Wall clock time and date at job start Tue Mar 31 2020 18:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99756 * 2 1 4 4 H 1.48493 * 109.47196 * 264.93024 * 3 2 1 5 5 H 1.48504 * 109.46810 * 24.93060 * 3 2 1 6 6 H 1.48505 * 109.46962 * 144.92710 * 3 2 1 7 7 C 1.37878 * 120.00418 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99836 * 0.91513 * 7 2 1 9 9 C 1.50696 * 120.00145 * 180.92452 * 7 2 1 10 10 C 1.53001 * 115.55134 * 86.91719 * 9 7 2 11 11 N 1.46504 * 109.47041 * 64.92940 * 10 9 7 12 12 C 1.34781 * 119.99891 * 184.34037 * 11 10 9 13 13 O 1.21281 * 120.00134 * 5.11418 * 12 11 10 14 14 C 1.50701 * 119.99729 * 185.11269 * 12 11 10 15 15 N 1.46500 * 109.46759 * 176.24096 * 14 12 11 16 16 C 1.34010 * 124.22465 * 89.97665 * 15 14 12 17 17 O 1.21545 * 123.81352 * 359.94019 * 16 15 14 18 18 N 1.34977 * 112.36908 * 179.97438 * 16 15 14 19 19 C 1.45936 * 105.99834 * 0.02562 * 18 16 15 20 20 C 1.53574 * 112.01205 * 238.41791 * 19 18 16 21 21 C 1.54504 * 104.08179 * 275.01698 * 20 19 18 22 22 C 1.53974 * 106.66235 * 337.67331 * 21 20 19 23 23 C 1.53569 * 112.01453 * 121.57732 * 19 18 16 24 24 C 1.35213 * 124.22239 * 269.95102 * 15 14 12 25 25 O 1.21236 * 127.46681 * 0.04247 * 24 15 14 26 26 C 1.52993 * 117.49988 * 232.58882 * 9 7 2 27 27 C 1.52997 * 117.49856 * 301.25136 * 9 7 2 28 28 H 0.96995 * 120.00388 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47576 * 304.92978 * 10 9 7 30 30 H 1.09004 * 109.47333 * 184.92993 * 10 9 7 31 31 H 0.96997 * 119.99663 * 4.34349 * 11 10 9 32 32 H 1.09001 * 109.46681 * 56.24286 * 14 12 11 33 33 H 1.08996 * 109.46664 * 296.23812 * 14 12 11 34 34 H 0.97005 * 126.99820 * 180.02562 * 18 16 15 35 35 H 1.08998 * 110.50479 * 156.36406 * 20 19 18 36 36 H 1.08995 * 110.50596 * 33.66807 * 20 19 18 37 37 H 1.09002 * 110.01724 * 218.37370 * 21 20 19 38 38 H 1.08996 * 110.01819 * 96.97073 * 21 20 19 39 39 H 1.08997 * 110.01481 * 119.30857 * 22 21 20 40 40 H 1.08999 * 110.01529 * 240.70336 * 22 21 20 41 41 H 1.08995 * 110.51070 * 326.33655 * 23 19 18 42 42 H 1.09000 * 110.50881 * 203.63539 * 23 19 18 43 43 H 1.09007 * 117.50058 * 215.00196 * 26 9 7 44 44 H 1.08997 * 117.50158 * 0.02562 * 26 9 7 45 45 H 1.08998 * 117.50066 * 359.97256 * 27 9 7 46 46 H 1.09008 * 117.50234 * 144.97734 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6037 1.9847 -1.3945 5 1 1.3969 2.6813 0.5902 6 1 3.4889 1.4736 0.8045 7 6 2.0046 -1.1940 -0.0005 8 1 1.4648 -2.1292 -0.0159 9 6 3.5114 -1.1940 0.0205 10 6 4.1520 -1.1315 1.4086 11 7 3.8241 -2.3500 2.1530 12 6 4.2096 -2.4789 3.4381 13 8 4.7457 -1.5512 4.0063 14 6 3.9745 -3.7757 4.1688 15 7 4.5586 -3.6934 5.5098 16 6 3.9015 -3.2556 6.5925 17 8 2.7463 -2.8778 6.5759 18 7 4.6676 -3.2808 7.7035 19 6 5.9677 -3.7942 7.2839 20 6 6.3582 -5.0670 8.0493 21 6 7.0074 -4.5402 9.3486 22 6 7.4798 -3.1044 9.0554 23 6 7.1024 -2.8049 7.5873 24 6 5.8279 -4.0501 5.8096 25 8 6.6708 -4.4821 5.0529 26 6 4.2329 -2.0093 -1.0544 27 6 4.2339 -0.4801 -1.1237 28 1 -0.4850 0.8400 -0.0004 29 1 3.7704 -0.2636 1.9462 30 1 5.2340 -1.0485 1.3060 31 1 3.3297 -3.0640 1.7210 32 1 4.4415 -4.5926 3.6185 33 1 2.9029 -3.9579 4.2498 34 1 4.4071 -3.0124 8.5985 35 1 7.0753 -5.6533 7.4746 36 1 5.4738 -5.6615 8.2781 37 1 7.8583 -5.1648 9.6205 38 1 6.2750 -4.5345 10.1559 39 1 6.9765 -2.4028 9.7207 40 1 8.5597 -3.0331 9.1851 41 1 6.7514 -1.7781 7.4852 42 1 7.9528 -2.9858 6.9299 43 1 5.1640 -2.5012 -0.7727 44 1 3.6178 -2.5453 -1.7771 45 1 3.6194 -0.0108 -1.8919 46 1 5.1655 0.0343 -0.8875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374017227.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:33 Heat of formation + Delta-G solvation = -80.726500 kcal Electronic energy + Delta-G solvation = -29656.772934 eV Core-core repulsion = 25546.818636 eV Total energy + Delta-G solvation = -4109.954298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.81654 -40.79915 -39.90001 -39.01379 -38.62102 -36.87427 -35.14111 -34.77457 -34.23591 -30.50143 -29.92191 -29.34018 -28.14952 -26.85176 -24.73728 -23.42377 -22.90205 -21.67713 -21.45471 -21.39000 -20.93439 -19.20108 -18.81701 -18.30391 -17.75411 -17.25610 -17.13379 -17.03038 -16.86739 -16.39362 -16.23639 -15.99199 -15.59824 -15.43462 -15.29896 -14.85967 -14.71051 -14.55913 -14.36532 -13.93075 -13.63978 -13.29852 -13.12646 -12.91114 -12.72749 -12.66865 -12.22494 -12.20420 -12.15559 -12.03881 -12.01820 -11.78846 -11.60613 -11.32668 -11.30799 -11.01843 -10.84616 -10.67710 -10.49566 -10.34034 -9.99891 -8.32447 -6.38590 0.43554 0.93137 1.30450 1.36542 1.44829 1.47963 1.74692 2.07045 2.28707 2.33586 2.80456 3.02791 3.20635 3.38811 3.39857 3.68591 3.79068 3.99724 4.04341 4.12195 4.19167 4.26795 4.33828 4.38075 4.39362 4.44153 4.45887 4.49754 4.65610 4.77802 4.77901 4.85882 4.98383 5.01880 5.08359 5.22152 5.26956 5.27572 5.44115 5.44338 5.49577 5.67435 5.73197 5.87806 6.22186 6.25934 6.53392 6.70861 6.99087 7.14610 7.32241 8.82188 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.002857 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.886418 B = 9797.004424 C =10138.028736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.025 3.975 3 Si 0.929 3.071 4 H -0.259 1.259 5 H -0.305 1.305 6 H -0.250 1.250 7 C -0.479 4.479 8 H 0.049 0.951 9 C -0.042 4.042 10 C 0.166 3.834 11 N -0.693 5.693 12 C 0.490 3.510 13 O -0.587 6.587 14 C 0.100 3.900 15 N -0.567 5.567 16 C 0.701 3.299 17 O -0.577 6.577 18 N -0.689 5.689 19 C 0.116 3.884 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.117 4.117 23 C -0.119 4.119 24 C 0.536 3.464 25 O -0.483 6.483 26 C -0.147 4.147 27 C -0.195 4.195 28 H 0.264 0.736 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.415 0.585 32 H 0.157 0.843 33 H 0.140 0.860 34 H 0.452 0.548 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.366 -12.614 18.597 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.173 4.173 3 Si 0.755 3.245 4 H -0.184 1.184 5 H -0.233 1.233 6 H -0.174 1.174 7 C -0.517 4.517 8 H 0.067 0.933 9 C -0.043 4.043 10 C 0.041 3.959 11 N -0.343 5.343 12 C 0.276 3.724 13 O -0.468 6.468 14 C -0.025 4.025 15 N -0.312 5.312 16 C 0.402 3.598 17 O -0.453 6.453 18 N -0.354 5.354 19 C 0.025 3.975 20 C -0.150 4.150 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.158 4.158 24 C 0.325 3.675 25 O -0.353 6.353 26 C -0.184 4.184 27 C -0.233 4.233 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.252 0.748 32 H 0.175 0.825 33 H 0.158 0.842 34 H 0.300 0.700 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.124 0.876 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 17.428 -11.907 18.469 28.047 hybrid contribution -0.930 1.215 -0.393 1.580 sum 16.498 -10.692 18.076 26.707 Atomic orbital electron populations 1.70004 1.08029 1.27876 1.52403 1.25710 0.95108 1.02457 0.94012 0.86061 0.79409 0.79511 0.79514 1.18390 1.23251 1.17353 1.20388 0.88572 0.93001 1.49699 0.93288 1.19432 0.92849 1.04738 0.87288 1.20905 0.97141 0.86226 0.91607 1.45693 1.56374 1.20894 1.11336 1.21328 0.78317 0.90415 0.82344 1.90651 1.45951 1.42515 1.67644 1.21624 1.03800 0.96407 0.80652 1.46160 1.15084 1.60416 1.09554 1.16165 0.84400 0.77547 0.81660 1.91016 1.16603 1.52591 1.85089 1.45131 1.11376 1.68814 1.10114 1.21551 0.86517 0.99616 0.89838 1.22545 1.02515 0.93031 0.96888 1.22221 1.01483 0.95644 0.96010 1.22221 1.02833 0.97372 0.92997 1.22522 0.95562 0.97578 1.00121 1.20974 0.80343 0.74841 0.91370 1.90770 1.44244 1.42769 1.57505 1.22892 1.01470 0.92312 1.01679 1.23040 1.01786 0.96424 1.02029 0.92694 0.94965 0.92291 0.74808 0.82503 0.84245 0.70009 0.88826 0.89011 0.89291 0.89764 0.90265 0.89637 0.91182 0.89565 0.87610 0.89296 0.90239 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.38 13.96 21.45 0.30 -58.09 16 2 C 0.03 1.45 5.47 84.66 0.46 1.91 16 3 Si 0.93 45.27 24.75 68.60 1.70 46.96 16 4 H -0.26 -11.80 7.01 99.48 0.70 -11.10 16 5 H -0.30 -15.28 7.11 99.48 0.71 -14.58 16 6 H -0.25 -11.65 5.99 99.48 0.60 -11.05 16 7 C -0.48 -25.57 9.29 25.60 0.24 -25.33 16 8 H 0.05 2.84 8.06 -2.92 -0.02 2.82 16 9 C -0.04 -1.79 0.85 -52.93 -0.04 -1.83 16 10 C 0.17 6.89 5.23 86.38 0.45 7.34 16 11 N -0.69 -25.30 5.45 -463.04 -2.53 -27.83 16 12 C 0.49 17.94 7.89 87.66 0.69 18.63 16 13 O -0.59 -26.13 16.42 -3.03 -0.05 -26.18 16 14 C 0.10 2.71 6.20 85.63 0.53 3.24 16 15 N -0.57 -15.63 2.11 -777.46 -1.64 -17.28 16 16 C 0.70 20.03 8.64 179.23 1.55 21.58 16 17 O -0.58 -21.30 17.50 -3.86 -0.07 -21.37 16 18 N -0.69 -12.79 6.03 -441.72 -2.66 -15.46 16 19 C 0.12 1.97 1.04 3.22 0.00 1.97 16 20 C -0.11 -1.13 6.03 31.30 0.19 -0.94 16 21 C -0.12 -0.66 6.82 31.43 0.21 -0.45 16 22 C -0.12 -0.91 6.82 31.44 0.21 -0.69 16 23 C -0.12 -1.79 6.03 31.30 0.19 -1.60 16 24 C 0.54 13.27 7.02 87.46 0.61 13.88 16 25 O -0.48 -13.67 17.80 -2.89 -0.05 -13.72 16 26 C -0.15 -5.09 9.96 30.62 0.30 -4.78 16 27 C -0.20 -7.48 7.59 30.62 0.23 -7.25 16 28 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.03 1.56 6.76 -2.39 -0.02 1.55 16 30 H 0.06 2.27 8.09 -2.38 -0.02 2.25 16 31 H 0.42 13.40 8.44 -92.71 -0.78 12.61 16 32 H 0.16 3.12 8.02 -2.39 -0.02 3.10 16 33 H 0.14 3.47 7.87 -2.39 -0.02 3.45 16 34 H 0.45 5.84 8.96 -92.70 -0.83 5.00 16 35 H 0.09 0.99 8.07 -2.39 -0.02 0.97 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.09 1.41 8.07 -2.39 -0.02 1.39 16 43 H 0.11 3.05 8.14 -2.38 -0.02 3.03 16 44 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.08 3.26 7.06 -2.39 -0.02 3.24 16 46 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 Total: -1.00 -79.91 379.99 0.12 -79.79 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: -0.71 Total: 27.49 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 5.84 Total: 25.67 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -6.53 Total: -118.65 kcal Atomic # 8 Polarization: -61.10 SS G_CDS: -0.17 Total: -61.27 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.70 Total: 46.96 kcal Total: -79.91 0.12 -79.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374017227.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.938 kcal (2) G-P(sol) polarization free energy of solvation -79.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds