Wall clock time and date at job start Tue Mar 31 2020 18:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99588 * 2 1 4 4 H 1.48495 * 109.47546 * 240.00276 * 3 2 1 5 5 H 1.48502 * 109.47120 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47429 * 119.99674 * 3 2 1 7 7 C 1.37877 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99763 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00029 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46921 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46627 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47647 * 55.00046 * 11 10 9 13 13 N 1.46894 * 109.47352 * 294.99793 * 11 10 9 14 14 C 1.50704 * 109.46931 * 174.99984 * 11 10 9 15 15 O 1.21277 * 120.00083 * 99.99917 * 14 11 10 16 16 N 1.34781 * 119.99875 * 280.00231 * 14 11 10 17 17 C 1.46969 * 120.59345 * 359.71223 * 16 14 11 18 18 C 1.53818 * 108.39550 * 124.75982 * 17 16 14 19 19 N 1.46967 * 108.57546 * 49.63920 * 18 17 16 20 20 C 1.34771 * 120.59335 * 124.66741 * 19 18 17 21 21 O 1.21696 * 120.00135 * 174.40484 * 20 19 18 22 22 C 1.46659 * 119.99993 * 354.40803 * 20 19 18 23 23 C 1.36548 * 125.99014 * 186.07890 * 22 20 19 24 24 C 1.40367 * 106.70918 * 179.90650 * 23 22 20 25 25 C 1.35134 * 107.11228 * 0.35437 * 24 23 22 26 26 O 1.33926 * 108.76949 * 359.77572 * 25 24 23 27 27 C 1.46963 * 118.81546 * 304.64331 * 19 18 17 28 28 C 1.46960 * 120.59400 * 180.02562 * 16 14 11 29 29 H 0.96991 * 120.00331 * 0.02562 * 1 2 3 30 30 H 1.09008 * 109.47001 * 300.00151 * 9 7 2 31 31 H 1.09001 * 109.47210 * 59.99995 * 9 7 2 32 32 H 1.08999 * 109.46655 * 299.99685 * 10 9 7 33 33 H 1.08993 * 109.47077 * 59.99855 * 10 9 7 34 34 H 1.00902 * 110.99909 * 300.00339 * 13 11 10 35 35 H 1.00896 * 111.00514 * 63.95587 * 13 11 10 36 36 H 1.08995 * 109.61152 * 244.54663 * 17 16 14 37 37 H 1.09002 * 109.60980 * 5.06216 * 17 16 14 38 38 H 1.09003 * 109.74088 * 289.85210 * 18 17 16 39 39 H 1.08993 * 109.52895 * 169.30543 * 18 17 16 40 40 H 1.08001 * 126.64310 * 0.03973 * 23 22 20 41 41 H 1.07996 * 126.44325 * 180.15570 * 24 23 22 42 42 H 1.08000 * 125.61439 * 179.77947 * 25 24 23 43 43 H 1.08997 * 109.61137 * 295.48802 * 27 19 18 44 44 H 1.08999 * 109.61307 * 174.97042 * 27 19 18 45 45 H 1.09001 * 109.60927 * 354.94533 * 28 16 14 46 46 H 1.09003 * 109.61282 * 115.45838 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2513 -2.4991 -0.0017 10 6 2.2457 -3.6620 -0.0015 11 6 1.4807 -4.9870 -0.0020 12 1 0.7889 -5.0069 -0.8441 13 7 0.7285 -5.1187 1.2528 14 6 2.4555 -6.1297 -0.1256 15 8 2.7869 -6.7533 0.8603 16 7 2.9589 -6.4585 -1.3318 17 6 2.5615 -5.7155 -2.5360 18 6 3.8330 -5.1912 -3.2246 19 7 4.7845 -6.3031 -3.3602 20 6 5.2878 -6.6320 -4.5663 21 8 6.1505 -7.4860 -4.6534 22 6 4.7961 -5.9606 -5.7739 23 6 5.1311 -6.2753 -7.0598 24 6 4.4318 -5.3841 -7.8886 25 6 3.7159 -4.5696 -7.0822 26 8 3.9379 -4.9202 -5.8089 27 6 5.1776 -7.0497 -2.1569 28 6 3.9099 -7.5707 -1.4675 29 1 -0.4850 0.8399 -0.0004 30 1 0.6242 -2.5575 0.8881 31 1 0.6249 -2.5563 -0.8920 32 1 2.8729 -3.6037 -0.8910 33 1 2.8716 -3.6045 0.8890 34 1 1.3480 -5.1030 2.0491 35 1 0.0236 -4.4008 1.3290 36 1 2.0221 -6.3778 -3.2131 37 1 1.9238 -4.8774 -2.2549 38 1 4.2786 -4.3999 -2.6218 39 1 3.5797 -4.8041 -4.2115 40 1 5.8022 -7.0596 -7.3775 41 1 4.4628 -5.3529 -8.9677 42 1 3.0708 -3.7681 -7.4106 43 1 5.7188 -6.3907 -1.4780 44 1 5.8122 -7.8899 -2.4386 45 1 4.1629 -7.9581 -0.4806 46 1 3.4641 -8.3618 -2.0705 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424081744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:48 Heat of formation + Delta-G solvation = -34.017576 kcal Electronic energy + Delta-G solvation = -29674.307119 eV Core-core repulsion = 25566.378272 eV Total energy + Delta-G solvation = -4107.928847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.06584 -40.58193 -39.45010 -37.20963 -35.64939 -34.28945 -33.36272 -32.93115 -31.91016 -30.15701 -29.95278 -28.21930 -26.54990 -24.67582 -23.87565 -23.47255 -22.11756 -21.74844 -20.71211 -20.30112 -19.00181 -17.95401 -17.37848 -16.70535 -16.66337 -16.46087 -16.23417 -15.84860 -15.34837 -15.26090 -14.71993 -14.54001 -14.43013 -14.14624 -13.98828 -13.47683 -13.45078 -13.29557 -13.17363 -13.00979 -12.74141 -12.46292 -12.22083 -11.86302 -11.63319 -11.55780 -11.43587 -11.10217 -10.96050 -10.75352 -10.50854 -10.38955 -10.05901 -9.95440 -9.50391 -9.33956 -9.25279 -9.01291 -8.49189 -8.47753 -8.24491 -6.13826 -4.17335 0.75766 2.05631 2.23644 2.58795 2.77930 2.90749 3.09786 3.24240 3.29791 3.31989 4.09548 4.34287 4.47691 4.56738 4.59027 4.66341 4.84895 4.93641 5.00323 5.08768 5.11661 5.21611 5.22477 5.35827 5.41415 5.46030 5.47102 5.53845 5.58393 5.66691 5.73144 5.85337 5.99656 6.17810 6.19773 6.36718 6.45491 6.54664 6.78618 6.97436 7.27974 7.44233 7.51306 7.56317 7.70778 7.82565 7.84908 8.24607 8.31817 8.88304 9.47991 10.96903 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009414 B = 0.003643 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.439928 B = 7684.317309 C = 9842.389143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.026 3.974 10 C -0.139 4.139 11 C 0.073 3.927 12 H 0.097 0.903 13 N -0.830 5.830 14 C 0.530 3.470 15 O -0.535 6.535 16 N -0.618 5.618 17 C 0.092 3.908 18 C 0.073 3.927 19 N -0.601 5.601 20 C 0.604 3.396 21 O -0.525 6.525 22 C -0.081 4.081 23 C -0.117 4.117 24 C -0.227 4.227 25 C -0.008 4.008 26 O -0.156 6.156 27 C 0.099 3.901 28 C 0.099 3.901 29 H 0.263 0.737 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.346 0.654 35 H 0.355 0.645 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.125 0.875 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.211 0.789 43 H 0.078 0.922 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.135 -11.716 -13.956 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.178 4.178 11 C -0.042 4.042 12 H 0.115 0.885 13 N -0.363 5.363 14 C 0.318 3.682 15 O -0.410 6.410 16 N -0.353 5.353 17 C -0.032 4.032 18 C -0.049 4.049 19 N -0.333 5.333 20 C 0.393 3.607 21 O -0.403 6.403 22 C -0.132 4.132 23 C -0.137 4.137 24 C -0.246 4.246 25 C -0.077 4.077 26 O -0.052 6.052 27 C -0.024 4.024 28 C -0.024 4.024 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.092 0.908 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.141 0.859 40 H 0.177 0.823 41 H 0.174 0.826 42 H 0.228 0.772 43 H 0.096 0.904 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.253 -12.981 -13.418 19.689 hybrid contribution 0.795 2.098 -0.187 2.251 sum 7.048 -10.883 -13.605 18.794 Atomic orbital electron populations 1.69931 1.06003 1.26950 1.50225 1.24991 0.94842 0.99242 0.95054 0.86665 0.79620 0.83087 0.78692 1.20210 1.21196 1.20234 1.21118 0.92950 0.90845 1.51411 0.92794 1.19094 0.93639 0.91028 0.97389 1.22435 0.99941 0.93892 1.01577 1.21519 0.94691 0.92333 0.95617 0.88510 1.58747 1.18447 1.55921 1.03154 1.20962 0.80954 0.84369 0.81870 1.90627 1.60304 1.53529 1.36557 1.48053 1.45884 1.33944 1.07456 1.22310 0.96511 0.97647 0.86715 1.22930 0.89282 0.88536 1.04139 1.47950 1.44933 1.33712 1.06752 1.16720 0.81361 0.81693 0.80968 1.90866 1.30947 1.33167 1.85339 1.22017 1.00541 0.94569 0.96056 1.21966 1.00395 1.00650 0.90711 1.21861 1.02327 0.99042 1.01328 1.24680 1.01325 1.00867 0.80815 1.84179 1.51149 1.41172 1.28709 1.22125 0.97092 0.97654 0.85483 1.21937 0.88863 0.89039 1.02565 0.92783 0.96385 0.96328 0.92504 0.92592 0.84090 0.82983 0.90811 0.87092 0.89565 0.85862 0.82321 0.82616 0.77240 0.90357 0.87662 0.87561 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.53 -13.76 9.11 -34.44 -0.31 -14.08 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 9 C 0.03 0.59 4.74 -27.88 -0.13 0.45 16 10 C -0.14 -2.55 4.46 -26.73 -0.12 -2.67 16 11 C 0.07 1.19 2.35 -68.87 -0.16 1.03 16 12 H 0.10 1.47 6.75 -51.93 -0.35 1.12 16 13 N -0.83 -13.85 8.94 -5.65 -0.05 -13.90 16 14 C 0.53 8.52 6.95 -10.98 -0.08 8.45 16 15 O -0.53 -10.13 15.66 5.56 0.09 -10.04 16 16 N -0.62 -8.04 2.94 -172.18 -0.51 -8.54 16 17 C 0.09 1.02 5.94 -3.36 -0.02 1.00 16 18 C 0.07 0.79 6.52 -3.36 -0.02 0.77 16 19 N -0.60 -6.93 2.95 -173.73 -0.51 -7.44 16 20 C 0.60 7.61 7.66 -12.86 -0.10 7.51 16 21 O -0.52 -7.82 16.30 5.19 0.08 -7.74 16 22 C -0.08 -0.89 6.86 -36.79 -0.25 -1.14 16 23 C -0.12 -1.12 10.63 -39.39 -0.42 -1.54 16 24 C -0.23 -1.69 10.88 -39.89 -0.43 -2.12 16 25 C -0.01 -0.06 12.08 29.63 0.36 0.30 16 26 O -0.16 -1.50 7.06 5.00 0.04 -1.46 16 27 C 0.10 1.09 6.58 -3.57 -0.02 1.06 16 28 C 0.10 1.14 6.59 -3.57 -0.02 1.12 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.02 0.43 6.87 -51.92 -0.36 0.08 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.98 6.90 -51.93 -0.36 0.62 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.35 5.87 8.58 -39.29 -0.34 5.53 16 35 H 0.35 5.89 7.55 -39.29 -0.30 5.60 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.11 1.27 4.87 -51.93 -0.25 1.02 16 38 H 0.09 1.00 8.02 -51.93 -0.42 0.59 16 39 H 0.12 1.24 3.70 -55.59 -0.21 1.04 16 40 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.16 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.21 0.74 8.06 -52.49 -0.42 0.31 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.11 1.12 7.02 -51.93 -0.36 0.75 16 45 H 0.11 1.30 6.99 -51.93 -0.36 0.94 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 372.96 15.07 5.62 5.62 Total: -1.00 -32.67 372.96 -7.59 -40.26 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.23 Total: 10.35 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -1.83 Total: 1.68 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.33 Total: -54.27 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.21 Total: -19.24 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.67 -7.59 -40.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424081744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.238 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds