Wall clock time and date at job start Tue Mar 31 2020 18:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 120.00444 * 2 1 4 4 H 1.48502 * 109.46902 * 269.99956 * 3 2 1 5 5 H 1.48496 * 109.47089 * 29.99754 * 3 2 1 6 6 H 1.48493 * 109.47285 * 150.00177 * 3 2 1 7 7 C 1.38954 * 119.99333 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99374 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00380 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00199 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00001 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00109 * 179.97438 * 10 9 7 13 13 N 1.46495 * 109.47303 * 180.02562 * 12 10 9 14 14 C 1.34779 * 120.00292 * 179.97438 * 13 12 10 15 15 O 1.21582 * 119.99830 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00134 * 180.26949 * 14 13 12 17 17 C 1.43435 * 120.53771 * 354.06605 * 16 14 13 18 18 C 1.54407 * 116.38724 * 271.72343 * 17 16 14 19 19 C 1.54840 * 110.07101 * 318.65377 * 18 17 16 20 20 C 1.50130 * 110.81489 * 321.07405 * 19 18 17 21 21 C 1.52525 * 105.41897 * 97.68426 * 20 19 18 22 22 C 1.46239 * 114.27481 * 270.59638 * 21 20 19 23 23 H 1.08997 * 109.84671 * 298.89730 * 22 21 20 24 24 C 1.50694 * 109.84331 * 177.91270 * 22 21 20 25 25 C 1.34518 * 125.79025 * 146.82804 * 24 22 21 26 26 C 1.41378 * 106.84240 * 179.97438 * 25 24 22 27 27 C 1.34513 * 106.84380 * 0.02562 * 26 25 24 28 28 O 1.34305 * 125.79200 * 326.51568 * 24 22 21 29 29 H 0.97004 * 119.99649 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00108 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47261 * 59.99648 * 12 10 9 32 32 H 1.09009 * 109.47197 * 299.99954 * 12 10 9 33 33 H 0.96999 * 119.99977 * 0.02562 * 13 12 10 34 34 H 1.08996 * 108.16016 * 33.29231 * 17 16 14 35 35 H 1.08998 * 108.16540 * 149.86993 * 17 16 14 36 36 H 1.08993 * 109.44653 * 198.43723 * 18 17 16 37 37 H 1.09007 * 109.34779 * 78.79966 * 18 17 16 38 38 H 1.08998 * 109.21150 * 200.72972 * 19 18 17 39 39 H 1.08997 * 109.21572 * 81.41746 * 19 18 17 40 40 H 1.09007 * 110.24993 * 338.70971 * 20 19 18 41 41 H 1.09003 * 110.37276 * 216.72419 * 20 19 18 42 42 H 1.08990 * 108.52326 * 149.35379 * 21 20 19 43 43 H 1.08996 * 108.39776 * 31.74419 * 21 20 19 44 44 H 1.08000 * 126.57761 * 0.03453 * 25 24 22 45 45 H 1.08007 * 126.58300 * 180.02562 * 26 25 24 46 46 H 1.08003 * 125.79415 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0462 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7000 7 6 2.0087 -1.2035 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0016 11 8 3.2099 -3.5580 0.0021 12 6 1.2434 -4.8629 0.0022 13 7 2.1953 -5.9765 0.0039 14 6 1.7460 -7.2472 0.0052 15 8 0.5506 -7.4693 0.0045 16 7 2.6217 -8.2717 0.0123 17 6 4.0299 -8.0275 -0.1092 18 6 4.5944 -7.9665 -1.5451 19 6 3.9562 -9.0775 -2.4146 20 6 3.7942 -10.3449 -1.6264 21 6 2.3456 -10.3433 -1.1491 22 6 2.1385 -9.6876 0.1415 23 1 2.7079 -10.2038 0.9144 24 6 0.6728 -9.6981 0.4913 25 6 0.1606 -9.7899 1.7318 26 6 -1.2465 -9.7623 1.5971 27 6 -1.5102 -9.6558 0.2824 28 8 -0.3438 -9.6114 -0.3821 29 1 -0.4850 0.8401 0.0004 30 1 0.3532 -2.3907 0.0005 31 1 0.6171 -4.9212 -0.8880 32 1 0.6164 -4.9201 0.8920 33 1 3.1490 -5.7994 0.0049 34 1 4.2536 -7.0791 0.3790 35 1 4.5588 -8.8138 0.4294 36 1 5.6749 -8.1061 -1.5165 37 1 4.3692 -6.9929 -1.9806 38 1 4.5955 -9.2703 -3.2762 39 1 2.9785 -8.7439 -2.7621 40 1 4.4726 -10.3478 -0.7731 41 1 3.9819 -11.2122 -2.2595 42 1 2.0054 -11.3758 -1.0715 43 1 1.7375 -9.8349 -1.8973 44 1 0.7175 -9.8686 2.6538 45 1 -1.9708 -9.8163 2.3964 46 1 -2.4930 -9.6092 -0.1630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377053800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:12 Heat of formation + Delta-G solvation = -32.420179 kcal Electronic energy + Delta-G solvation = -30006.158009 eV Core-core repulsion = 25898.298430 eV Total energy + Delta-G solvation = -4107.859579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.35702 -40.42394 -38.52091 -37.61587 -34.68143 -33.98838 -33.80008 -32.91593 -32.55915 -31.35156 -29.22755 -27.73229 -26.54333 -25.13966 -24.44586 -22.47721 -21.37049 -20.88302 -20.25092 -19.62815 -19.34496 -18.27079 -17.85660 -16.71029 -16.59986 -15.93308 -15.65131 -15.34715 -15.05239 -14.90532 -14.62517 -14.59164 -14.32015 -14.07658 -13.88601 -13.41956 -13.28763 -12.81711 -12.79066 -12.53641 -12.45543 -12.18414 -12.11558 -11.85435 -11.62755 -11.56863 -11.37599 -11.11898 -10.84495 -10.72823 -10.63923 -10.45535 -10.30980 -9.99515 -9.62610 -9.55278 -8.87371 -8.60901 -8.47829 -8.08802 -7.97034 -6.50399 -3.92331 1.89253 2.67847 3.02963 3.12148 3.22389 3.26114 3.27786 3.41707 3.76662 4.04363 4.19566 4.31890 4.63698 4.68584 4.82859 4.85407 4.92676 4.94509 5.09339 5.18130 5.18995 5.31009 5.34526 5.37961 5.56056 5.60193 5.69644 5.86952 5.92520 5.94967 5.99866 6.03384 6.04813 6.09310 6.09899 6.14663 6.15441 6.34832 6.46029 6.77915 6.81055 7.06318 7.46653 7.46852 7.93556 8.21727 8.46545 8.82664 9.05722 9.40899 9.88833 10.66569 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.002992 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.476198 B = 9355.789808 C =10773.183549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.723 5.723 14 C 0.705 3.295 15 O -0.569 6.569 16 N -0.625 5.625 17 C 0.110 3.890 18 C -0.140 4.140 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.144 4.144 22 C 0.254 3.746 23 H 0.104 0.896 24 C 0.028 3.972 25 C -0.214 4.214 26 C -0.215 4.215 27 C -0.032 4.032 28 O -0.152 6.152 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.406 0.594 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.576 -22.280 -0.683 22.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.215 3.785 11 O -0.485 6.485 12 C 0.001 3.999 13 N -0.381 5.381 14 C 0.406 3.594 15 O -0.446 6.446 16 N -0.364 5.364 17 C -0.015 4.015 18 C -0.179 4.179 19 C -0.157 4.157 20 C -0.152 4.152 21 C -0.182 4.182 22 C 0.152 3.848 23 H 0.122 0.878 24 C -0.023 4.023 25 C -0.235 4.235 26 C -0.234 4.234 27 C -0.101 4.101 28 O -0.047 6.047 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.245 0.755 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.154 0.846 45 H 0.156 0.844 46 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.391 -22.175 -0.988 22.454 hybrid contribution 0.065 1.222 0.224 1.245 sum 3.456 -20.952 -0.764 21.249 Atomic orbital electron populations 1.69620 1.06009 1.28484 1.49383 1.25322 0.95660 0.99908 0.96837 0.85816 0.79228 0.80532 0.78473 1.20281 1.20808 1.19324 1.19722 0.93436 0.82016 1.48230 0.87711 1.41785 1.09475 1.04445 1.62700 1.19769 0.88290 0.85018 0.85419 1.90481 1.13760 1.86891 1.57368 1.20756 0.91260 0.84931 1.02970 1.44943 1.11235 1.03223 1.78746 1.15834 0.85057 0.80506 0.77961 1.90905 1.13631 1.82296 1.57786 1.47373 1.05928 1.04679 1.78374 1.20936 0.81250 1.02417 0.96924 1.22640 1.00058 0.99741 0.95503 1.21546 1.01413 0.94687 0.98059 1.21033 0.95708 0.98047 1.00372 1.20950 0.98128 1.01250 0.97900 1.18663 0.86798 0.81006 0.98292 0.87813 1.21366 0.88800 1.03809 0.88332 1.21269 0.94602 1.10788 0.96804 1.21577 0.95847 1.09427 0.96592 1.23717 0.88620 1.05919 0.91809 1.83959 1.13838 1.69692 1.37199 0.91612 0.77044 0.90195 0.90183 0.75470 0.90977 0.90808 0.90559 0.91336 0.92393 0.91787 0.91057 0.91268 0.91063 0.90471 0.84613 0.84384 0.79083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.07 13.05 55.50 0.72 -23.35 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 8 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.78 5.29 -10.97 -0.06 -13.84 16 10 C 0.43 10.00 7.85 -10.99 -0.09 9.91 16 11 O -0.60 -15.38 15.24 5.55 0.08 -15.29 16 12 C 0.13 2.48 6.15 -5.20 -0.03 2.45 16 13 N -0.72 -12.63 5.40 -66.42 -0.36 -12.99 16 14 C 0.71 11.78 8.16 -86.92 -0.71 11.07 16 15 O -0.57 -10.93 12.07 -18.35 -0.22 -11.15 16 16 N -0.62 -7.93 2.58 -175.36 -0.45 -8.39 16 17 C 0.11 1.12 4.73 -4.93 -0.02 1.10 16 18 C -0.14 -1.34 6.40 -25.02 -0.16 -1.50 16 19 C -0.12 -1.09 5.65 -27.19 -0.15 -1.25 16 20 C -0.11 -0.87 5.76 -28.40 -0.16 -1.04 16 21 C -0.14 -1.37 4.31 -30.19 -0.13 -1.50 16 22 C 0.25 2.81 2.96 -70.25 -0.21 2.60 16 23 H 0.10 0.88 8.13 -51.93 -0.42 0.46 16 24 C 0.03 0.39 3.66 -35.63 -0.13 0.26 16 25 C -0.21 -2.93 10.68 -39.70 -0.42 -3.35 16 26 C -0.22 -2.85 10.91 -39.70 -0.43 -3.29 16 27 C -0.03 -0.42 11.90 29.42 0.35 -0.07 16 28 O -0.15 -2.31 8.66 -17.95 -0.16 -2.47 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.40 9.61 7.90 -40.82 -0.32 9.28 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 33 H 0.41 6.99 5.17 -40.82 -0.21 6.78 16 34 H 0.07 0.81 6.22 -51.93 -0.32 0.49 16 35 H 0.07 0.57 6.89 -51.93 -0.36 0.21 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.73 6.82 -51.93 -0.35 0.38 16 40 H 0.07 0.47 6.28 -51.92 -0.33 0.15 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.93 6.65 -51.93 -0.35 0.58 16 44 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 46 H 0.19 1.89 8.06 -52.48 -0.42 1.46 16 LS Contribution 368.14 15.07 5.55 5.55 Total: -1.00 -32.58 368.14 -8.86 -41.44 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -6.40 Total: 17.39 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -2.54 Total: 7.49 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.14 Total: -58.56 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.29 Total: -28.91 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.58 -8.86 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377053800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.018 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds