22 21 26 26 C 1.53781 * 87.08345 * 220.02257 * 25 23 22 27 27 C 1.53776 * 87.08198 * 25.43180 * 26 25 23 28 28 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 30 30 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 31 31 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 32 32 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 33 33 H 1.07993 * 120.77611 * 359.94975 * 13 12 11 34 34 H 1.07997 * 120.32400 * 180.02562 * 14 13 12 35 35 H 1.08000 * 119.51826 * 179.97438 * 15 14 13 36 36 H 0.97000 * 119.99898 * 180.26996 * 18 17 16 37 37 H 0.97000 * 119.99782 * 0.02562 * 21 19 18 38 38 H 1.08998 * 109.47109 * 299.99543 * 22 21 19 39 39 H 1.09003 * 109.47550 * 60.00165 * 22 21 19 40 40 H 0.96701 * 113.99948 * 309.66513 * 24 23 22 41 41 H 1.09005 * 113.61671 * 334.57196 * 25 23 22 42 42 H 1.09004 * 113.61564 * 105.47424 * 25 23 22 43 43 H 1.09005 * 113.61562 * 270.88204 * 26 25 23 44 44 H 1.08998 * 113.61577 * 139.98472 * 26 25 23 45 45 H 1.08996 * 113.61852 * 220.01727 * 27 26 25 46 46 H 1.09008 * 113.61203 * 89.11619 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 8 5.4506 -2.6365 -0.0011 12 6 6.0679 -3.8482 -0.0006 13 6 5.3221 -5.0186 0.0004 14 6 5.9960 -6.2319 0.0004 15 6 7.3767 -6.2393 -0.0013 16 7 8.0615 -5.1112 -0.0032 17 6 7.4599 -3.9333 -0.0091 18 7 8.2248 -2.7655 -0.0166 19 6 9.5704 -2.8413 -0.0232 20 8 10.1181 -3.9269 -0.0232 21 7 10.3088 -1.7139 -0.0310 22 6 11.7714 -1.7963 -0.0388 23 6 12.3616 -0.3847 -0.0473 24 8 11.8641 0.4312 1.0151 25 6 12.3105 0.2960 -1.4252 26 6 13.7138 0.8452 -1.1186 27 6 13.8937 -0.3584 -0.1786 28 1 -0.4850 0.8401 0.0004 29 1 3.8753 -0.6796 0.8894 30 1 3.8746 -0.6807 -0.8905 31 1 3.6585 -3.1502 0.8903 32 1 3.6578 -3.1505 -0.8897 33 1 4.2426 -4.9860 0.0017 34 1 5.4457 -7.1612 0.0007 35 1 7.9038 -7.1819 -0.0009 36 1 7.7877 -1.8995 -0.0170 37 1 9.8718 -0.8479 -0.0314 38 1 12.1102 -2.3268 0.8511 39 1 12.1005 -2.3327 -0.9288 40 1 10.8999 0.4371 1.0881 41 1 12.2888 -0.4061 -2.2587 42 1 11.5462 1.0694 -1.5020 43 1 13.7039 1.8050 -0.6021 44 1 14.3848 0.8326 -1.9775 45 1 14.4075 -0.1136 0.7510 46 1 14.3049 -1.2396 -0.6712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361814896.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:20 Heat of formation + Delta-G solvation = -69.522945 kcal Electronic energy + Delta-G solvation = -28276.155262 eV Core-core repulsion = 24166.686787 eV Total energy + Delta-G solvation = -4109.468475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.12742 -41.14062 -40.22924 -39.12073 -36.06341 -35.83075 -35.39603 -35.30474 -33.05727 -32.47547 -30.65870 -28.83044 -27.30360 -26.69829 -25.03594 -24.07719 -23.50863 -22.53064 -21.85123 -20.70316 -20.04164 -19.56659 -19.10455 -18.25658 -17.56636 -17.25964 -17.15794 -16.74148 -16.58402 -16.28759 -16.12415 -15.86155 -15.56958 -15.29157 -15.17655 -15.08899 -14.73801 -14.42543 -14.10953 -14.06146 -13.76071 -13.33167 -13.27908 -12.85920 -12.83731 -12.70183 -12.18851 -12.18562 -11.89138 -11.82330 -11.79541 -11.66961 -11.63676 -11.45214 -11.26769 -10.79823 -10.74613 -10.45546 -10.26097 -10.17865 -8.83958 -8.32725 -6.39649 0.14120 0.29388 1.33113 1.38399 1.40247 1.51609 2.05387 2.10006 2.34892 2.84877 2.90588 3.01286 3.02993 3.47148 3.54555 3.60539 3.74730 3.85539 3.89834 3.96856 4.12939 4.25353 4.30941 4.40896 4.46208 4.49765 4.68141 4.69544 4.78133 4.82561 4.94894 5.03067 5.06057 5.06853 5.14974 5.18327 5.26563 5.33361 5.33707 5.42167 5.47965 5.56729 5.75296 6.17412 6.29241 6.60770 6.67218 6.68536 7.13178 7.25670 7.48501 8.82851 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008901 B = 0.002901 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.985267 B = 9648.934304 C =12559.393259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.536 4.536 8 H 0.042 0.958 9 C -0.005 4.005 10 C 0.086 3.914 11 O -0.324 6.324 12 C 0.042 3.958 13 C -0.148 4.148 14 C -0.148 4.148 15 C 0.076 3.924 16 N -0.473 5.473 17 C 0.331 3.669 18 N -0.658 5.658 19 C 0.695 3.305 20 O -0.573 6.573 21 N -0.728 5.728 22 C 0.128 3.872 23 C 0.096 3.904 24 O -0.550 6.550 25 C -0.162 4.162 26 C -0.133 4.133 27 C -0.124 4.124 28 H 0.269 0.731 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.154 0.846 34 H 0.173 0.827 35 H 0.185 0.815 36 H 0.427 0.573 37 H 0.408 0.592 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.388 0.612 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.388 -3.287 -1.853 25.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.167 1.167 7 C -0.574 4.574 8 H 0.060 0.940 9 C -0.042 4.042 10 C 0.012 3.988 11 O -0.237 6.237 12 C -0.009 4.009 13 C -0.174 4.174 14 C -0.169 4.169 15 C -0.080 4.080 16 N -0.188 5.188 17 C 0.098 3.902 18 N -0.308 5.308 19 C 0.395 3.605 20 O -0.447 6.447 21 N -0.387 5.387 22 C 0.004 3.996 23 C 0.055 3.945 24 O -0.358 6.358 25 C -0.199 4.199 26 C -0.170 4.170 27 C -0.162 4.162 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.171 0.829 34 H 0.190 0.810 35 H 0.202 0.798 36 H 0.265 0.735 37 H 0.244 0.756 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.238 0.762 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 27.445 -3.815 -1.752 27.764 hybrid contribution -2.529 1.260 0.006 2.825 sum 24.916 -2.555 -1.746 25.108 Atomic orbital electron populations 1.70034 1.08257 1.28439 1.51703 1.25906 0.95584 1.03435 0.93767 0.85676 0.79643 0.78172 0.79313 1.19078 1.21108 1.16667 1.21129 0.90727 0.93786 1.51717 0.93998 1.19432 0.94103 0.92610 0.98095 1.22753 0.75184 0.99832 1.01062 1.85963 1.23205 1.25806 1.88717 1.19587 0.90937 0.86985 1.03354 1.21880 1.01708 0.91616 1.02240 1.22262 0.95200 0.98987 1.00468 1.23026 0.91946 0.95816 0.97254 1.67675 1.39469 0.97096 1.14578 1.17636 0.84325 0.87182 1.01034 1.42437 1.04900 1.08013 1.75462 1.16070 0.81034 0.85036 0.78366 1.91005 1.70858 1.27486 1.55385 1.44867 1.06907 1.07062 1.79865 1.21840 0.77521 0.97550 1.02740 1.22591 0.96508 0.87377 0.88044 1.86519 1.27614 1.69220 1.52418 1.23641 0.98842 1.00848 0.96616 1.22735 0.96827 0.97755 0.99669 1.23077 0.91891 1.00274 1.00908 0.92236 0.95069 0.95182 0.92055 0.92031 0.82861 0.80982 0.79833 0.73459 0.75586 0.92034 0.90343 0.76250 0.88551 0.90518 0.90318 0.89908 0.90712 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.56 13.96 21.45 0.30 -56.26 16 2 C 0.01 0.61 5.47 84.65 0.46 1.07 16 3 Si 0.95 41.54 27.47 68.60 1.88 43.42 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 7 C -0.54 -28.81 9.66 25.60 0.25 -28.57 16 8 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 9 C 0.00 -0.21 4.41 29.85 0.13 -0.08 16 10 C 0.09 3.10 4.70 71.98 0.34 3.44 16 11 O -0.32 -10.58 9.39 -93.36 -0.88 -11.46 16 12 C 0.04 1.29 6.72 22.70 0.15 1.44 16 13 C -0.15 -3.87 9.14 22.53 0.21 -3.66 16 14 C -0.15 -3.17 10.10 22.36 0.23 -2.94 16 15 C 0.08 1.86 11.17 84.63 0.95 2.80 16 16 N -0.47 -15.04 7.87 -192.58 -1.52 -16.56 16 17 C 0.33 10.28 7.45 132.98 0.99 11.27 16 18 N -0.66 -17.53 5.40 -321.76 -1.74 -19.26 16 19 C 0.70 18.78 8.53 179.06 1.53 20.30 16 20 O -0.57 -20.11 14.59 -4.00 -0.06 -20.17 16 21 N -0.73 -12.90 5.34 -478.54 -2.55 -15.46 16 22 C 0.13 2.12 5.26 86.38 0.45 2.57 16 23 C 0.10 1.27 1.41 -10.27 -0.01 1.26 16 24 O -0.55 -8.32 13.41 -148.98 -2.00 -10.32 16 25 C -0.16 -1.81 7.47 31.12 0.23 -1.57 16 26 C -0.13 -1.43 8.02 31.12 0.25 -1.18 16 27 C -0.12 -1.44 7.47 31.12 0.23 -1.21 16 28 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 30 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 31 H 0.06 2.15 7.70 -2.39 -0.02 2.14 16 32 H 0.06 2.16 7.70 -2.39 -0.02 2.14 16 33 H 0.15 3.73 6.44 -2.91 -0.02 3.71 16 34 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.43 9.42 8.06 -92.71 -0.75 8.67 16 37 H 0.41 4.76 7.34 -92.71 -0.68 4.08 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.34 8.05 -2.39 -0.02 1.32 16 40 H 0.39 3.74 7.62 -74.06 -0.56 3.17 16 41 H 0.10 1.01 8.03 -2.38 -0.02 0.99 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 44 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.11 0.98 8.10 -2.38 -0.02 0.96 16 Total: -1.00 -74.62 382.09 -1.19 -75.80 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: -1.01 Total: 25.31 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 6.38 Total: 4.96 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -5.51 Total: -107.54 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -2.93 Total: -41.95 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.88 Total: 43.42 kcal Total: -74.62 -1.19 -75.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361814896.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.280 kcal (2) G-P(sol) polarization free energy of solvation -74.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds