Wall clock time and date at job start Tue Mar 31 2020 18:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99756 * 2 1 4 4 H 1.48493 * 109.47196 * 264.93024 * 3 2 1 5 5 H 1.48504 * 109.46810 * 24.93060 * 3 2 1 6 6 H 1.48505 * 109.46962 * 144.92710 * 3 2 1 7 7 C 1.37878 * 120.00418 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99836 * 0.91513 * 7 2 1 9 9 C 1.50696 * 120.00145 * 180.92452 * 7 2 1 10 10 C 1.53001 * 115.55134 * 86.91719 * 9 7 2 11 11 N 1.46504 * 109.47041 * 64.92940 * 10 9 7 12 12 C 1.34781 * 119.99891 * 184.34037 * 11 10 9 13 13 O 1.21281 * 120.00134 * 5.11418 * 12 11 10 14 14 C 1.50701 * 119.99729 * 185.11269 * 12 11 10 15 15 N 1.46500 * 109.46759 * 176.24096 * 14 12 11 16 16 C 1.34010 * 124.22465 * 89.97665 * 15 14 12 17 17 O 1.21545 * 123.81352 * 359.94019 * 16 15 14 18 18 N 1.34977 * 112.36908 * 179.97438 * 16 15 14 19 19 C 1.45936 * 105.99834 * 0.02562 * 18 16 15 20 20 C 1.53574 * 112.01205 * 238.41791 * 19 18 16 21 21 C 1.54504 * 104.08179 * 275.01698 * 20 19 18 22 22 C 1.53974 * 106.66235 * 337.67331 * 21 20 19 23 23 C 1.53569 * 112.01453 * 121.57732 * 19 18 16 24 24 C 1.35213 * 124.22239 * 269.95102 * 15 14 12 25 25 O 1.21236 * 127.46681 * 0.04247 * 24 15 14 26 26 C 1.52993 * 117.49988 * 232.58882 * 9 7 2 27 27 C 1.52997 * 117.49856 * 301.25136 * 9 7 2 28 28 H 0.96995 * 120.00388 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47576 * 304.92978 * 10 9 7 30 30 H 1.09004 * 109.47333 * 184.92993 * 10 9 7 31 31 H 0.96997 * 119.99663 * 4.34349 * 11 10 9 32 32 H 1.09001 * 109.46681 * 56.24286 * 14 12 11 33 33 H 1.08996 * 109.46664 * 296.23812 * 14 12 11 34 34 H 0.97005 * 126.99820 * 180.02562 * 18 16 15 35 35 H 1.08998 * 110.50479 * 156.36406 * 20 19 18 36 36 H 1.08995 * 110.50596 * 33.66807 * 20 19 18 37 37 H 1.09002 * 110.01724 * 218.37370 * 21 20 19 38 38 H 1.08996 * 110.01819 * 96.97073 * 21 20 19 39 39 H 1.08997 * 110.01481 * 119.30857 * 22 21 20 40 40 H 1.08999 * 110.01529 * 240.70336 * 22 21 20 41 41 H 1.08995 * 110.51070 * 326.33655 * 23 19 18 42 42 H 1.09000 * 110.50881 * 203.63539 * 23 19 18 43 43 H 1.09007 * 117.50058 * 215.00196 * 26 9 7 44 44 H 1.08997 * 117.50158 * 0.02562 * 26 9 7 45 45 H 1.08998 * 117.50066 * 359.97256 * 27 9 7 46 46 H 1.09008 * 117.50234 * 144.97734 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6037 1.9847 -1.3945 5 1 1.3969 2.6813 0.5902 6 1 3.4889 1.4736 0.8045 7 6 2.0046 -1.1940 -0.0005 8 1 1.4648 -2.1292 -0.0159 9 6 3.5114 -1.1940 0.0205 10 6 4.1520 -1.1315 1.4086 11 7 3.8241 -2.3500 2.1530 12 6 4.2096 -2.4789 3.4381 13 8 4.7457 -1.5512 4.0063 14 6 3.9745 -3.7757 4.1688 15 7 4.5586 -3.6934 5.5098 16 6 3.9015 -3.2556 6.5925 17 8 2.7463 -2.8778 6.5759 18 7 4.6676 -3.2808 7.7035 19 6 5.9677 -3.7942 7.2839 20 6 6.3582 -5.0670 8.0493 21 6 7.0074 -4.5402 9.3486 22 6 7.4798 -3.1044 9.0554 23 6 7.1024 -2.8049 7.5873 24 6 5.8279 -4.0501 5.8096 25 8 6.6708 -4.4821 5.0529 26 6 4.2329 -2.0093 -1.0544 27 6 4.2339 -0.4801 -1.1237 28 1 -0.4850 0.8400 -0.0004 29 1 3.7704 -0.2636 1.9462 30 1 5.2340 -1.0485 1.3060 31 1 3.3297 -3.0640 1.7210 32 1 4.4415 -4.5926 3.6185 33 1 2.9029 -3.9579 4.2498 34 1 4.4071 -3.0124 8.5985 35 1 7.0753 -5.6533 7.4746 36 1 5.4738 -5.6615 8.2781 37 1 7.8583 -5.1648 9.6205 38 1 6.2750 -4.5345 10.1559 39 1 6.9765 -2.4028 9.7207 40 1 8.5597 -3.0331 9.1851 41 1 6.7514 -1.7781 7.4852 42 1 7.9528 -2.9858 6.9299 43 1 5.1640 -2.5012 -0.7727 44 1 3.6178 -2.5453 -1.7771 45 1 3.6194 -0.0108 -1.8919 46 1 5.1655 0.0343 -0.8875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374017227.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:33 Heat of formation + Delta-G solvation = -53.801220 kcal Electronic energy + Delta-G solvation = -29655.605366 eV Core-core repulsion = 25546.818636 eV Total energy + Delta-G solvation = -4108.786730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.82983 -39.36913 -38.79795 -38.04570 -37.05911 -35.76047 -33.87860 -33.54135 -32.13395 -29.39066 -29.32336 -28.54060 -26.40979 -25.06211 -23.75964 -21.96167 -21.67876 -20.99121 -20.77056 -19.96166 -19.22525 -18.14251 -17.41093 -16.85894 -16.54606 -16.29282 -15.89996 -15.81145 -15.44405 -15.18103 -14.93340 -14.72620 -14.58916 -14.28837 -13.96584 -13.74883 -13.14686 -12.94496 -12.89811 -12.63472 -12.29311 -12.21229 -12.10527 -11.85974 -11.75863 -11.66743 -11.17987 -10.97496 -10.92710 -10.80300 -10.49937 -10.43839 -10.28942 -10.21161 -9.72824 -9.64497 -9.33746 -9.20888 -8.68555 -8.58109 -8.37442 -6.15939 -4.21031 1.45030 1.96647 2.85363 2.92378 2.94896 3.28918 3.39292 3.43148 3.60242 3.72207 4.00618 4.04744 4.39815 4.56632 4.69810 4.80120 4.85636 4.89179 4.93953 5.05144 5.10711 5.13382 5.15086 5.26153 5.34124 5.42214 5.47177 5.58101 5.65514 5.66831 5.69619 5.83640 5.99119 6.03739 6.18553 6.39826 6.46787 6.61407 6.67950 6.89703 6.95300 7.03016 7.06514 7.21123 7.66463 7.96986 8.05204 8.39873 8.60317 8.83800 9.46970 10.95381 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.002857 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.886418 B = 9797.004424 C =10138.028736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.081 3.919 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.260 1.260 7 C -0.492 4.492 8 H 0.079 0.921 9 C -0.016 4.016 10 C 0.156 3.844 11 N -0.695 5.695 12 C 0.495 3.505 13 O -0.546 6.546 14 C 0.098 3.902 15 N -0.560 5.560 16 C 0.708 3.292 17 O -0.531 6.531 18 N -0.712 5.712 19 C 0.115 3.885 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.118 4.118 24 C 0.542 3.458 25 O -0.462 6.462 26 C -0.178 4.178 27 C -0.194 4.194 28 H 0.266 0.734 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.406 0.594 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.439 0.561 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.547 -11.360 17.406 25.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.123 4.123 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.185 1.185 7 C -0.529 4.529 8 H 0.097 0.903 9 C -0.018 4.018 10 C 0.033 3.967 11 N -0.345 5.345 12 C 0.279 3.721 13 O -0.424 6.424 14 C -0.028 4.028 15 N -0.305 5.305 16 C 0.409 3.591 17 O -0.403 6.403 18 N -0.377 5.377 19 C 0.023 3.977 20 C -0.156 4.156 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.157 4.157 24 C 0.329 3.671 25 O -0.331 6.331 26 C -0.215 4.215 27 C -0.232 4.232 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.240 0.760 32 H 0.141 0.859 33 H 0.147 0.853 34 H 0.284 0.716 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.558 -10.615 17.259 24.950 hybrid contribution -0.080 0.904 -0.004 0.907 sum 14.478 -9.711 17.255 24.529 Atomic orbital electron populations 1.69871 1.06370 1.27350 1.49412 1.24967 0.94594 0.99149 0.93554 0.86860 0.80387 0.83266 0.78664 1.20210 1.22096 1.18452 1.20172 0.85978 0.94572 1.52216 0.90282 1.19618 0.95264 1.00888 0.85981 1.21191 0.96627 0.86389 0.92493 1.45720 1.56293 1.21409 1.11051 1.20562 0.79565 0.89363 0.82648 1.90678 1.44164 1.40715 1.66881 1.21529 1.02560 0.98178 0.80490 1.46009 1.14446 1.60436 1.09654 1.15937 0.84670 0.77808 0.80714 1.91050 1.14607 1.50350 1.84315 1.45208 1.11793 1.70131 1.10568 1.21337 0.86820 0.97616 0.91910 1.22499 1.01962 0.94629 0.96496 1.22209 1.00692 0.96267 0.96837 1.22218 1.01920 0.96575 0.95349 1.22490 0.96419 0.98854 0.97889 1.20371 0.81154 0.75652 0.89902 1.90790 1.43977 1.41788 1.56522 1.22852 1.01125 0.93072 1.04446 1.22972 1.01468 0.94966 1.03791 0.92411 0.91405 0.93869 0.75950 0.85859 0.85347 0.71597 0.88953 0.89898 0.90781 0.91208 0.91190 0.90767 0.89626 0.89002 0.90834 0.89308 0.89025 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 2 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 3 Si 0.88 21.78 24.75 -169.99 -4.21 17.58 16 4 H -0.28 -6.60 7.01 56.52 0.40 -6.21 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 6 H -0.26 -6.25 5.99 56.52 0.34 -5.92 16 7 C -0.49 -12.97 9.29 -34.44 -0.32 -13.29 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 9 C -0.02 -0.36 0.85 -155.67 -0.13 -0.49 16 10 C 0.16 3.32 5.23 -4.04 -0.02 3.30 16 11 N -0.70 -12.88 5.45 -60.29 -0.33 -13.21 16 12 C 0.50 9.10 7.89 -10.98 -0.09 9.01 16 13 O -0.55 -12.03 16.42 5.56 0.09 -11.94 16 14 C 0.10 1.35 6.20 -5.19 -0.03 1.32 16 15 N -0.56 -7.86 2.11 -122.22 -0.26 -8.12 16 16 C 0.71 10.18 8.64 -87.42 -0.76 9.42 16 17 O -0.53 -9.63 17.50 5.33 0.09 -9.54 16 18 N -0.71 -7.02 6.03 -53.62 -0.32 -7.35 16 19 C 0.11 1.06 1.04 -132.88 -0.14 0.93 16 20 C -0.12 -0.75 6.03 -25.64 -0.15 -0.91 16 21 C -0.12 -0.57 6.82 -25.43 -0.17 -0.74 16 22 C -0.12 -0.66 6.82 -25.43 -0.17 -0.83 16 23 C -0.12 -0.97 6.03 -25.65 -0.15 -1.13 16 24 C 0.54 6.97 7.02 -10.99 -0.08 6.89 16 25 O -0.46 -6.78 17.80 5.60 0.10 -6.68 16 26 C -0.18 -3.35 9.96 -26.70 -0.27 -3.62 16 27 C -0.19 -3.98 7.59 -26.69 -0.20 -4.18 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.07 1.64 6.76 -51.93 -0.35 1.29 16 30 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 31 H 0.41 6.68 8.44 -40.82 -0.34 6.34 16 32 H 0.12 1.34 8.02 -51.93 -0.42 0.92 16 33 H 0.13 1.62 7.87 -51.93 -0.41 1.21 16 34 H 0.44 3.19 8.96 -40.82 -0.37 2.83 16 35 H 0.09 0.61 8.07 -51.93 -0.42 0.19 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 0.80 8.07 -51.93 -0.42 0.38 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 45 H 0.09 1.97 7.06 -51.93 -0.37 1.61 16 46 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -35.45 379.99 -8.06 -43.51 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -6.94 Total: 8.10 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -2.78 Total: 7.86 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.14 Total: -54.62 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: 0.28 Total: -28.16 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.21 Total: 17.58 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.45 -8.06 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374017227.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.293 kcal (2) G-P(sol) polarization free energy of solvation -35.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds