Wall clock time and date at job start Tue Mar 31 2020 18:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 120.00222 * 2 1 4 4 H 1.48504 * 109.46789 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47153 * 119.99336 * 3 2 1 6 6 H 1.48495 * 109.47340 * 239.99931 * 3 2 1 7 7 C 1.38810 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99948 * 153.67945 * 7 2 1 9 9 N 1.36931 * 120.00155 * 333.68291 * 7 2 1 10 10 C 1.46959 * 120.59724 * 152.80674 * 9 7 2 11 11 C 1.53818 * 108.39804 * 124.75867 * 10 9 7 12 12 N 1.46967 * 108.57782 * 49.63901 * 11 10 9 13 13 C 1.34775 * 120.58875 * 124.62671 * 12 11 10 14 14 O 1.21290 * 119.99294 * 175.08056 * 13 12 11 15 15 C 1.50696 * 120.00560 * 355.07983 * 13 12 11 16 16 H 1.08998 * 110.36484 * 45.29153 * 15 13 12 17 17 C 1.54378 * 110.40880 * 282.94214 * 15 13 12 18 18 C 1.54267 * 105.05902 * 217.37000 * 17 15 13 19 19 C 1.54378 * 105.05833 * 359.97438 * 18 17 15 20 20 N 1.48560 * 110.41030 * 167.76931 * 15 13 12 21 21 C 1.46895 * 110.99982 * 277.81377 * 20 15 13 22 22 C 1.53006 * 109.47266 * 170.00117 * 21 20 15 23 23 F 1.39901 * 109.46793 * 60.00582 * 22 21 20 24 24 F 1.39899 * 109.47116 * 180.02562 * 22 21 20 25 25 F 1.39902 * 109.46960 * 300.00453 * 22 21 20 26 26 C 1.46956 * 118.81205 * 304.64311 * 12 11 10 27 27 C 1.46967 * 120.59085 * 333.08945 * 9 7 2 28 28 H 0.96998 * 120.00124 * 173.82202 * 1 2 3 29 29 H 1.09006 * 109.60948 * 244.53865 * 10 9 7 30 30 H 1.09001 * 109.60823 * 5.05303 * 10 9 7 31 31 H 1.08995 * 109.73795 * 289.84878 * 11 10 9 32 32 H 1.09006 * 109.53138 * 169.30607 * 11 10 9 33 33 H 1.08997 * 110.32837 * 336.26051 * 17 15 13 34 34 H 1.08996 * 110.32542 * 98.37474 * 17 15 13 35 35 H 1.08995 * 110.32769 * 118.89565 * 18 17 15 36 36 H 1.09002 * 110.32221 * 241.00674 * 18 17 15 37 37 H 1.09004 * 110.40746 * 142.63408 * 19 18 17 38 38 H 1.09001 * 110.41517 * 265.07375 * 19 18 17 39 39 H 1.08997 * 109.47646 * 290.00658 * 21 20 15 40 40 H 1.09010 * 109.46995 * 50.00309 * 21 20 15 41 41 H 1.08995 * 109.61305 * 295.49060 * 26 12 11 42 42 H 1.08996 * 109.61253 * 174.97204 * 26 12 11 43 43 H 1.08996 * 109.61064 * 354.94023 * 27 9 7 44 44 H 1.08995 * 109.61351 * 115.46118 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0063 -1.2508 -0.4142 9 7 1.4321 -2.3263 0.5268 10 6 1.8182 -3.6606 0.0470 11 6 2.2678 -4.4997 1.2552 12 7 1.2455 -4.3932 2.3056 13 6 0.6758 -5.4997 2.8229 14 8 -0.1004 -5.4051 3.7501 15 6 1.0031 -6.8543 2.2494 16 1 2.0779 -6.9518 2.0966 17 6 0.2483 -7.0730 0.9206 18 6 -0.1523 -8.5627 0.9277 19 6 0.3948 -9.1188 2.2599 20 7 0.5048 -7.9301 3.1446 21 6 1.4464 -8.1781 4.2444 22 6 0.7951 -9.1030 5.2746 23 9 0.4598 -10.3169 4.6653 24 9 1.6916 -9.3387 6.3224 25 9 -0.3618 -8.4988 5.7783 26 6 0.8553 -3.0587 2.7815 27 6 0.4097 -2.2198 1.5772 28 1 -0.4850 -0.8351 -0.0904 29 1 0.9647 -4.1371 -0.4354 30 1 2.6398 -3.5702 -0.6636 31 1 3.2192 -4.1234 1.6311 32 1 2.3767 -5.5419 0.9549 33 1 -0.6399 -6.4424 0.8815 34 1 0.9014 -6.8591 0.0746 35 1 -1.2370 -8.6633 0.8921 36 1 0.3033 -9.0813 0.0841 37 1 -0.3003 -9.8441 2.6831 38 1 1.3741 -9.5729 2.1088 39 1 2.3477 -8.6487 3.8520 40 1 1.7077 -7.2322 4.7192 41 1 1.7061 -2.5798 3.2661 42 1 0.0313 -3.1491 3.4892 43 1 0.3010 -1.1777 1.8775 44 1 -0.5417 -2.5961 1.2013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362808178.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:09 Heat of formation + Delta-G solvation = -144.720976 kcal Electronic energy + Delta-G solvation = -30894.000036 eV Core-core repulsion = 26239.413989 eV Total energy + Delta-G solvation = -4654.586047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.19999 -47.79505 -47.57960 -40.47140 -38.44238 -36.82608 -34.25053 -33.22779 -31.22481 -30.95598 -29.26669 -28.24805 -26.79688 -24.04922 -23.40750 -23.12176 -22.12204 -21.34783 -20.40881 -18.90095 -18.67073 -18.38314 -17.94052 -17.39553 -16.72282 -16.21100 -15.61910 -14.85780 -14.77496 -14.75222 -14.57013 -14.43913 -14.30561 -14.11907 -13.89371 -13.80387 -13.77585 -13.64711 -13.58627 -13.42499 -13.25731 -12.81907 -12.60461 -12.10392 -12.01944 -11.91834 -11.54622 -11.43799 -11.13007 -10.93047 -10.84247 -10.78413 -10.53367 -10.44498 -10.08065 -9.57572 -9.44978 -8.91754 -8.62643 -8.30662 -6.99066 -6.17209 -3.35090 2.48245 2.79503 2.98266 3.43875 3.47019 3.48317 3.63303 3.65914 3.85650 4.19541 4.30711 4.38038 4.50646 4.63604 4.71512 4.78718 4.83969 4.99042 5.03614 5.17673 5.27337 5.29608 5.50656 5.54135 5.57252 5.60739 5.70160 5.81333 5.87631 5.91986 6.10498 6.17087 6.22444 6.30734 6.36325 6.48075 6.64608 6.89771 7.07781 7.74357 7.86582 8.43798 8.45558 8.96458 9.71139 10.13903 11.09879 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024384 B = 0.002878 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.006508 B = 9726.392280 C =10216.451543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.021 4.021 3 Si 1.063 2.937 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.357 4.357 8 H 0.059 0.941 9 N -0.597 5.597 10 C 0.134 3.866 11 C 0.088 3.912 12 N -0.598 5.598 13 C 0.514 3.486 14 O -0.527 6.527 15 C 0.050 3.950 16 H 0.079 0.921 17 C -0.110 4.110 18 C -0.120 4.120 19 C 0.023 3.977 20 N -0.481 5.481 21 C 0.000 4.000 22 C 0.462 3.538 23 F -0.186 7.186 24 F -0.186 7.186 25 F -0.167 7.167 26 C 0.095 3.905 27 C 0.138 3.862 28 H 0.269 0.731 29 H 0.023 0.977 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.610 -19.872 4.438 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.224 4.224 3 Si 0.893 3.107 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.485 4.485 8 H 0.076 0.924 9 N -0.321 5.321 10 C 0.006 3.994 11 C -0.037 4.037 12 N -0.332 5.332 13 C 0.300 3.700 14 O -0.403 6.403 15 C -0.061 4.061 16 H 0.097 0.903 17 C -0.149 4.149 18 C -0.158 4.158 19 C -0.104 4.104 20 N -0.205 5.205 21 C -0.130 4.130 22 C 0.407 3.593 23 F -0.167 7.167 24 F -0.168 7.168 25 F -0.148 7.148 26 C -0.028 4.028 27 C 0.011 3.989 28 H 0.080 0.920 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.137 0.863 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 3.501 -18.000 5.274 19.081 hybrid contribution 1.060 -2.043 -0.329 2.325 sum 4.561 -20.044 4.945 21.143 Atomic orbital electron populations 1.70797 1.06681 1.30382 1.47049 1.25869 0.96421 1.01556 0.98532 0.83553 0.74867 0.76073 0.76240 1.21031 1.21960 1.21946 1.19963 0.98349 0.88703 1.41533 0.92369 1.44074 1.46852 1.01018 1.40167 1.21346 0.98117 0.87091 0.92807 1.22495 0.91065 1.00048 0.90125 1.48029 1.40108 1.06232 1.38794 1.20099 0.81428 0.85118 0.83345 1.90701 1.35256 1.86267 1.28032 1.22639 0.99164 0.90830 0.93496 0.90336 1.22251 1.01094 0.97294 0.94234 1.22293 1.02277 0.94863 0.96412 1.23470 1.01106 0.92734 0.93077 1.64955 1.42619 1.05208 1.07746 1.23377 0.94758 1.01106 0.93781 1.20292 0.77448 0.79813 0.81713 1.93145 1.92924 1.47911 1.82746 1.93180 1.68149 1.94954 1.60469 1.93248 1.50519 1.82827 1.88185 1.22326 1.00462 0.81440 0.98608 1.21360 0.90674 0.99727 0.87121 0.91999 0.95961 0.91402 0.91441 0.91086 0.90022 0.89818 0.90354 0.90555 0.88639 0.92969 0.89992 0.86253 0.91834 0.89896 0.88935 0.95989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.30 12.35 55.49 0.69 -25.62 16 2 C -0.02 -0.57 4.66 -17.43 -0.08 -0.65 16 3 Si 1.06 24.19 29.99 -169.99 -5.10 19.09 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.36 -9.37 9.48 -15.06 -0.14 -9.52 16 8 H 0.06 1.52 7.95 -52.48 -0.42 1.11 16 9 N -0.60 -13.94 2.83 -171.76 -0.49 -14.43 16 10 C 0.13 2.47 6.70 -3.37 -0.02 2.45 16 11 C 0.09 1.30 6.37 -3.36 -0.02 1.28 16 12 N -0.60 -10.06 2.95 -172.21 -0.51 -10.57 16 13 C 0.51 8.37 6.48 -10.99 -0.07 8.30 16 14 O -0.53 -10.47 15.96 5.55 0.09 -10.38 16 15 C 0.05 0.60 1.67 -67.23 -0.11 0.48 16 16 H 0.08 0.77 6.75 -51.93 -0.35 0.42 16 17 C -0.11 -1.18 6.15 -25.35 -0.16 -1.33 16 18 C -0.12 -1.03 7.00 -25.35 -0.18 -1.21 16 19 C 0.02 0.21 5.42 -2.17 -0.01 0.20 16 20 N -0.48 -5.70 4.51 -223.48 -1.01 -6.71 16 21 C 0.00 0.00 4.89 -3.82 -0.02 -0.02 16 22 C 0.46 5.21 3.28 37.16 0.12 5.33 16 23 F -0.19 -1.99 14.79 2.25 0.03 -1.96 16 24 F -0.19 -2.05 17.32 2.25 0.04 -2.01 16 25 F -0.17 -2.35 17.24 2.25 0.04 -2.31 16 26 C 0.10 1.83 6.58 -3.60 -0.02 1.81 16 27 C 0.14 3.11 4.88 -3.59 -0.02 3.09 16 28 H 0.27 7.88 6.87 -40.82 -0.28 7.60 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.80 4.90 -51.93 -0.25 0.54 16 33 H 0.08 1.06 7.85 -51.93 -0.41 0.66 16 34 H 0.08 0.77 7.56 -51.93 -0.39 0.37 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.89 6.78 -51.93 -0.35 0.54 16 38 H 0.05 0.39 7.75 -51.93 -0.40 -0.02 16 39 H 0.08 0.62 7.77 -51.93 -0.40 0.21 16 40 H 0.12 1.34 7.78 -51.92 -0.40 0.94 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.08 1.61 7.02 -51.93 -0.36 1.25 16 43 H 0.09 2.34 6.19 -51.93 -0.32 2.02 16 44 H 0.02 0.52 7.97 -51.93 -0.41 0.11 16 LS Contribution 354.61 15.07 5.34 5.34 Total: -1.00 -31.62 354.61 -7.69 -39.31 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.09 Total: 0.03 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -0.73 Total: 10.21 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -1.31 Total: -57.32 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.11 Total: -6.28 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -5.10 Total: 19.09 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.62 -7.69 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362808178.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.415 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds