Wall clock time and date at job start Tue Mar 31 2020 19:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46946 * 180.02562 * 11 10 9 13 13 O 1.42107 * 110.54111 * 291.62603 * 12 11 10 14 14 O 1.42102 * 110.54223 * 68.37613 * 12 11 10 15 15 N 1.65600 * 104.45074 * 180.02562 * 12 11 10 16 16 C 1.46503 * 120.00062 * 64.99734 * 15 12 11 17 17 C 1.52995 * 109.47293 * 165.00295 * 16 15 12 18 18 C 1.52999 * 109.47081 * 180.02562 * 17 16 15 19 19 O 1.42906 * 109.46681 * 180.02562 * 18 17 16 20 20 C 1.42905 * 113.99646 * 179.97438 * 19 18 17 21 21 H 1.08992 * 109.48221 * 310.02406 * 20 19 18 22 22 C 1.53088 * 109.47861 * 189.99693 * 20 19 18 23 23 C 1.53180 * 109.16225 * 182.40852 * 22 20 19 24 24 C 1.53186 * 109.03325 * 56.98542 * 23 22 20 25 25 C 1.53096 * 109.16022 * 303.01600 * 24 23 22 26 26 O 1.42898 * 109.41485 * 57.61401 * 25 24 23 27 27 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 29 29 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 30 30 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 31 31 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 32 32 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 33 33 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 34 34 H 0.96993 * 120.00181 * 245.00479 * 15 12 11 35 35 H 1.09001 * 109.46958 * 285.00636 * 16 15 12 36 36 H 1.08997 * 109.46783 * 44.99932 * 16 15 12 37 37 H 1.09000 * 109.46735 * 300.00426 * 17 16 15 38 38 H 1.08998 * 109.47323 * 59.99555 * 17 16 15 39 39 H 1.08998 * 109.46796 * 299.99366 * 18 17 16 40 40 H 1.08997 * 109.47206 * 60.00111 * 18 17 16 41 41 H 1.09002 * 109.52414 * 302.31396 * 22 20 19 42 42 H 1.09000 * 109.52693 * 62.50416 * 22 20 19 43 43 H 1.09005 * 109.54111 * 176.84419 * 23 22 20 44 44 H 1.08994 * 109.54836 * 297.11556 * 23 22 20 45 45 H 1.08996 * 109.52415 * 62.92327 * 24 23 22 46 46 H 1.09005 * 109.51709 * 183.11419 * 24 23 22 47 47 H 1.08995 * 109.47894 * 177.59644 * 25 24 23 48 48 H 1.09006 * 109.47978 * 297.61547 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 16 2.6589 -6.3660 -0.0019 13 8 3.3548 -6.4264 -1.2395 14 8 3.3565 -6.4262 1.2346 15 7 1.7085 -7.7221 -0.0019 16 6 0.8485 -8.0140 -1.1515 17 6 0.3750 -9.4669 -1.0783 18 6 -0.5226 -9.7719 -2.2792 19 8 -0.9654 -11.1289 -2.2104 20 6 -1.8153 -11.5184 -3.2912 21 1 -2.6122 -10.7843 -3.4098 22 6 -2.4252 -12.8903 -2.9922 23 6 -3.2866 -13.3276 -4.1810 24 6 -2.4232 -13.3385 -5.4463 25 6 -1.8134 -11.9492 -5.6505 26 8 -1.0507 -11.5909 -4.4965 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5566 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.8725 -3.6048 0.8878 31 1 2.8712 -3.6040 -0.8921 32 1 0.8543 -5.0449 0.8894 33 1 0.8525 -5.0447 -0.8905 34 1 1.7211 -8.3231 0.7593 35 1 -0.0152 -7.3491 -1.1372 36 1 1.4097 -7.8606 -2.0732 37 1 1.2387 -10.1317 -1.0925 38 1 -0.1862 -9.6203 -0.1565 39 1 -1.3864 -9.1072 -2.2652 40 1 0.0389 -9.6188 -3.2007 41 1 -1.6280 -13.6166 -2.8334 42 1 -3.0445 -12.8266 -2.0976 43 1 -3.6788 -14.3281 -3.9986 44 1 -4.1129 -12.6284 -4.3093 45 1 -1.6261 -14.0737 -5.3370 46 1 -3.0414 -13.5951 -6.3067 47 1 -1.1639 -11.9624 -6.5257 48 1 -2.6104 -11.2208 -5.8003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439214367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:31 Heat of formation + Delta-G solvation = -200.081492 kcal Electronic energy + Delta-G solvation = -26287.071144 eV Core-core repulsion = 22275.092426 eV Total energy + Delta-G solvation = -4011.978718 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.10232 -37.77813 -36.89427 -36.01397 -35.68891 -34.66554 -34.19415 -32.18481 -31.92145 -30.34851 -27.80627 -25.80617 -24.70347 -23.72915 -23.65355 -22.08196 -20.79787 -20.61012 -19.16047 -17.88909 -17.40736 -17.23242 -16.63793 -16.50151 -16.10117 -15.83395 -15.58004 -15.28696 -15.00744 -14.71894 -14.49483 -14.15693 -14.11410 -13.90067 -13.30108 -13.23498 -12.76366 -12.59218 -12.30264 -12.11746 -11.95530 -11.83641 -11.79786 -11.76087 -11.72611 -11.59662 -11.50264 -11.30141 -11.20071 -10.99734 -10.89585 -10.86967 -10.43811 -10.17422 -9.96272 -9.94554 -9.71324 -9.32506 -9.08948 -8.40491 -6.05776 -4.08798 0.47653 2.70949 2.96332 3.32276 3.36043 3.39372 3.52608 3.96726 4.24439 4.27387 4.37477 4.39849 4.42432 4.47965 4.52057 4.62802 4.65769 4.83538 4.87385 5.05994 5.12274 5.14242 5.17024 5.19033 5.22338 5.25071 5.30584 5.35051 5.39038 5.44955 5.49895 5.57319 5.72911 5.79347 5.89051 5.94129 6.27498 6.45462 6.59402 6.83882 6.87057 6.90943 7.56582 7.66777 7.92207 8.32819 8.97225 9.55842 11.05397 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.001786 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.852598 B =15677.708970 C =16772.380057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.609 4.609 12 S 2.603 3.397 13 O -0.962 6.962 14 O -0.963 6.963 15 N -1.125 6.125 16 C 0.117 3.883 17 C -0.124 4.124 18 C 0.061 3.939 19 O -0.365 6.365 20 C 0.256 3.744 21 H 0.054 0.946 22 C -0.141 4.141 23 C -0.121 4.121 24 C -0.161 4.161 25 C 0.071 3.929 26 O -0.405 6.405 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.415 0.585 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.098 0.902 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.644 -28.313 -8.231 30.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.740 4.740 12 S 2.699 3.301 13 O -0.952 6.952 14 O -0.953 6.953 15 N -0.883 5.883 16 C -0.010 4.010 17 C -0.163 4.163 18 C -0.016 4.016 19 O -0.285 6.285 20 C 0.160 3.840 21 H 0.072 0.928 22 C -0.179 4.179 23 C -0.158 4.158 24 C -0.199 4.199 25 C -0.005 4.005 26 O -0.326 6.326 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.249 0.751 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.116 0.884 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.597 -28.180 -8.246 30.328 hybrid contribution -0.729 0.988 0.142 1.235 sum -8.325 -27.192 -8.105 29.570 Atomic orbital electron populations 1.69951 1.06087 1.26872 1.50555 1.25022 0.94898 0.99372 0.95096 0.86605 0.79558 0.82791 0.78767 1.20121 1.21263 1.20121 1.21224 0.93237 0.90915 1.51138 0.92405 1.19060 0.93542 0.90472 0.97705 1.21500 0.99385 0.91667 1.02007 1.30542 1.16398 1.15916 1.11193 1.05236 0.75544 0.75148 0.74182 1.93569 1.70274 1.85699 1.45643 1.93580 1.70645 1.85887 1.45227 1.55682 1.62388 1.42622 1.27575 1.21149 0.94265 0.96431 0.89154 1.21647 1.00192 0.95899 0.98517 1.22478 0.97747 0.82297 0.99081 1.87990 1.68744 1.29372 1.42361 1.22919 0.87105 0.95386 0.78576 0.92837 1.22026 1.00234 0.96361 0.99270 1.21599 0.97856 1.02386 0.93998 1.22259 1.00336 0.98651 0.98608 1.22524 0.95747 0.94646 0.87627 1.87830 1.37872 1.89998 1.16935 0.92859 0.96146 0.96126 0.91554 0.91532 0.85289 0.85554 0.75120 0.91368 0.89828 0.90060 0.90296 0.92713 0.91711 0.90042 0.90005 0.90634 0.91497 0.90688 0.90428 0.88386 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 10 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 11 C -0.61 -9.14 6.07 37.16 0.23 -8.91 16 12 S 2.60 37.40 5.46 -107.50 -0.59 36.81 16 13 O -0.96 -16.77 17.49 -57.54 -1.01 -17.78 16 14 O -0.96 -16.77 18.08 -57.54 -1.04 -17.81 16 15 N -1.12 -11.71 5.89 -10.61 -0.06 -11.77 16 16 C 0.12 1.06 6.13 -4.04 -0.02 1.04 16 17 C -0.12 -1.02 5.73 -26.73 -0.15 -1.17 16 18 C 0.06 0.52 5.81 37.16 0.22 0.74 16 19 O -0.37 -3.64 10.26 -59.04 -0.61 -4.25 16 20 C 0.26 2.14 3.16 37.20 0.12 2.25 16 21 H 0.05 0.39 8.09 -51.93 -0.42 -0.03 16 22 C -0.14 -0.91 5.79 -26.59 -0.15 -1.07 16 23 C -0.12 -0.56 6.03 -26.54 -0.16 -0.72 16 24 C -0.16 -0.75 6.14 -26.59 -0.16 -0.92 16 25 C 0.07 0.43 6.84 37.21 0.25 0.68 16 26 O -0.40 -3.79 10.25 -59.04 -0.61 -4.40 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.13 1.73 8.14 -51.92 -0.42 1.31 16 33 H 0.13 1.66 8.14 -51.92 -0.42 1.24 16 34 H 0.42 3.58 8.62 -34.47 -0.30 3.28 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.81 7.69 -51.93 -0.40 0.41 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.58 7.89 -51.93 -0.41 0.17 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 47 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 402.85 15.07 6.07 6.07 Total: -1.00 -36.41 402.85 -11.33 -47.73 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -8.68 Total: -2.05 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -0.53 Total: -23.34 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.67 Total: -37.58 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -3.26 Total: -44.23 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 37.40 SS G_CDS: -0.59 Total: 36.81 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.41 -11.33 -47.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439214367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.349 kcal (2) G-P(sol) polarization free energy of solvation -36.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds