Wall clock time and date at job start Tue Mar 31 2020 18:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 120.00444 * 2 1 4 4 H 1.48502 * 109.46902 * 269.99956 * 3 2 1 5 5 H 1.48496 * 109.47089 * 29.99754 * 3 2 1 6 6 H 1.48493 * 109.47285 * 150.00177 * 3 2 1 7 7 C 1.38954 * 119.99333 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99374 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00380 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00199 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00001 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00109 * 179.97438 * 10 9 7 13 13 N 1.46495 * 109.47303 * 180.02562 * 12 10 9 14 14 C 1.34779 * 120.00292 * 179.97438 * 13 12 10 15 15 O 1.21582 * 119.99830 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00134 * 180.26949 * 14 13 12 17 17 C 1.43435 * 120.53771 * 354.06605 * 16 14 13 18 18 C 1.54407 * 116.38724 * 271.72343 * 17 16 14 19 19 C 1.54840 * 110.07101 * 318.65377 * 18 17 16 20 20 C 1.50130 * 110.81489 * 321.07405 * 19 18 17 21 21 C 1.52525 * 105.41897 * 97.68426 * 20 19 18 22 22 C 1.46239 * 114.27481 * 270.59638 * 21 20 19 23 23 H 1.08997 * 109.84671 * 298.89730 * 22 21 20 24 24 C 1.50694 * 109.84331 * 177.91270 * 22 21 20 25 25 C 1.34518 * 125.79025 * 146.82804 * 24 22 21 26 26 C 1.41378 * 106.84240 * 179.97438 * 25 24 22 27 27 C 1.34513 * 106.84380 * 0.02562 * 26 25 24 28 28 O 1.34305 * 125.79200 * 326.51568 * 24 22 21 29 29 H 0.97004 * 119.99649 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00108 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47261 * 59.99648 * 12 10 9 32 32 H 1.09009 * 109.47197 * 299.99954 * 12 10 9 33 33 H 0.96999 * 119.99977 * 0.02562 * 13 12 10 34 34 H 1.08996 * 108.16016 * 33.29231 * 17 16 14 35 35 H 1.08998 * 108.16540 * 149.86993 * 17 16 14 36 36 H 1.08993 * 109.44653 * 198.43723 * 18 17 16 37 37 H 1.09007 * 109.34779 * 78.79966 * 18 17 16 38 38 H 1.08998 * 109.21150 * 200.72972 * 19 18 17 39 39 H 1.08997 * 109.21572 * 81.41746 * 19 18 17 40 40 H 1.09007 * 110.24993 * 338.70971 * 20 19 18 41 41 H 1.09003 * 110.37276 * 216.72419 * 20 19 18 42 42 H 1.08990 * 108.52326 * 149.35379 * 21 20 19 43 43 H 1.08996 * 108.39776 * 31.74419 * 21 20 19 44 44 H 1.08000 * 126.57761 * 0.03453 * 25 24 22 45 45 H 1.08007 * 126.58300 * 180.02562 * 26 25 24 46 46 H 1.08003 * 125.79415 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0462 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7000 7 6 2.0087 -1.2035 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0016 11 8 3.2099 -3.5580 0.0021 12 6 1.2434 -4.8629 0.0022 13 7 2.1953 -5.9765 0.0039 14 6 1.7460 -7.2472 0.0052 15 8 0.5506 -7.4693 0.0045 16 7 2.6217 -8.2717 0.0123 17 6 4.0299 -8.0275 -0.1092 18 6 4.5944 -7.9665 -1.5451 19 6 3.9562 -9.0775 -2.4146 20 6 3.7942 -10.3449 -1.6264 21 6 2.3456 -10.3433 -1.1491 22 6 2.1385 -9.6876 0.1415 23 1 2.7079 -10.2038 0.9144 24 6 0.6728 -9.6981 0.4913 25 6 0.1606 -9.7899 1.7318 26 6 -1.2465 -9.7623 1.5971 27 6 -1.5102 -9.6558 0.2824 28 8 -0.3438 -9.6114 -0.3821 29 1 -0.4850 0.8401 0.0004 30 1 0.3532 -2.3907 0.0005 31 1 0.6171 -4.9212 -0.8880 32 1 0.6164 -4.9201 0.8920 33 1 3.1490 -5.7994 0.0049 34 1 4.2536 -7.0791 0.3790 35 1 4.5588 -8.8138 0.4294 36 1 5.6749 -8.1061 -1.5165 37 1 4.3692 -6.9929 -1.9806 38 1 4.5955 -9.2703 -3.2762 39 1 2.9785 -8.7439 -2.7621 40 1 4.4726 -10.3478 -0.7731 41 1 3.9819 -11.2122 -2.2595 42 1 2.0054 -11.3758 -1.0715 43 1 1.7375 -9.8349 -1.8973 44 1 0.7175 -9.8686 2.6538 45 1 -1.9708 -9.8163 2.3964 46 1 -2.4930 -9.6092 -0.1630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377053800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:11 Heat of formation + Delta-G solvation = -52.796822 kcal Electronic energy + Delta-G solvation = -30007.041606 eV Core-core repulsion = 25898.298430 eV Total energy + Delta-G solvation = -4108.743176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.36894 -41.56860 -40.23800 -38.82752 -36.30349 -35.59380 -34.74317 -34.05451 -33.56161 -33.35706 -30.19195 -29.22472 -27.62643 -26.33277 -25.91552 -23.46682 -22.40922 -21.86573 -21.40354 -21.01178 -20.68651 -20.06090 -19.16310 -17.84118 -17.66172 -17.39796 -16.99558 -16.62898 -16.53495 -16.19554 -15.93621 -15.74751 -15.54494 -15.43116 -15.19959 -14.73172 -14.50262 -13.94922 -13.67579 -13.60834 -13.57880 -13.52350 -13.51168 -13.28745 -12.98687 -12.90274 -12.46809 -12.44894 -12.17291 -12.13205 -11.69814 -11.58153 -11.47501 -11.37626 -11.10950 -10.60196 -10.57161 -10.22485 -10.10325 -9.57213 -9.01855 -8.52040 -6.02472 0.86512 1.35505 1.41743 1.53930 1.60064 1.87894 1.95495 2.15021 2.27804 2.34453 2.88529 3.15055 3.16765 3.48020 3.85270 3.94825 4.02339 4.08932 4.18657 4.19795 4.29315 4.34944 4.36705 4.40662 4.42374 4.51204 4.59701 4.81287 4.88701 4.95264 5.04573 5.10407 5.18396 5.25487 5.28015 5.31823 5.35791 5.38571 5.39112 5.46550 5.59559 5.81313 5.87875 5.91280 6.46068 6.46395 6.95127 7.01964 7.40800 7.54393 7.92368 8.65000 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.002992 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.476198 B = 9355.789808 C =10773.183549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.434 3.566 11 O -0.622 6.622 12 C 0.146 3.854 13 N -0.725 5.725 14 C 0.700 3.300 15 O -0.597 6.597 16 N -0.616 5.616 17 C 0.102 3.898 18 C -0.137 4.137 19 C -0.117 4.117 20 C -0.105 4.105 21 C -0.137 4.137 22 C 0.249 3.751 23 H 0.139 0.861 24 C 0.015 3.985 25 C -0.229 4.229 26 C -0.228 4.228 27 C -0.047 4.047 28 O -0.174 6.174 29 H 0.280 0.720 30 H 0.398 0.602 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.407 0.593 34 H 0.059 0.941 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.032 0.968 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.045 0.955 44 H 0.150 0.850 45 H 0.155 0.845 46 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.915 -23.516 -0.268 24.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.221 3.779 11 O -0.510 6.510 12 C 0.017 3.983 13 N -0.385 5.385 14 C 0.401 3.599 15 O -0.477 6.477 16 N -0.354 5.354 17 C -0.022 4.022 18 C -0.176 4.176 19 C -0.155 4.155 20 C -0.142 4.142 21 C -0.175 4.175 22 C 0.149 3.851 23 H 0.157 0.843 24 C -0.036 4.036 25 C -0.249 4.249 26 C -0.247 4.247 27 C -0.115 4.115 28 O -0.069 6.069 29 H 0.089 0.911 30 H 0.232 0.768 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.247 0.753 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.168 0.832 45 H 0.173 0.827 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 4.742 -23.456 -0.577 23.937 hybrid contribution -0.372 1.527 0.089 1.574 sum 4.370 -21.929 -0.488 22.365 Atomic orbital electron populations 1.69689 1.07071 1.29648 1.49268 1.26151 0.96535 1.02726 0.95730 0.84854 0.77938 0.76379 0.78735 1.19531 1.19635 1.19330 1.19748 0.92977 0.83488 1.50434 0.89507 1.41832 1.09533 1.04603 1.63426 1.20372 0.88125 0.85835 0.83577 1.90456 1.15067 1.87531 1.57989 1.20491 0.91027 0.83408 1.03404 1.44893 1.10861 1.03322 1.79409 1.16021 0.85264 0.80755 0.77854 1.90889 1.15013 1.82804 1.59014 1.47451 1.06435 1.04478 1.77012 1.21172 0.80007 1.03253 0.97734 1.22632 1.01606 0.98453 0.94873 1.21520 0.99876 0.95346 0.98748 1.21036 0.94490 0.97618 1.01075 1.20879 0.99146 1.01367 0.96149 1.19101 0.85762 0.80043 1.00186 0.84319 1.21900 0.89800 1.03581 0.88342 1.21601 0.95069 1.10840 0.97428 1.21920 0.96340 1.09323 0.97157 1.24326 0.89228 1.05698 0.92240 1.83947 1.14703 1.70056 1.38217 0.91063 0.76815 0.89753 0.89601 0.75329 0.92232 0.87015 0.87937 0.94232 0.91217 0.94898 0.88924 0.89481 0.89560 0.93668 0.83223 0.82722 0.76702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 1.00 42.03 29.55 68.60 2.03 44.05 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.34 -18.80 9.68 84.04 0.81 -17.99 16 8 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 9 N -0.56 -28.71 5.29 -306.99 -1.62 -30.33 16 10 C 0.43 20.65 7.85 87.66 0.69 21.34 16 11 O -0.62 -32.68 15.24 -3.06 -0.05 -32.72 16 12 C 0.15 5.69 6.15 85.63 0.53 6.22 16 13 N -0.73 -25.68 5.40 -482.31 -2.61 -28.28 16 14 C 0.70 23.41 8.16 179.05 1.46 24.88 16 15 O -0.60 -23.22 12.07 18.63 0.22 -23.00 16 16 N -0.62 -14.94 2.58 -826.97 -2.13 -17.07 16 17 C 0.10 1.89 4.73 87.42 0.41 2.30 16 18 C -0.14 -2.41 6.40 31.70 0.20 -2.20 16 19 C -0.12 -1.97 5.65 30.30 0.17 -1.80 16 20 C -0.11 -1.27 5.76 29.51 0.17 -1.10 16 21 C -0.14 -2.37 4.31 28.35 0.12 -2.25 16 22 C 0.25 5.04 2.96 41.44 0.12 5.16 16 23 H 0.14 1.84 8.13 -2.39 -0.02 1.82 16 24 C 0.01 0.40 3.66 24.83 0.09 0.49 16 25 C -0.23 -6.06 10.68 22.19 0.24 -5.82 16 26 C -0.23 -5.93 10.91 22.19 0.24 -5.69 16 27 C -0.05 -1.24 11.90 66.97 0.80 -0.45 16 28 O -0.17 -5.32 8.66 20.04 0.17 -5.14 16 29 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.40 19.79 7.90 -92.70 -0.73 19.06 16 31 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 33 H 0.41 14.22 5.17 -92.71 -0.48 13.74 16 34 H 0.06 1.28 6.22 -2.39 -0.01 1.27 16 35 H 0.11 1.26 6.89 -2.39 -0.02 1.24 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.03 0.76 6.82 -2.39 -0.02 0.74 16 40 H 0.09 0.77 6.28 -2.38 -0.01 0.76 16 41 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.04 1.09 6.65 -2.39 -0.02 1.07 16 44 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 45 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 46 H 0.22 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -71.78 368.14 2.64 -69.13 By element: Atomic # 1 Polarization: 49.60 SS G_CDS: -0.19 Total: 49.41 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: 6.53 Total: 22.98 kcal Atomic # 7 Polarization: -118.64 SS G_CDS: -6.08 Total: -124.71 kcal Atomic # 8 Polarization: -61.22 SS G_CDS: 0.35 Total: -60.87 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -71.78 2.64 -69.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377053800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.337 kcal (2) G-P(sol) polarization free energy of solvation -71.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds